mRNA_H-paniculata_contig590.13523.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig590.13523.1 vs. uniprot
Match: D7G0L4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0L4_ECTSI) HSP 1 Score: 470 bits (1210), Expect = 1.320e-161 Identity = 248/432 (57.41%), Postives = 302/432 (69.91%), Query Frame = 1
Query: 1 MGASAGTMYSQGGSWGLRFVPVCDLMEQVVHSCLVPAEREFLLACLDETKRRTQSLVGGKKQAAAFHEQGAIEALLEIMDMFKMDEILVRQAVKALVSLCGQDDIILDHFLDLGGRDALGDILETHKLDHYIIEDGTKLKSIIRRYAKGVALRDAASVTKACRYCLSCRPLVDCPALLGPAGNTCSTSEGKLSL-KGVGRRGIY--IDGKGTMLDAFPNED-HLGDPVSDDLHRILRLLDHMERYPKLLDVIEPCVDALIAVGKSGVTEAIVESKCVFKLVKAMKAFPKTRSLQWKARARAXAWGGGDGTGGLLAIIHMSKTDALCFDLGKAGVVQLLIAMWTQWKDDEMRQLILWAMNEISRLETNQLRMSAERAGSVLREAMEPVPVRLAAMGPIVTAEQADHYCIPIKLKRLHRLGRLGNPFSREEEEA 1284
MGASA T+Y+QGGSWGL+FVP DLMEQV H+CLVP+ER+FLLACLDE R SL+ G+KQ AAFHEQGA+EALLE++ MFK+DE+ +RQAV+ L+ LCGQDD +LDHFLDLGGR AL + L H DH++ YC +CRPLVDCP LLGPAGN S+ + L +G G+R +Y G G ++D +ED + DP SDDL RI RL++HME++PK LDV+EPCVDALIAVGKS T+A++ES CVFKLVKAMK F TRSLQWK GLLAIIH +K D +CFDLGKAGV+ LL+AMW QW DDEMRQL+LWA NE LRMS ER G++LREAMEP P RLA G +VTAEQ HYC+P+KLKRL+R +LG+PF++ +EEA
Sbjct: 1 MGASASTLYTQGGSWGLKFVPTYDLMEQV-HTCLVPSERDFLLACLDEMHCRCDSLLHGRKQVAAFHEQGAVEALLEMLGMFKLDEVFLRQAVRTLIPLCGQDDAVLDHFLDLGGRVALDETLGMHTDDHHM-------------------------------YCSACRPLVDCPDLLGPAGNRLSSDSVQRCLQRGAGKRLVYRGSSGNGPIVDDVEDEDENAADPTSDDLVRIRRLVEHMEKFPKTLDVVEPCVDALIAVGKSAATQAVLESTCVFKLVKAMKTFANTRSLQWK---------------GLLAIIHFAKKDEVCFDLGKAGVIPLLVAMWPQWDDDEMRQLLLWAFNE--------LRMSVERVGALLREAMEPAPARLAVTGAMVTAEQVGHYCVPVKLKRLYRERKLGSPFAKGDEEA 377
BLAST of mRNA_H-paniculata_contig590.13523.1 vs. uniprot
Match: A0A835YWK4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWK4_9STRA) HSP 1 Score: 119 bits (297), Expect = 2.600e-25 Identity = 89/302 (29.47%), Postives = 129/302 (42.72%), Query Frame = 1
Query: 661 GDPVSDDLHRILRLLDHMERYPKLLDVIEPCVDALIAVGKSGVTEAIVESKCVFKLVKAMKAFPKTRSLQWKARARAXAWGGGDGTGGLLAIIHMSKTDALCFDLG-------------------------------------------------------KAGVVQLLIAMWTQWK-DDEMRQLILWAMNEISRLETNQLRMSAERAGSVLREAMEPVPV---RLAAMGPIVTAEQADH---------------------------------YCIPIKLKRLHRLGRLGNPFSREEEEAAK 1290
GDPV ++ RI R++ H+++YP + V +PCVDA IA+GK + A+ S C+ LV AM+AF R++ WK GLLA+ H+++ D +C DL KAGVV +L+ +W WK D+E+RQL+L+A+ IS LE NQLR R + LR E PV A+ GP V +Q YCIP+ LKR + LG+PF++E+ +A+
Sbjct: 263 GDPVPGEMRRIERVMRHLKKYPTVAVVADPCVDAFIALGKGSIPAAVAGSGCLPLLVNAMEAFASDRAIVWK---------------GLLAVAHLARNDEMCSDLDMMCNNQLAVDAYNGLWVHPLQALAFASAVHRSEVRDSHVHYRPSAHAQDCCHSARKAGVVPMLMQLWESWKSDEEIRQLVLFALGPISTLEQNQLRCRNCRVAAALRPVFELDPVIAGESASAGPNVMLKQLQEVLRCRLPPPLCPMRAGASAAPPANTPPTPPPHRYCIPLALKRAYLDKALGSPFAKEDGGSAE 549 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig590.13523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig590.13523.1 >prot_H-paniculata_contig590.13523.1 ID=prot_H-paniculata_contig590.13523.1|Name=mRNA_H-paniculata_contig590.13523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=432bp MGASAGTMYSQGGSWGLRFVPVCDLMEQVVHSCLVPAEREFLLACLDETKback to top mRNA from alignment at H-paniculata_contig590:592..7599+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig590.13523.1 ID=mRNA_H-paniculata_contig590.13523.1|Name=mRNA_H-paniculata_contig590.13523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=7008bp|location=Sequence derived from alignment at H-paniculata_contig590:592..7599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig590:592..7599+ >mRNA_H-paniculata_contig590.13523.1 ID=mRNA_H-paniculata_contig590.13523.1|Name=mRNA_H-paniculata_contig590.13523.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2592bp|location=Sequence derived from alignment at H-paniculata_contig590:592..7599+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |