mRNA_H-paniculata_contig5905.13532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5905.13532.1
Unique NamemRNA_H-paniculata_contig5905.13532.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5905.13532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5905contigH-paniculata_contig5905:2483..6150 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size941
Cds size939
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930646.9697242-CDS-H-paniculata_contig5905:2482..26721622930646.9697242-CDS-H-paniculata_contig5905:2482..2672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5905 2483..2672 +
1691481387.9546654-CDS-H-paniculata_contig5905:2482..26721691481387.9546654-CDS-H-paniculata_contig5905:2482..2672Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5905 2483..2672 +
1622930646.9911017-CDS-H-paniculata_contig5905:5401..61501622930646.9911017-CDS-H-paniculata_contig5905:5401..6150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5905 5402..6150 +
1691481387.9697578-CDS-H-paniculata_contig5905:5401..61501691481387.9697578-CDS-H-paniculata_contig5905:5401..6150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5905 5402..6150 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5905.13532.1prot_H-paniculata_contig5905.13532.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5905 2483..6150 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5905.13532.1

>prot_H-paniculata_contig5905.13532.1 ID=prot_H-paniculata_contig5905.13532.1|Name=mRNA_H-paniculata_contig5905.13532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=313bp
ILQSSISTRQTARDYNATATEKSCDSPKPLDCVFEYISQPNPASSCVGKK
SGEQTEVGAKALEACSFCTVPWGSGEQKTAVKYKKKRGVVTRNGKKIKRG
GGKQKHHRRLGTELNKDSKIWSRSRIVGRRERARRHQRDQLERRAEVPGD
GIFWPSTPTITFNDAGEASASENIASTTSGSSACGSDPSSTINSILPSAP
RQEDVIATTTTTTTSELLLSPPPAAVGSSSSSSSSSSFVRHDLPSHIGHF
IYPVTNSQQQGHHYHHYHHQQDGRDVAGTGAANKNNNGAAAVASMATVGN
GNGRERDRVSLDG
back to top

mRNA from alignment at H-paniculata_contig5905:2483..6150+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5905.13532.1 ID=mRNA_H-paniculata_contig5905.13532.1|Name=mRNA_H-paniculata_contig5905.13532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3668bp|location=Sequence derived from alignment at H-paniculata_contig5905:2483..6150+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCTTCAGTCCTCTATCTCTACACGACAGACCGCGAGGGACTACAACGC
AACGGCAACGGAAAAGAGTTGTGATAGCCCCAAACCCTTAGACTGCGTAT
TCGAATATATCTCTCAACCCAATCCAGCCTCTTCCTGCGTGGGGAAAAAA
TCCGGTGAACAGACCGAAGTCGGGGCAAAGGCGCTTGAAGGTGCGCGAGT
CAAATTTTCCAGGAAGGATTCCTCTATATTTTGGTTCCGTTTCTCCCTCG
TTCTAACCCCTCTTAGGACAGACAGAGCAGCAGGACAGGCAATTAGCTCG
GTACAGATAGACAGAGCTTCACAGGCTACGGAAAGGGTTATTGATCGAAA
GGTAGGAGATGTACACGCAGTACGACATGCAATAGAGGCAGGGAGTGAGT
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGGCA
GACACAAAAAGAGAGACAATATTTGCATACCCAAAAAATAGCTATTTAGC
CAAGCATTATAAAGCGAGGTCAGATTTATTTCGGGTTGTGATTGGGCAAA
ATTCACCGTGATTTACTTACATTCTATGTTGGCGGAATGGCCGACCGTAC
TTGGTCATGCCTCTGTTCGGGAATTTCTGATTTGACTGTTGTCGCCATCA
AGTGAAGTAGCCGCTGCGAATCACTCCCGCTGAGGCAACACTCATAATAT
TGCCAGCCACAGCGAATAACTGGGAGAAGACATACCCTACACATGTGAGC
CGTTCTACTATCTGCTGTGTCTACCCTGTCTGTACGGCTGGTGAACTACA
CCCTGGTGTGTCAGGTGTGCCTCGGGCTGCTCGTTCTGTTTTTGTGTCCG
ATGGTTTGCTGTTCTCTGACTTGTAATAAAAAAAGTTGACGGCCCGTGCG
CGTAGCTGTTGCTCGCGTGCCGTGAGCTTTTCTACAGTGCTTTATTGTAT
GTAGTCACAGACCTTTGTCACGAGTGTGCATCATTAAGGTCTGTGGCATT
TTAACAGGGCTGGCTCTTTAGCAACAACGTGGAAGGTGGTACCTGAACAA
GGATTGATGATGTACTTCTCTTACACAGTGGTAACGTAATAGCTTTGATC
TTTCGAGTCTCAGAGTCGACAACCTCTTAGTAGCTGGGTGTAATTTCTTC
TCTTGCCTCCGATTAATCGCTCCGCACCCGCACCCAGTAGCCAACGTTTG
TCGTATATTACCCCAAACAACACACACGATAGCTACAGTCGTTCATGCAA
AGCAACGCACTTCATTTTTTTATAATCCAACAGCCCTTTGACCATACATC
TATCTAACGCGCTGCTGAAGTGCAGAAGTAGAGATCCCAACGATCCGTAT
TACATTCAGTACATACAGATTTTGTTTTGTAATTTTCCGCCTGTTTCAAT
GTACCGTAACAGTCAATCGAGCCCCGAATGGATCTGACTGTCATCACAAA
AACAGACCAGGCAGCAGCAGGCCCAAAATCAACAGTTTTTTGCTTGTATT
CGGCGACTTTTCTCTGCCGAACCCCCGAGCCCTGAGACCTTATGATGGAC
GTCGTTGACCTCCTGCCACCTGTCGGCAACTTGTTTGTAACCTCTTTTAT
GAGCACTCGGCGCCTTTGGAGGGTGGTATGACCAGACAGACGGTGCCGAT
TCACAATGCCCCTGCGTAACAGCAGGGCTGTGCGCAACAGTAAGTAGTGG
CCAACTTACTGACTAACCGTCTGTCAGTTCTCTGTGTGTACCGTTGTACA
GTATTGCAGTTCGTGGAAATATCGCCGTTTGTCGCTCGTTAGCCTACTAG
TCTACCGTTGGACAATTTGCTGCTCGTCGTTGCAAGATATGCCACGGGTT
CACGTCCCTGTCTGTGCAATATGATCTCGCCAACTGTTTTTTTGGTTTGT
TGTTGGTTCTACCCTGAGAGCAGTGAGTATAGGTCATACAGCAAATACAT
GGCATGCGGCGGGCATTGCTTCTGTACATTTTTATGGCCGTGTTCGTTCT
ATCCTGGCTCATATATACACCGAACCCCCAACACGCCCACGTAGTTTCTA
TCACCACCGGCCACGCCAATACAACCACAGCATTAAGTCAGTACAGGATA
TATATAATTATATATATATAATTATATACATCCAGTGACAGCCGCGAAAA
CCTGACTGCATATAAATACACAACACTGTCAAAGACATGAAGCCTAAGCT
GTTGTTTTGAACGGCCGGTTGAAGACACTGCGCGTTAAACATGGTGGCTT
GCCATGTAGAAGTCAACTTCGGCGGCTATATTGCGTAAAATTACAATTCC
ATCGAGGGGTCACCCCTCTCAATCTGTTGTGCATACATGCAGGACATCCC
TAGACTACACCGTACTGTCTATCGTATTTTCTGTGCACCAAAATCAGCGC
CTTTCTTATTCCTGTATCAAATCGATGACCATTGCTCGGTTCTTTACATA
CTCTACGGACATACACACGCATACAACACTGACTGCCTCCTGTAAGCCGA
TAACTCAGCTTGCATAAGGCTGCATTACAGCAACCAGCTGGATACTGCTC
TATTCACGACACGAACATGACTTGAACTTCATAACATCACTTTGGATCGG
GGAGAACTAAATGGAACTTTTCAATTTTTAAAAAAAAAACACCGTGGTAG
CAAATAGTATTGGTTTCCCCCGTTCTCAAAACCTTCGGGGGAGAGAAAAA
CGAACGTTCCACACGGTCTGGAGGCTTTCTTTCGGGGCGTCCTCTTTCTA
ATGAATACACCCTAAATAGGTTTCACTCTGCCGCAAAAATCGTGGTTGAT
TCATCTCGCTCTGTCTTGTTCCCTCCGTTTTTGTCTCCCTCACCTAAATG
CCGCGCACCTATTGAACAGCCTGTAGCTTCTGTACCGTTCCCTGGGGGTC
GGGGGAGCAAAAGACGGCGGTGAAATACAAAAAGAAACGCGGGGTGGTTA
CGCGCAACGGGAAAAAAATAAAGCGCGGTGGGGGAAAGCAGAAGCATCAT
CGGCGTCTGGGCACAGAGCTCAACAAAGATAGCAAGATTTGGTCACGCAG
TCGAATCGTAGGGAGGCGAGAGCGGGCACGCCGTCACCAGCGTGATCAGT
TAGAACGACGTGCCGAGGTCCCCGGCGACGGTATCTTTTGGCCGAGCACA
CCAACAATCACCTTCAACGACGCCGGTGAAGCGTCTGCCTCTGAAAACAT
CGCCAGCACCACCTCTGGAAGTTCCGCCTGTGGTTCAGATCCTTCCTCGA
CTATTAACAGCATACTACCAAGCGCCCCGCGGCAGGAAGACGTAATAGCA
ACGACGACGACAACGACGACAAGCGAGCTGTTGCTTTCCCCTCCTCCTGC
AGCTGTTGGCTCCAGCAGCAGCAGCAGCAGCAGCAGTAGCTTCGTCCGTC
ACGATCTTCCTTCCCACATCGGACATTTCATTTATCCTGTAACCAATAGC
CAACAACAAGGCCATCACTACCACCACTACCACCACCAGCAAGACGGACG
CGACGTCGCGGGCACCGGCGCCGCCAACAAGAACAACAACGGAGCGGCGG
CGGTGGCCTCCATGGCAACAGTAGGAAACGGCAACGGGAGGGAAAGGGAT
CGAGTTTCCCTGGACGGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5905:2483..6150+

>mRNA_H-paniculata_contig5905.13532.1 ID=mRNA_H-paniculata_contig5905.13532.1|Name=mRNA_H-paniculata_contig5905.13532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1878bp|location=Sequence derived from alignment at H-paniculata_contig5905:2483..6150+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATTCTTCAGTCCTCTATCTCTACACGACAGACCGCGAGGGACTACAACGC
AACGGCAACGGAAAAGAGTTGTGATAGCCCCAAACCCTTAGACTGCGTAT
TCGAATATATCTCTCAACCCAATCCAGCCTCTTCCTGCGTGGGGAAAAAA
TCCGGTGAACAGACCGAAGTCGGGGCAAAGGCGCTTGAAGATTCTTCAGT
CCTCTATCTCTACACGACAGACCGCGAGGGACTACAACGCAACGGCAACG
GAAAAGAGTTGTGATAGCCCCAAACCCTTAGACTGCGTATTCGAATATAT
CTCTCAACCCAATCCAGCCTCTTCCTGCGTGGGGAAAAAATCCGGTGAAC
AGACCGAAGTCGGGGCAAAGGCGCTTGAAGCCTGTAGCTTCTGTACCGTT
CCCTGGGGGTCGGGGGAGCAAAAGACGGCGGTGAAATACAAAAAGAAACG
CGGGGTGGTTACGCGCAACGGGAAAAAAATAAAGCGCGGTGGGGGAAAGC
AGAAGCATCATCGGCGTCTGGGCACAGAGCTCAACAAAGATAGCAAGATT
TGGTCACGCAGTCGAATCGTAGGGAGGCGAGAGCGGGCACGCCGTCACCA
GCGTGATCAGTTAGAACGACGTGCCGAGGTCCCCGGCGACGGTATCTTTT
GGCCGAGCACACCAACAATCACCTTCAACGACGCCGGTGAAGCGTCTGCC
TCTGAAAACATCGCCAGCACCACCTCTGGAAGTTCCGCCTGTGGTTCAGA
TCCTTCCTCGACTATTAACAGCATACTACCAAGCGCCCCGCGGCAGGAAG
ACGTAATAGCAACGACGACGACAACGACGACAAGCGAGCTGTTGCTTTCC
CCTCCTCCTGCAGCTGTTGGCTCCAGCAGCAGCAGCAGCAGCAGCAGTAG
CTTCGTCCGTCACGATCTTCCTTCCCACATCGGACATTTCATTTATCCTG
TAACCAATAGCCAACAACAAGGCCATCACTACCACCACTACCACCACCAG
CAAGACGGACGCGACGTCGCGGGCACCGGCGCCGCCAACAAGAACAACAA
CGGAGCGGCGGCGGTGGCCTCCATGGCAACAGTAGGAAACGGCAACGGGA
GGGAAAGGGATCGAGTTTCCCTGGACGGACCTGTAGCTTCTGTACCGTTC
CCTGGGGGTCGGGGGAGCAAAAGACGGCGGTGAAATACAAAAAGAAACGC
GGGGTGGTTACGCGCAACGGGAAAAAAATAAAGCGCGGTGGGGGAAAGCA
GAAGCATCATCGGCGTCTGGGCACAGAGCTCAACAAAGATAGCAAGATTT
GGTCACGCAGTCGAATCGTAGGGAGGCGAGAGCGGGCACGCCGTCACCAG
CGTGATCAGTTAGAACGACGTGCCGAGGTCCCCGGCGACGGTATCTTTTG
GCCGAGCACACCAACAATCACCTTCAACGACGCCGGTGAAGCGTCTGCCT
CTGAAAACATCGCCAGCACCACCTCTGGAAGTTCCGCCTGTGGTTCAGAT
CCTTCCTCGACTATTAACAGCATACTACCAAGCGCCCCGCGGCAGGAAGA
CGTAATAGCAACGACGACGACAACGACGACAAGCGAGCTGTTGCTTTCCC
CTCCTCCTGCAGCTGTTGGCTCCAGCAGCAGCAGCAGCAGCAGCAGTAGC
TTCGTCCGTCACGATCTTCCTTCCCACATCGGACATTTCATTTATCCTGT
AACCAATAGCCAACAACAAGGCCATCACTACCACCACTACCACCACCAGC
AAGACGGACGCGACGTCGCGGGCACCGGCGCCGCCAACAAGAACAACAAC
GGAGCGGCGGCGGTGGCCTCCATGGCAACAGTAGGAAACGGCAACGGGAG
GGAAAGGGATCGAGTTTCCCTGGACGGA
back to top