mRNA_H-paniculata_contig5908.13534.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5908.13534.1
Unique NamemRNA_H-paniculata_contig5908.13534.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: D8LQC0_ECTSI (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQC0_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 7.300e-34
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRLADFLGAEMVKDKGLNCRMI+SNRPHGAPVT+RA+PT IFSAEPAVKKHYLRKWLK
Sbjct:  998 GTSQTTARRLADFLGAEMVKDKGLNCRMILSNRPHGAPVTDRAVPTAIFSAEPAVKKHYLRKWLK 1062
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: A0A6H5J9K7_9PHAE (DNA polymerase epsilon catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9K7_9PHAE)

HSP 1 Score: 130 bits (328), Expect = 7.310e-34
Identity = 61/65 (93.85%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRLADFLGAEMVKDKGLNCRMI+SNRPHGAPVT+RA+PT IFSAEPAVKKHYLRKWLK
Sbjct:  129 GTSQTTARRLADFLGAEMVKDKGLNCRMILSNRPHGAPVTDRAVPTAIFSAEPAVKKHYLRKWLK 193
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: B8BW81_THAPS (DNA polymerase epsilon catalytic subunit n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW81_THAPS)

HSP 1 Score: 112 bits (281), Expect = 1.630e-27
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRL +FLGAE++KDKGLNC+ IIS  PHGAPVT+RA+PT I+ AEPAV KHYLRKWLK
Sbjct:  950 GTSQTTARRLGEFLGAEIIKDKGLNCKFIISQLPHGAPVTDRAVPTAIWKAEPAVMKHYLRKWLK 1014
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: W7TVX1_9STRA (DNA-directed DNA polymerase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVX1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.230e-27
Identity = 51/65 (78.46%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            G S TTA RLADFLG +MVKDKGLNCR++I+NRPHGAPVTERAIPT IFS  P V+KH+LRKWLK
Sbjct: 1054 GASLTTASRLADFLGPDMVKDKGLNCRLVIANRPHGAPVTERAIPTAIFSTAPGVRKHFLRKWLK 1118
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: A0A7S2UKD9_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UKD9_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.710e-27
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRL +FLGAE++KDKGLNC+ II+ RP GAPVTERAIPT I+ AEPAV KH+LRKWLK
Sbjct:  243 GTSQTTARRLGEFLGAEVIKDKGLNCKFIIAERPFGAPVTERAIPTAIWKAEPAVMKHFLRKWLK 307
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: A0A7S1YW09_9STRA (DNA polymerase epsilon catalytic subunit n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1YW09_9STRA)

HSP 1 Score: 110 bits (276), Expect = 7.710e-27
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRL +FLGAE++KDKGLNC+ II+  P+GAPVTERAIPT I+ AEPAV KHYLRKW+K
Sbjct:  271 GTSQTTARRLGEFLGAEIIKDKGLNCKFIIAEHPYGAPVTERAIPTAIWKAEPAVMKHYLRKWMK 335
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: A0A7S2PF68_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PF68_9STRA)

HSP 1 Score: 104 bits (259), Expect = 1.250e-26
Identity = 49/65 (75.38%), Postives = 57/65 (87.69%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRL++FLGA++VKDKGLNC+ IIS  P+GA VTERAIPT I+ AE  V+KHYLRKWLK
Sbjct:  100 GTSQTTARRLSEFLGADIVKDKGLNCQFIISELPYGAAVTERAIPTAIWKAEAPVRKHYLRKWLK 164
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: A0A1E7F5I3_9STRA (DNA polymerase epsilon catalytic subunit (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F5I3_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.680e-26
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRL +FLGAE++KDKGLNC+ II+ +P+GAPVTERAIPT I+ AEPAV +H+LRKWLK
Sbjct:  973 GTSQTTARRLGEFLGAEIIKDKGLNCKFIIAEQPYGAPVTERAIPTAIWKAEPAVMRHFLRKWLK 1037
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BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: A0A448YYZ1_9STRA (DNA polymerase epsilon catalytic subunit n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYZ1_9STRA)

HSP 1 Score: 109 bits (272), Expect = 2.680e-26
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 1 
Query:    1 GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            GTSQTTARRL +FLGAE++KDKGLNC+ II+ +P+GAPVTERAIPT I+ AEPAV +H+LRKWLK
Sbjct: 1096 GTSQTTARRLGEFLGAEIIKDKGLNCKFIIAEQPYGAPVTERAIPTAIWKAEPAVMRHFLRKWLK 1160
[Close]
BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Match: A0A1Y2FYA9_9BASI (DNA polymerase epsilon catalytic subunit n=1 Tax=Leucosporidium creatinivorum TaxID=106004 RepID=A0A1Y2FYA9_9BASI)

HSP 1 Score: 108 bits (269), Expect = 6.820e-26
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    4 TSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFSAEPAVKKHYLRKWLK 195
            TS +TARRLA+FLG +MV+DKGL+CR IIS +PHGAPVTERA+P  IFSAEP+VKKH+LRKWLK
Sbjct: 1086 TSISTARRLAEFLGEQMVRDKGLSCRFIISTKPHGAPVTERAVPVAIFSAEPSVKKHFLRKWLK 1149
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5908.13534.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQC0_ECTSI7.300e-3493.85DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
A0A6H5J9K7_9PHAE7.310e-3493.85DNA polymerase epsilon catalytic subunit n=1 Tax=E... [more]
B8BW81_THAPS1.630e-2778.46DNA polymerase epsilon catalytic subunit n=1 Tax=T... [more]
W7TVX1_9STRA2.230e-2778.46DNA-directed DNA polymerase n=2 Tax=Monodopsidacea... [more]
A0A7S2UKD9_9STRA7.710e-2778.46DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A7S1YW09_9STRA7.710e-2776.92DNA polymerase epsilon catalytic subunit n=1 Tax=D... [more]
A0A7S2PF68_9STRA1.250e-2675.38DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A1E7F5I3_9STRA2.680e-2675.38DNA polymerase epsilon catalytic subunit (Fragment... [more]
A0A448YYZ1_9STRA2.680e-2675.38DNA polymerase epsilon catalytic subunit n=1 Tax=P... [more]
A0A1Y2FYA9_9BASI6.820e-2676.56DNA polymerase epsilon catalytic subunit n=1 Tax=L... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5908contigH-paniculata_contig5908:10972..11166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score131.0
Seed ortholog evalue2.1e-28
Seed eggNOG ortholog2880.D8LQC0
Preferred namePOLE1
KEGG rclassRC02795
KEGG koko:K02324
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko05166,map00230,map00240,map01100,map03030,map03410,map03420,map05166
KEGG ModuleM00263
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0003887,GO:0004518,GO:0004527,GO:0004529,GO:0004536,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005657,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006271,GO:0006272,GO:0006281,GO:0006284,GO:0006287,GO:0006289,GO:0006297,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0008150,GO:0008152,GO:0008296,GO:0008297,GO:0008310,GO:0008408,GO:0008622,GO:0009058,GO:0009059,GO:0009987,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0016787,GO:0016788,GO:0016796,GO:0016895,GO:0018130,GO:0019438,GO:0022616,GO:0031974,GO:0031981,GO:0032991,GO:0033554,GO:0034061,GO:0034641,GO:0034645,GO:0034654,GO:0042575,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045004,GO:0045005,GO:0046483,GO:0050896,GO:0051716,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0090305,GO:0097159,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234
EggNOG free text desc.DNA replication proofreading
EggNOG OGsCOG0417@1,KOG1798@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03032,ko03400
Exons1
Model size195
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930647.1217518-CDS-H-paniculata_contig5908:10971..111661622930647.1217518-CDS-H-paniculata_contig5908:10971..11166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5908 10972..11166 +
1691481388.03271-CDS-H-paniculata_contig5908:10971..111661691481388.03271-CDS-H-paniculata_contig5908:10971..11166Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5908 10972..11166 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5908.13534.1prot_H-paniculata_contig5908.13534.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5908 10972..11166 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5908.13534.1

>prot_H-paniculata_contig5908.13534.1 ID=prot_H-paniculata_contig5908.13534.1|Name=mRNA_H-paniculata_contig5908.13534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=65bp
GTSQTTARRLADFLGAEMVKDKGLNCRMIISNRPHGAPVTERAIPTVIFS
AEPAVKKHYLRKWLK
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mRNA from alignment at H-paniculata_contig5908:10972..11166+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5908.13534.1 ID=mRNA_H-paniculata_contig5908.13534.1|Name=mRNA_H-paniculata_contig5908.13534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=195bp|location=Sequence derived from alignment at H-paniculata_contig5908:10972..11166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTACTAGCCAGACGACGGCCCGTCGACTGGCTGATTTCTTGGGGGCGGA
GATGGTGAAGGACAAGGGCCTTAACTGCCGCATGATCATCAGCAACAGGC
CGCACGGGGCTCCGGTGACCGAACGAGCGATACCGACGGTTATTTTCTCC
GCCGAGCCTGCTGTCAAGAAGCACTACCTCAGGAAGTGGCTCAAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5908:10972..11166+

>mRNA_H-paniculata_contig5908.13534.1 ID=mRNA_H-paniculata_contig5908.13534.1|Name=mRNA_H-paniculata_contig5908.13534.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at H-paniculata_contig5908:10972..11166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTACTAGCCAGACGACGGCCCGTCGACTGGCTGATTTCTTGGGGGCGGA
GATGGTGAAGGACAAGGGCCTTAACTGCCGCATGATCATCAGCAACAGGC
CGCACGGGGCTCCGGTGACCGAACGAGCGATACCGACGGTTATTTTCTCC
GCCGAGCCTGCTGTCAAGAAGCACTACCTCAGGAAGTGGCTCAAGGGTAC
TAGCCAGACGACGGCCCGTCGACTGGCTGATTTCTTGGGGGCGGAGATGG
TGAAGGACAAGGGCCTTAACTGCCGCATGATCATCAGCAACAGGCCGCAC
GGGGCTCCGGTGACCGAACGAGCGATACCGACGGTTATTTTCTCCGCCGA
GCCTGCTGTCAAGAAGCACTACCTCAGGAAGTGGCTCAAG
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