mRNA_H-paniculata_contig59028.13529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig59028.13529.1
Unique NamemRNA_H-paniculata_contig59028.13529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.640e-14
Identity = 53/153 (34.64%), Postives = 78/153 (50.98%), Query Frame = 1
Query:   34 SGIFSGNKKNVAETRV-----CFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPV-DDREEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 471
            SG  +G K N++  R+     CF C + GH+K  CP     G+        EED      + R   W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  +  +GL V
Sbjct:  101 SGRNNGRKDNISRKRIGFEGKCFNCDKFGHMKRECPDFKGPGKN-------EEDAVFAAGESRSSGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.790e-14
Identity = 48/152 (31.58%), Postives = 81/152 (53.29%), Query Frame = 1
Query:   22 GGTNSGIFSGNKKNVAETR-VCFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 471
            GG   G  S N + +  ++  CF C + GH+K +CP ++        +  I ED+S         W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+  +  +G++V
Sbjct:  187 GGKGYGRKSNNGRRLVGSKGKCFNCGQAGHMKRDCPVKVNGDSNDDSVFAIGEDRSAE-------WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSV 328          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A225X513_9STRA (Integrase, catalytic core protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X513_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 9.840e-13
Identity = 40/118 (33.90%), Postives = 64/118 (54.24%), Query Frame = 1
Query:   73 TRVCFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLD 423
            T  CF C + GH+K+ CP++   G   + +  + ED+S         W+ DSGATAHMTP  + +++Y   S  + VT+A+G+ + + G G + +   D   I    +  V H+PGLD
Sbjct:   40 TGKCFGCGQVGHMKLECPEKANGGSHEASVFAVGEDRSAG-------WLIDSGATAHMTPHRDDLYEYSAMSAEMNVTIADGKKIRVAGTGSVRLKGIDGKYIR---MVEVLHIPGLD 147          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 1.650e-12
Identity = 49/153 (32.03%), Postives = 76/153 (49.67%), Query Frame = 1
Query:   31 NSGIFSGNK-----KNVAETRVCFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 471
            N+  F G K     KN A    C+ C + GH+K +CP      +  +V  + +         R   W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  +  +G++V
Sbjct:  205 NAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPSSNVSNDEEAVFAVGK--------GRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSV 346          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A2K3L826_TRIPR (Copia-type polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3L826_TRIPR)

HSP 1 Score: 72.8 bits (177), Expect = 6.070e-12
Identity = 45/143 (31.47%), Postives = 76/143 (53.15%), Query Frame = 1
Query:   82 CFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDD--------REEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTVCLKEE 486
            C++CH+ GH + NCP+  W    V+  E+ EE++++ + D        REE W  DSG + HMT   E + D++      V + N   + I G G + +  K  G++H   ++ V ++PGL +NL S+  +  + LTV  K +
Sbjct:  233 CYKCHKFGHYQSNCPE--WDN--VNFCEIDEEEETLLMADVNSIENNPREEMWYLDSGCSNHMTGKKEWLHDFDGSFTESVKLGNDSKMAIMGKGNVKL--KIAGKVHV--ITDVYYIPGLSSNLLSVDQLQQKNLTVVFKND 367          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A6A4BQ03_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4BQ03_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.200e-11
Identity = 44/131 (33.59%), Postives = 70/131 (53.44%), Query Frame = 1
Query:   82 CFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 471
            CF C + GH+K +CP      +  +V+ +    KS     R   W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S+  +  +G++V
Sbjct:  206 CFNCSQVGHMKRDCPDPNMGNDNDAVLAV---GKS-----RSAGWLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSV 325          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A225V0K2_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0K2_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.710e-11
Identity = 40/133 (30.08%), Postives = 71/133 (53.38%), Query Frame = 1
Query:   76 RVCFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 471
            R  F+C + G +K  CP++   G     +  + ED+S         W+ DSGAT HMTP  + +++Y T  ++++V +A+G+ + + G G + +   D   I    +  V HVPG D  L S+  + ++G++V
Sbjct:  130 REVFRCGQVGLMKRECPEQANGGSHEDSVFAVGEDRSAG-------WLIDSGATVHMTPHRDDLYEYSTIPADMYVAIADGKKIRVAGTGSVRLKGIDGKSIR---MVEVLHVPGFDRRLLSVGKLADRGMSV 252          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A6A3X5U6_9STRA (CCHC-type domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3X5U6_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.630e-11
Identity = 42/131 (32.06%), Postives = 71/131 (54.20%), Query Frame = 1
Query:   82 CFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 471
            CF C + GH+K +CP+    G+    +  + + +S         W+ DSGATAHMTP    +F+Y+   SN+ VT+A+G+ + + G G + +   D   I       V ++PGLD  L S++ +  +G++V
Sbjct:  230 CFNCGQMGHMKRDCPEPN-AGKDDDAVFAVGKSRSAG-------WLIDSGATAHMTPHRNDLFEYKDLDSNIEVTIADGKKIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVRRLAERGMSV 349          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: H3H572_PHYRM (Uncharacterized protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H572_PHYRM)

HSP 1 Score: 69.7 bits (169), Expect = 7.710e-11
Identity = 47/151 (31.13%), Postives = 74/151 (49.01%), Query Frame = 1
Query:   22 GGTNSGIFSGNKKNVAETRVCFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIVVNQGLTV 471
            GG  S  F G++KN      CF C + GH+K +CP           +  + + +S         W+ DSGATAHMTP    +F+Y+   S++ VT+A+G+ + + G G + +   D   I       V  +PGLD  L S+  +  +G+ V
Sbjct:  211 GGKGSKAF-GSRKNGGFKGKCFNCGQVGHMKRDCPDPNAGNNDDDAVFAVGKSRSAA-------WLIDSGATAHMTPHRNDLFEYKDLDSDVEVTIADGKKIRVVGTGSVRLTGIDGTRIKMID---VLFIPGLDRQLLSVSRLAERGMIV 350          
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Match: A0A225WJQ1_9STRA (Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WJQ1_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.740e-10
Identity = 39/121 (32.23%), Postives = 63/121 (52.07%), Query Frame = 1
Query:   82 CFQCHEPGHLKMNCPQRIWQGEFVSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSL 441
            CF C +  H+K  CP++   G     +  +EED+S         W+ DSGATAHMTP  + +++Y + S  ++VT+A+G  L + G G + +   D   I    +  V ++ GLD    S+
Sbjct:  224 CFGCGQVSHMKRECPEKANGGSHEDSVFAVEEDRSAG-------WLIDSGATAHMTPHRDDLYEYSSMSAEMYVTIADGNKLRVAGTGSVRLKGIDGKSIR---MVEVLYILGLDRRSLSV 334          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig59028.13529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A3M6VPY8_9STRA1.640e-1434.64CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225UGS0_9STRA2.790e-1431.58Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A225X513_9STRA9.840e-1333.90Integrase, catalytic core protein n=1 Tax=Phytopht... [more]
A0A329SN38_9STRA1.650e-1232.03Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2K3L826_TRIPR6.070e-1231.47Copia-type polyprotein (Fragment) n=1 Tax=Trifoliu... [more]
A0A6A4BQ03_9STRA2.200e-1133.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A225V0K2_9STRA2.710e-1130.08Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A6A3X5U6_9STRA3.630e-1132.06CCHC-type domain-containing protein n=5 Tax=Phytop... [more]
H3H572_PHYRM7.710e-1131.13Uncharacterized protein n=2 Tax=Phytophthora ramor... [more]
A0A225WJQ1_9STRA1.740e-1032.23Polyprotein n=1 Tax=Phytophthora megakarya TaxID=4... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig59028contigH-paniculata_contig59028:259..858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue8.6e-15
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size486
Cds size486
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930646.6604633-CDS-H-paniculata_contig59028:258..6081622930646.6604633-CDS-H-paniculata_contig59028:258..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59028 259..608 -
1691481387.823237-CDS-H-paniculata_contig59028:258..6081691481387.823237-CDS-H-paniculata_contig59028:258..608Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59028 259..608 -
1622930646.678305-CDS-H-paniculata_contig59028:722..8581622930646.678305-CDS-H-paniculata_contig59028:722..858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59028 723..858 -
1691481387.8412821-CDS-H-paniculata_contig59028:722..8581691481387.8412821-CDS-H-paniculata_contig59028:722..858Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig59028 723..858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig59028.13529.1prot_H-paniculata_contig59028.13529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig59028 259..858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig59028.13529.1

>prot_H-paniculata_contig59028.13529.1 ID=prot_H-paniculata_contig59028.13529.1|Name=mRNA_H-paniculata_contig59028.13529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=162bp
GKANGTGGGTNSGIFSGNKKNVAETRVCFQCHEPGHLKMNCPQRIWQGEF
VSVIELIEEDKSVPVDDREEFWVADSGATAHMTPSNELMFDYETCSNLFV
TVANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFSLQIV
VNQGLTVCLKEE
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mRNA from alignment at H-paniculata_contig59028:259..858-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig59028.13529.1 ID=mRNA_H-paniculata_contig59028.13529.1|Name=mRNA_H-paniculata_contig59028.13529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig59028:259..858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTAAGGCCAATGGCACCGGAGGGGGTACGAACAGTGGTATTTTTTCCGG AAACAAGAAAAATGTCGCTGAAACTCGTGTTTGTTTTCAATGTCATGAGC CAGGTCATCTGAAGATGAATTGTCCTCAGCGCATATGTCCGATCTGCAAA GGGATCGGTCATGGCGAGAGCAGTCACAGGTTGTCAGCAATGTTCTCTTC GGATGGGTTCAGGGACATTGTTGAACACGGTTTCACGGCCAGAGTGGCAG GGCAGGGCGAGTTTGTTTCGGTAATTGAGCTTATTGAAGAGGACAAGTCA GTACCAGTAGATGATCGTGAGGAGTTTTGGGTGGCCGACAGTGGGGCTAC GGCCCACATGACTCCGTCTAACGAATTAATGTTTGATTACGAAACCTGCA GTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGA TATGGTAAGATGTTGGTATGGACGAAAGATCGGGGCGAGATACACAAATT CAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTT CCCTACAGATTGTAGTGAACCAGGGACTTACTGTCTGTTTGAAGGAGGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig59028:259..858-

>mRNA_H-paniculata_contig59028.13529.1 ID=mRNA_H-paniculata_contig59028.13529.1|Name=mRNA_H-paniculata_contig59028.13529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=972bp|location=Sequence derived from alignment at H-paniculata_contig59028:259..858- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTAAGGCCAATGGCACCGGAGGGGGTACGAACAGTGGTATTTTTTCCGG
AAACAAGAAAAATGTCGCTGAAACTCGTGTTTGTTTTCAATGTCATGAGC
CAGGTCATCTGAAGATGAATTGTCCTCAGCGCATATGGTAAGGCCAATGG
CACCGGAGGGGGTACGAACAGTGGTATTTTTTCCGGAAACAAGAAAAATG
TCGCTGAAACTCGTGTTTGTTTTCAATGTCATGAGCCAGGTCATCTGAAG
ATGAATTGTCCTCAGCGCATATGGCAGGGCGAGTTTGTTTCGGTAATTGA
GCTTATTGAAGAGGACAAGTCAGTACCAGTAGATGATCGTGAGGAGTTTT
GGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATTA
ATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGG
CGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAAG
ATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCG
GGCCTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAGGGACT
TACTGTCTGTTTGAAGGAGGAGGGCAGGGCGAGTTTGTTTCGGTAATTGA
GCTTATTGAAGAGGACAAGTCAGTACCAGTAGATGATCGTGAGGAGTTTT
GGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATTA
ATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGG
CGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAAG
ATCGGGGCGAGATACACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCG
GGCCTGGACACAAATTTGTTTTCCCTACAGATTGTAGTGAACCAGGGACT
TACTGTCTGTTTGAAGGAGGAG
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