mRNA_H-paniculata_contig59029.13530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59029.13530.1
Unique NamemRNA_H-paniculata_contig59029.13530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A0S7KIZ2_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIZ2_9TELE)

HSP 1 Score: 92.4 bits (228), Expect = 2.190e-20
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   10 LLHERLGHVRDLPTVARQ-QGIRLSG--KLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPVD-KSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            L H+RLGH   L  +     G++ S   +L  C AC  G+ ++QP +   E R+   L+L+H+++ GP+  +S  G ++   F+DD+SR CKVY ++  SE L   K+FER  +   G ++ RLRSD GG
Sbjct:   56 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECGHKVARLRSDNGG 185          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A4Y1REW6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1REW6_PRUDU)

HSP 1 Score: 93.6 bits (231), Expect = 1.200e-19
Identity = 51/136 (37.50%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    1 DTKLLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPV-DKSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            D  + H RLGH+        QQ   + G      K GVC  C  G++ ++P E  +  R   PLEL+HT++ GP+ ++S  G ++   F+DDYSRMC VY LR  S  +   K+F+  +   +G  +K+LRSD+GG
Sbjct:  370 DPWIWHRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGG 505          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A4Y1R3A1_PRUDU (BURP domain-containing protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1R3A1_PRUDU)

HSP 1 Score: 93.6 bits (231), Expect = 1.210e-19
Identity = 51/136 (37.50%), Postives = 76/136 (55.88%), Query Frame = 1
Query:    1 DTKLLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPV-DKSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            D  + H RLGH+        QQ   + G      K GVC  C  G++ ++P E  +  R   PLEL+HT++ GP+ ++S  G ++   F+DDYSRMC VY LR  S  +   K+F+  +   +G  +K+LRSD+GG
Sbjct:   62 DPWIWHRRLGHLNFASMKKMQQTQMVLGLPDFSEKEGVCEGCVYGKSHREPFENEKPWRAKNPLELIHTDVCGPMQNESIGGNKYFITFIDDYSRMCWVYFLRNKSSVISVFKKFKVFVELQSGFNLKKLRSDRGG 197          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A0S7KIW8_9TELE (POLX (Fragment) n=1 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7KIW8_9TELE)

HSP 1 Score: 92.4 bits (228), Expect = 2.910e-19
Identity = 49/130 (37.69%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   10 LLHERLGHVRDLPTVARQ-QGIRLSG--KLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPVD-KSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            L H+RLGH   L  +     G++ S   +L  C AC  G+ ++QP +   E R+   L+L+H+++ GP+  +S  G ++   F+DD+SR CKVY ++  SE L   K+FER  +   G ++ RLRSD GG
Sbjct:  427 LWHQRLGHTTKLKKLGDLVNGVKFSADKELPFCEACVDGKLTRQPCKAVGEIRSKRKLQLIHSDVCGPMQTESIGGSKYFVTFIDDFSRCCKVYFMKHKSEVLSKFKEFERTFSNECGHKVARLRSDNGG 556          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A6D2KNF9_9BRAS (gag_pre-integrs domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2KNF9_9BRAS)

HSP 1 Score: 84.7 bits (208), Expect = 5.060e-18
Identity = 50/136 (36.76%), Postives = 72/136 (52.94%), Query Frame = 1
Query:    1 DTKLLHERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPVD-KSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            + ++ H+RLGHVR+      Q    + G         VC AC  G+ S++   K  + +T   LE+VHT++ GP+  K   G R+  +F+DDY+ MC VY LRQ SE   A K     + + +   IK LRSD GG
Sbjct:   29 EMEIWHKRLGHVRNGRLQQMQDKYLVKGLPKFQVTKEVCEACNLGKQSRKSFPKKSQTKTQAKLEIVHTDLCGPMQHKYLEGSRYFLLFLDDYTDMCWVYFLRQKSETFLAFKNCRAVVEKQSDCTIKTLRSDGGG 164          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A5C3FVP2_PSEA2 (Uncharacterized protein n=2 Tax=Pseudozyma antarctica TaxID=84753 RepID=A0A5C3FVP2_PSEA2)

HSP 1 Score: 88.2 bits (217), Expect = 9.400e-18
Identity = 49/130 (37.69%), Postives = 79/130 (60.77%), Query Frame = 1
Query:   16 HERLGH-----VRDLPTVARQQGIRLSGKLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPV-DKSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            H+RLGH     +RD+   A + GI+L  +   C  CE G+++K+   K+   R+ +PLELV++++ GP+ D + +G R+A  F+DDYS+    Y +   SE L  L+ F+  + +  G ++KRLRSD GG
Sbjct:  457 HDRLGHPGLERLRDVAKYAERLGIKLPTRDTKCETCEVGKSTKRAF-KHAHARSQKPLELVYSDVVGPMPDTTSQGYRYAVTFIDDYSKYSTAYLMSHKSEVLDHLQDFKTTMEKQVGHQMKRLRSDNGG 585          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A5N6LQL6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6LQL6_9ASTR)

HSP 1 Score: 87.4 bits (215), Expect = 1.720e-17
Identity = 54/136 (39.71%), Postives = 77/136 (56.62%), Query Frame = 1
Query:    4 TKLLHERLGHVR--DLPTVARQQGIRLSGKL-----GVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPVDK-SFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            T+L H+RLGHV    L  + +Q+ +     L     GVCS C+ G+A + P  K  E +   PLELVHT++ GPV + S +G +F   F+DD SR   +Y +++ SE     KQFE D     G +++ LRSD GG
Sbjct:  508 TELWHQRLGHVGLDKLSLIVKQKLLVGLPNLEVQKDGVCSGCQYGKAIQLPF-KSSEYKAATPLELVHTDVFGPVKQPSIQGLKFMVSFIDDSSRFAWIYFMKEKSEVFSKFKQFELDAELMTGYKVRCLRSDNGG 642          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A6D2HJM6_9BRAS (Uncharacterized protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2HJM6_9BRAS)

HSP 1 Score: 86.7 bits (213), Expect = 3.300e-17
Identity = 49/131 (37.40%), Postives = 73/131 (55.73%), Query Frame = 1
Query:   16 HERLGHVRDLPTVARQQGIRLSG------KLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPV-DKSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            H+RLGHV        Q    + G      +   C AC  G+ S++   K  + +T E LE+VHT++ GP+ ++S  G R+  +F+DDY+ MC VY L+Q SE     K+F+  + + +G  IK LRSD GG
Sbjct:  457 HKRLGHVGKRRLQEMQDKDLVKGLPSFKVEKEACKACNLGKQSRKSFPKESQTKTKEKLEIVHTDVCGPMQNQSIDGSRYYVLFLDDYTHMCWVYFLKQKSETFLKFKKFKAMVEKQSGCVIKTLRSDGGG 587          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 86.7 bits (213), Expect = 3.360e-17
Identity = 53/136 (38.97%), Postives = 79/136 (58.09%), Query Frame = 1
Query:    1 DTKLLHERLGHV-----RDLPTVARQQGI-RLSGKLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPVD-KSFRGCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            D+ L H R GH+     + L   +  +G+  ++    +C AC KG+  +Q  E  R  R   PLE+VHT+IAGP D  S  G R+   F+DD+SR C +Y L++ SEAL  L++F+    + +G  +K LRSD+GG
Sbjct:  326 DSWLWHLRYGHLGFSGLKLLSKTSMVKGLPEINPPNQLCEACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGG 461          
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Match: A0A5N6M7D6_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M7D6_9ASTR)

HSP 1 Score: 86.3 bits (212), Expect = 4.320e-17
Identity = 47/136 (34.56%), Postives = 83/136 (61.03%), Query Frame = 1
Query:    1 DTKLLHERLGHV--RDLPTVARQQGIR----LSGKLGVCSACEKGRASKQPVEKYREERTTEPLELVHTNIAGPVDKSFR-GCRFATIFVDDYSRMCKVYTLRQTSEALWALKQFERDIARANGLRIKRLRSDQGG 387
            +T++ H RL HV  + + T+ +++ +R    +SGK  +C  C  G+ +++ + K    R+TE LEL+HT++ GP+  + + G R+  +F+DD +R   VY L+   E+  A K+F+  +   +G +IK LRSD+GG
Sbjct:  440 ETQVWHRRLAHVNYKAIKTMQQKEMVRGLPEVSGKAMICETCNVGKQNRENIPKKSWWRSTEKLELIHTDLCGPITPASQSGKRYVLVFIDDLTRKTWVYLLQFKHESFDAFKRFKVAVENESGCKIKALRSDRGG 575          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59029.13530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0S7KIZ2_9TELE2.190e-2037.69POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A4Y1REW6_PRUDU1.200e-1937.50Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A4Y1R3A1_PRUDU1.210e-1937.50BURP domain-containing protein n=1 Tax=Prunus dulc... [more]
A0A0S7KIW8_9TELE2.910e-1937.69POLX (Fragment) n=1 Tax=Poeciliopsis prolifica Tax... [more]
A0A6D2KNF9_9BRAS5.060e-1836.76gag_pre-integrs domain-containing protein n=1 Tax=... [more]
A0A5C3FVP2_PSEA29.400e-1837.69Uncharacterized protein n=2 Tax=Pseudozyma antarct... [more]
A0A5N6LQL6_9ASTR1.720e-1739.71Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A6D2HJM6_9BRAS3.300e-1737.40Uncharacterized protein n=1 Tax=Microthlaspi errat... [more]
A0A6A3BY51_HIBSY3.360e-1738.97Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A5N6M7D6_9ASTR4.320e-1734.56Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59029contigH-paniculata_contig59029:304..693 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score82.8
Seed ortholog evalue1.3e-13
Seed eggNOG ortholog400682.PAC_15703055
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs3ACW4@33154,3BVPH@33208,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Exons1
Model size390
Cds size390
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930646.745542-CDS-H-paniculata_contig59029:303..6931622930646.745542-CDS-H-paniculata_contig59029:303..693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59029 304..693 -
1691481387.8574598-CDS-H-paniculata_contig59029:303..6931691481387.8574598-CDS-H-paniculata_contig59029:303..693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59029 304..693 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59029.13530.1prot_H-paniculata_contig59029.13530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59029 304..693 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59029.13530.1

>prot_H-paniculata_contig59029.13530.1 ID=prot_H-paniculata_contig59029.13530.1|Name=mRNA_H-paniculata_contig59029.13530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=130bp
DTKLLHERLGHVRDLPTVARQQGIRLSGKLGVCSACEKGRASKQPVEKYR
EERTTEPLELVHTNIAGPVDKSFRGCRFATIFVDDYSRMCKVYTLRQTSE
ALWALKQFERDIARANGLRIKRLRSDQGG*
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mRNA from alignment at H-paniculata_contig59029:304..693-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59029.13530.1 ID=mRNA_H-paniculata_contig59029.13530.1|Name=mRNA_H-paniculata_contig59029.13530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=390bp|location=Sequence derived from alignment at H-paniculata_contig59029:304..693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGATCTTCCCAC AGTCGCGCGGCAACAAGGCATAAGGTTAAGCGGAAAGCTCGGTGTCTGCT CGGCGTGTGAGAAGGGGAGAGCGTCGAAGCAGCCTGTAGAAAAGTATCGA GAAGAGCGGACGACCGAGCCATTGGAGCTAGTGCACACCAACATAGCCGG GCCAGTGGACAAGTCCTTCAGAGGTTGTCGCTTCGCCACCATCTTCGTCG ACGACTACAGCAGAATGTGCAAAGTCTATACCTTGCGACAAACGTCGGAG GCGCTATGGGCCCTGAAGCAATTCGAGAGGGATATAGCGAGGGCAAACGG TTTGCGGATTAAGCGCCTTCGGTCAGATCAGGGAGGATAA
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Coding sequence (CDS) from alignment at H-paniculata_contig59029:304..693-

>mRNA_H-paniculata_contig59029.13530.1 ID=mRNA_H-paniculata_contig59029.13530.1|Name=mRNA_H-paniculata_contig59029.13530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=780bp|location=Sequence derived from alignment at H-paniculata_contig59029:304..693- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GACACCAAGTTACTACACGAGCGACTTGGGCATGTTCGAGATCTTCCCAC
AGTCGCGCGGCAACAAGGCATAAGGTTAAGCGGAAAGCTCGGTGTCTGCT
CGGCGTGTGAGAAGGGGAGAGCGTCGAAGCAGCCTGTAGAAAAGTATCGA
GAAGAGCGGACGACCGAGCCATTGGAGCTAGTGCACACCAACATAGCCGG
GCCAGTGGACAAGTCCTTCAGAGGTTGTCGCTTCGCCACCATCTTCGTCG
ACGACTACAGCAGAATGTGCAAAGTCTATACCTTGCGACAAACGTCGGAG
GCGCTATGGGCCCTGAAGCAATTCGAGAGGGATATAGCGAGGGCAAACGG
TTTGCGGATTAAGCGCCTTCGGTCAGATCAGGGAGGATAAGACACCAAGT
TACTACACGAGCGACTTGGGCATGTTCGAGATCTTCCCACAGTCGCGCGG
CAACAAGGCATAAGGTTAAGCGGAAAGCTCGGTGTCTGCTCGGCGTGTGA
GAAGGGGAGAGCGTCGAAGCAGCCTGTAGAAAAGTATCGAGAAGAGCGGA
CGACCGAGCCATTGGAGCTAGTGCACACCAACATAGCCGGGCCAGTGGAC
AAGTCCTTCAGAGGTTGTCGCTTCGCCACCATCTTCGTCGACGACTACAG
CAGAATGTGCAAAGTCTATACCTTGCGACAAACGTCGGAGGCGCTATGGG
CCCTGAAGCAATTCGAGAGGGATATAGCGAGGGCAAACGGTTTGCGGATT
AAGCGCCTTCGGTCAGATCAGGGAGGATAA
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