|
|
Homology
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: D8LJN5_ECTSI (Ubiquitin conjugating enzyme n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJN5_ECTSI) HSP 1 Score: 288 bits (736), Expect = 2.500e-98 Identity = 137/146 (93.84%), Postives = 140/146 (95.89%), Query Frame = 1
Query: 1 MMTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
MMTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDG+DIFMTDWNGTILGPN TQHEGRLYTLRIHCGE+YPDRCP VRFVSKLNMGCVDQRSGEV+RNKL VLAQWNRNYGIEQVLVALRNEMA PSNRRL QP EGTEF
Sbjct: 1 MMTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGDDIFMTDWNGTILGPNGTQHEGRLYTLRIHCGEEYPDRCPVVRFVSKLNMGCVDQRSGEVFRNKLPVLAQWNRNYGIEQVLVALRNEMASPSNRRLQQPSEGTEF 146
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: A0A835Z3M3_9STRA (Ubiquitin conjugating enzyme n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3M3_9STRA) HSP 1 Score: 212 bits (540), Expect = 1.880e-68 Identity = 97/146 (66.44%), Postives = 118/146 (80.82%), Query Frame = 1
Query: 1 MMTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
M+ T +GE I++PRNFKLLEELEK EKG GD + SFGLV+ +DIFMTDWNG+ILGP T HE RLY +R+HCGE YPD P VRF+ ++N+ CVDQR+GEV + +L VL+ WNRNYGIEQVL+ LR+EMA +NRRLPQPPEG F
Sbjct: 1 MIMTPSGEQILIPRNFKLLEELEKSEKGHGDMNTSFGLVNQDDIFMTDWNGSILGPPGTIHETRLYEVRLHCGESYPDVAPEVRFLHRINLSCVDQRTGEVIKARLPVLSSWNRNYGIEQVLMGLRHEMASSANRRLPQPPEGARF 146
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: A0A067D9H4_SAPPC (UBC core domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D9H4_SAPPC) HSP 1 Score: 196 bits (498), Expect = 4.680e-62 Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 1
Query: 1 MMTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
MM + EV+++PRNFKLLEELE EKG GD S+S+GL +DIF+T W GTILGP T H+GR+Y+L+IHCGE YP++ P V F S++NM CVDQ +G V ++ VLA WNRN GIEQVLV+LRNEMA P+N+RLPQ PEG+ F
Sbjct: 1 MMAKSGAEVVIIPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTCHDGRIYSLKIHCGEHYPNQPPDVYFTSRINMSCVDQSNGRVDPRRIGVLASWNRNSGIEQVLVSLRNEMASPANKRLPQHPEGSAF 146
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: K3WUW2_GLOUD (UBC core domain-containing protein n=2 Tax=Pythiaceae TaxID=4782 RepID=K3WUW2_GLOUD) HSP 1 Score: 195 bits (495), Expect = 1.300e-61 Identity = 89/145 (61.38%), Postives = 111/145 (76.55%), Query Frame = 1
Query: 4 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
M+ EV++VPRNFKLLEELE EKG GD S+S+GL +DIF+T+W GTILGP T H+GR+Y+LRIHCG+ YP+ P V F S++NM CVD +SG V +L L WNR++GIE VLVA+RNEMA P+NRRLPQPPEG+ F
Sbjct: 1 MSKPGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCGDQYPNIPPEVAFTSRINMSCVDAQSGRVDPRRLPALVNWNRSHGIENVLVAIRNEMASPTNRRLPQPPEGSSF 145
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: A0A024U9Q8_9STRA (UBC core domain-containing protein n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024U9Q8_9STRA) HSP 1 Score: 193 bits (491), Expect = 5.270e-61 Identity = 91/145 (62.76%), Postives = 109/145 (75.17%), Query Frame = 1
Query: 4 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
M A EV++VPRNFKLLEELE EKG GD S+S+GL +DIF+T W GTILGP T H+GR+Y+L+IHCGE+YP+ P V F S++NM CVDQ +G V L VLA W R YGIEQVLVALRNEMA +N+RLPQ PEG+ F
Sbjct: 1 MMKAGAEVVIVPRNFKLLEELESAEKGHGDMSISYGLEQADDIFLTSWIGTILGPAGTTHDGRIYSLKIHCGENYPNAPPEVLFTSRINMSCVDQTNGRVNPRGLGVLASWQRTYGIEQVLVALRNEMASATNKRLPQHPEGSSF 145
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: A0A6G0XR63_9STRA (UBC core domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XR63_9STRA) HSP 1 Score: 191 bits (486), Expect = 3.040e-60 Identity = 88/145 (60.69%), Postives = 111/145 (76.55%), Query Frame = 1
Query: 4 MTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
M A EV++VPRNFKLLEEL+ EKG GD S+S+GL +DIF+TDW GTILGP T H+GR+Y+L+IHCGE+YP+ P V F S++NM CVDQ +G V L +L+ W RN+GIEQVLVALRNEM+ +N+RLPQ PEG+ F
Sbjct: 1 MMKAGAEVVIVPRNFKLLEELDNAEKGHGDMSISYGLEQADDIFLTDWIGTILGPMGTSHDGRIYSLKIHCGENYPNAPPEVYFTSRINMTCVDQTNGRVNPRALGILSNWQRNHGIEQVLVALRNEMSSAANKRLPQHPEGSMF 145
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: A0A7S2EGX9_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EGX9_9STRA) HSP 1 Score: 192 bits (488), Expect = 3.850e-60 Identity = 89/146 (60.96%), Postives = 107/146 (73.29%), Query Frame = 1
Query: 1 MMTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
M T +GE ++VPRNFKLLEELE EKG+GD ++S+GLVD D F+T+WNG ILGP TQH+ R Y LRIHCGE YP P VRFVS++NM CVDQ++G V NKL WNRN GIEQVL+++R EM SNRRL QP +G F
Sbjct: 29 MQRTPSGETVIVPRNFKLLEELEHSEKGLGDMAISYGLVDSGDTFLTNWNGGILGPPGTQHDSRFYELRIHCGERYPAAPPDVRFVSRINMACVDQKTGVVLHNKLPATRNWNRNMGIEQVLLSIRTEMCSDSNRRLRQPADGLTF 174
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: A0A2D4BCZ8_PYTIN (DNA topoisomerase 2 DNA gyrase B n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BCZ8_PYTIN) HSP 1 Score: 190 bits (483), Expect = 9.280e-60 Identity = 88/140 (62.86%), Postives = 106/140 (75.71%), Query Frame = 1
Query: 19 GEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
EV++VPRNFKLLEELE EKG GD S+SFGL +DIF+T+W GTILGP T H+GR+Y+LRIHC + YP P F S++NM CVD ++G V +L VLA WNRN GIE VL+ALR EMA P+NRRLPQPPEG+ F
Sbjct: 8 AEVVIVPRNFKLLEELESAEKGHGDMSISFGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPTMPPEFYFTSRINMSCVDPQNGRVDARRLPVLANWNRNSGIETVLIALRAEMASPTNRRLPQPPEGSTF 147
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: S7QBC6_GLOTA (UBC-like protein n=2 Tax=Gloeophyllales TaxID=452339 RepID=S7QBC6_GLOTA) HSP 1 Score: 188 bits (477), Expect = 5.680e-59 Identity = 84/135 (62.22%), Postives = 109/135 (80.74%), Query Frame = 1
Query: 34 VPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
+PRNF+LLEELEKGEKG+GD S S+GL DG+D+ M+ WNGTI+GP T HE R+Y+L+IHCG+DYP+R P+V+F+SK+N+ V Q G+V +KL VLA WNRN+ IE VLV +R EMA +NR+LPQPPEG+ F
Sbjct: 4 IPRNFRLLEELEKGEKGIGDGSCSYGLEDGDDMLMSSWNGTIIGPGHTVHENRIYSLKIHCGDDYPERPPTVQFISKVNLPFVSQTDGKVDPSKLPVLAHWNRNHSIETVLVEIRKEMASFNNRKLPQPPEGSVF 138
BLAST of mRNA_H-paniculata_contig59.13521.1 vs. uniprot
Match: A0A6A4DSP4_9STRA (UBC core domain-containing protein n=3 Tax=Phytophthora TaxID=4783 RepID=A0A6A4DSP4_9STRA) HSP 1 Score: 188 bits (478), Expect = 1.990e-58 Identity = 86/140 (61.43%), Postives = 105/140 (75.00%), Query Frame = 1
Query: 19 GEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWNGTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGEVYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF 438
EV++VPRNFKLLEELE EKG GD S+S+GL +DIF+T+W GTILGP T H+GR+Y+LRIHC + YP P V F S++NM CVD ++G V +L L W+RN GIE VLVA+R EMA P+NRRLPQPPEGT F
Sbjct: 49 AEVVIVPRNFKLLEELESSEKGHGDMSISYGLEQADDIFLTNWIGTILGPAGTCHDGRIYSLRIHCSDQYPHMPPDVHFTSRINMSCVDPQTGRVDPRRLAALGSWHRNNGIENVLVAIRAEMASPTNRRLPQPPEGTNF 188
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 288.9 |
| Seed ortholog evalue | 1.3e-75 |
| Seed eggNOG ortholog | 2880.D8LJN5 |
| Preferred name | UBE2V2 |
| KEGG ko | ko:K03164,ko:K10704,ko:K20656 |
| KEGG Pathway | ko01524,ko04624,map01524,map04624 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000151,GO:0000165,GO:0000187,GO:0000209,GO:0000726,GO:0000729,GO:0001932,GO:0001934,GO:0002218,GO:0002221,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002753,GO:0002757,GO:0002758,GO:0002764,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006303,GO:0006355,GO:0006464,GO:0006468,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006952,GO:0006974,GO:0007154,GO:0007165,GO:0007166,GO:0007254,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0008283,GO:0009605,GO:0009607,GO:0009617,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009967,GO:0009987,GO:0010033,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010604,GO:0010628,GO:0010646,GO:0010647,GO:0010720,GO:0010941,GO:0010975,GO:0010976,GO:0010992,GO:0010994,GO:0016043,GO:0016310,GO:0016567,GO:0016740,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0022008,GO:0022607,GO:0023014,GO:0023051,GO:0023052,GO:0023056,GO:0030154,GO:0030162,GO:0030522,GO:0031098,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031371,GO:0031372,GO:0031399,GO:0031401,GO:0031624,GO:0031625,GO:0031974,GO:0031981,GO:0032147,GO:0032268,GO:0032270,GO:0032434,GO:0032436,GO:0032446,GO:0032501,GO:0032502,GO:0032879,GO:0032880,GO:0032991,GO:0033554,GO:0033674,GO:0034097,GO:0034622,GO:0034641,GO:0035370,GO:0035556,GO:0035872,GO:0036211,GO:0040012,GO:0042176,GO:0042221,GO:0042275,GO:0042325,GO:0042327,GO:0042592,GO:0042742,GO:0042981,GO:0042995,GO:0043005,GO:0043066,GO:0043067,GO:0043069,GO:0043085,GO:0043122,GO:0043123,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043405,GO:0043406,GO:0043408,GO:0043410,GO:0043412,GO:0043523,GO:0043524,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044390,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045088,GO:0045089,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045732,GO:0045739,GO:0045859,GO:0045860,GO:0045862,GO:0045893,GO:0045935,GO:0045937,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050776,GO:0050778,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050795,GO:0050803,GO:0050807,GO:0050896,GO:0051052,GO:0051054,GO:0051090,GO:0051091,GO:0051092,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051258,GO:0051338,GO:0051347,GO:0051403,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0060255,GO:0060284,GO:0060341,GO:0060548,GO:0061057,GO:0061136,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070423,GO:0070498,GO:0070534,GO:0070555,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071347,GO:0071704,GO:0071840,GO:0071900,GO:0071902,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090325,GO:0097458,GO:0098542,GO:0120025,GO:0120035,GO:0140096,GO:1901214,GO:1901215,GO:1901360,GO:1901564,GO:1901800,GO:1902494,GO:1902531,GO:1902533,GO:1902680,GO:1903050,GO:1903052,GO:1903362,GO:1903364,GO:1903506,GO:1903508,GO:1903827,GO:1990234,GO:2000008,GO:2000026,GO:2000058,GO:2000060,GO:2000112,GO:2001020,GO:2001022,GO:2001141 |
| EggNOG free text desc. | protein K63-linked ubiquitination |
| EggNOG OGs | KOG0896@1,KOG0896@2759 |
| Ec32 ortholog description | ubiquitin conjugating enzyme |
| Ec32 ortholog | Ec-17_002730.1 |
| EC | 5.99.1.3 |
| COG Functional cat. | O |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000,ko03032,ko03036,ko03400,ko04131 |
| Exons | 4 |
| Model size | 441 |
| Cds size | 441 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig59.13521.1 >prot_H-paniculata_contig59.13521.1 ID=prot_H-paniculata_contig59.13521.1|Name=mRNA_H-paniculata_contig59.13521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=147bp
MMTTATGEVIMVPRNFKLLEELEKGEKGVGDHSVSFGLVDGEDIFMTDWN
GTILGPNATQHEGRLYTLRIHCGEDYPDRCPSVRFVSKLNMGCVDQRSGE
VYRNKLQVLAQWNRNYGIEQVLVALRNEMAGPSNRRLPQPPEGTEF* back to topmRNA from alignment at H-paniculata_contig59:10352..20703- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig59.13521.1 ID=mRNA_H-paniculata_contig59.13521.1|Name=mRNA_H-paniculata_contig59.13521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=10352bp|location=Sequence derived from alignment at H-paniculata_contig59:10352..20703- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACCACAGCTACTGGAGAGGTTATTATGGGTGAGTTCTTGAGCCA
GCAAAATGGTGCTCTCGATGTTCCATAGTCGGCGGATTTGTATGGTATCG
TCTACATTCTCGATGTTTCTGTAAAGAACAGGTGTCGAGGTCTCTACTCA
AGCACTACTGCCCAGTGGGCAGGCGTATGTTGGTCGCGTAATATCGGAGC
CTTTTCAACGGCTTGCTGTGGCTAGTTTCTGAGTTGCGAGAAGATTAAGA
AAGCAAGGCGCTGTGGGTGCGCCCGTAATTTTGCAGTGGGCGGAGTGGAC
AATAGAAATACTAATATTTGGTACATGAGGAGAACCCCTTTCTGTACTGC
GAGATGAGTAGCACAAATGGGTGCTTGAGACTACCCAGTTAATTCGACTG
CCCATCATGCAGTTTGGACTGCTGCATGAAGCCGTGAACCATACATCGTG
ATCGTTGCGTTCGCACGGACACTGGCCCTTTGCTTTCGAAAACAAGGGAT
TCATCCTTTGTCTGCTGTACTTATTTTTGTCCAGATTGTGTCCTAGTGCG
GTATTTGATGATGTGGTCACATGGGTTCCTTCATCAATATGTTCCGGTCG
CGATACCTGAACATGGTGTTATCTCGGCCAAGAGGCTCCTCTGTTACATG
CTGGACACCGTTGTTCTGACTCGCTGCACTAGTAGCATTCTTGTGGCGTC
GTACTATACAAACAGTAGTGCGTGGTGCTCTACTGCTTTATACGGCTGCA
CTCGATCGTATTTGCTCTCACCCATCAAGGCTAGGCCCTTTTTTTCGGAT
AAAATTGTTGACATTTCGGCGAAGGTGCATACTCTCGCAGAATCAGTAAA
GCAAATTTCTCTGCGCTATTGGTGAAAGATGGCTCTCTCGTGTGTATGTG
CAATGTGCCATGTATCCGGGAGCCGTCGTCGGAACATCGGCACGTGATTT
AACTTGATCATAGAGAGGGCATCAAATTGTTCTTCTGTAACGCTATGAGA
AGATCAGTAAGTCGCGTATATGGATGCACTACTGATTATATAATACTCCA
AACACTTTCTACTCTACTCTTTATGGTCGACGCACTAATTTCACGTCAGC
TCATCAATGAGTACTGGTACCTCACTGTACTCAATTGGGCTGATCACTCC
ACCGCCAGGCACCACATCTTCGTCTTCATACTAACTCGTGTTCGTTCAAA
AGTCACCGCGCAATCACCGCGTATGCCGTCGGGATATCTACCCCGTTGAC
GGGCACTAATTTACCACACTGTAGGCTCAAAACCTGGCGTTTGCAAGGCA
GGCTGTACTCTACTGTACTGACCAGCCCAGCGGGCTGGCATCTCTCATCT
CTTGCTAATGAGACACTAAAGAAAACAGTCCCAATGTCCAAATTGCAAAT
TGTTGCCGCCACCCTGCTATTTGACCGAAAATAATCTCCCCCAGTGCATC
TTGATGTTGATGCCCATTCATGTCCAAGTTCTACCTACATTCTAGCTGCA
CCACACCATATCACGTGCCTACATGCGGTTAGGGGGGAAGCATACTCGGT
GGGTCTAATAGTATTTTTTTCGATCTCAGCTCGTCGCCATTATTAATCGT
TTACTCTTAACCCTTTCGTCATTTTGCCCCCATATATATTTTTTCAAAAA
CCAAAAAATACATCTCGCAACAATGAACTGCCCAGCGCCGCTGCAACGGT
TGTGGCCACAACCATGCCAAGTACCCGTCTGTTTTGTATGTATTGTCTAT
GCTGGAATTCCTTGAACATCAGTGGGCTCCCTTCGTGATGCATGCGTAAT
CCAATCACGTCACAAGCACGTTGTTTTTCCCTGTTGTTGAGAGTGGCGAT
TAGACGGGAATTAGATGGCGTTCGGGGGGGCGGAAGGGTCAAGGCGGAGG
AGGGCGACAATTCTTCAATCAAGACCGCTTCGTAGAGCGGGGTGCAAAAA
TAGCGCGAATCAAAACCATGTCAATTGTGTGTGTGTGTGCGTGTGTGCAC
CCCTAAAGGTGCACAGTCGACGAGTTGAAATGAAAATTCTATTGAAGGGG
GGGGGCAGGCAACAAATGCAAATTTTGAAAAACAAATGCCCGATCTCGTT
CTCAAAGGGGCTTCTTCGTTAAGCAATGCGGCTTCAATACCCACCCTTCT
CTACCATAGGATGACCCGAGGGTCAATGTCCGAAATAAGGTACGCCTTAG
TGTCATATCCGCGATTTGACGGGTTATGTTGTGGCTTCTCTGTTGCTCGT
CCTCGGGAAAACGATAGGAAGACGCCTTTGTATCAACACTGAAATAAAAT
ACTTGACCCCACAGTTGGCAACCCGCCACATACGATTCGTCAGAGACCTG
TTTTCCACTTGCGTTGAACACGACGGTTGACACTTGGTTTGTGTATTGGT
TTACGCCTAGTGTGTCCTGACGTGAGCAGGACCAACGTAGGCACGGTGTG
CGTTGTGCCTCGGGAAAAACCCTAGTCCTAAACCCCGACCTCCTAGGCAT
GGTGTGCGTTGGCAGAGCTCACGGCTCAGACTTGAGCCAACCTTAGTGCC
GGGCACGCGCCAAGGCGGCTCACAACCGTGTCATCATGTCTCTTGCATTT
TGTGTCAATATGCTACGGTGGTAATTCAACCATTGTATTCGAACAAATGG
TTAAACAACTACTGACGCGTCCATACTTTTCGGTCTGCCAGGACGAAAAA
GAGCGTTCTTGGCGGTACACACGGTTTCTCGGATACGTGCTGCCTGCTCT
ACAGACGTACAGTCGACGTACACACAACAGTAGCTTGTACTGTGGCAACA
GTCAATAGGCAGCCTCGTAGCCAGTCCCTGGTGGACTCTCTGACTGTTGA
CGGTTGCATCTCGACCATGATTGCGCGTGATATCATGAGTTATCAGGAGG
CATGTAAAGTACATAAATGTGGGCGACTACCCCCAAAATTAGCACGTTTT
CCCGTTACCCACCCGCGAGATTTCAGTCGACATGTGACGCGTGGAAATAA
TATTTTCATGCTTTCCATGGAGTTTTATCTGGTCATTGCCCAATGACAAA
AATCGACATGAGATTACCGAGCTGTGGTTTGCTGCCATACACGCGTACGG
CGGCGAGCGTGGTTCTGGCGACACCGGTTTTCGAAAACCATTCTGCTGAG
GGCAAGAGGGGTAAATGTTTTTGGTGTCAAAATTGACCTAGAGTGAGATT
TATAGTTGAGGTTAGTAAAGGGCGTTGGGGGGACAGTATATGAGATTACC
TATGCCGTATAAGAGTTTGACATTAGCGATTTGGAAAAAGTATGATTCAG
CACCCAGGCTTGTGCGCGTAAGATCGTCACTAACTGTCGCTTCAAATCGT
GTATCATGAGTAGCCCACGCACGTGGGACAGGACTGCGCCACGGCGCTCC
GTCCCATCGAAAAAGTGTTGGATGGTTCCATAATTTTCCCGATGTTTTGG
TGATGTTTTTCTCGTCCATCTATTTCCCTCATCTTTGTTTTTGGTGTTTC
CAATATTTGGAAGCATGTGTTCGCGGATCGAAGTTTTTTTTTCTTTGTTA
TTTGCCTCTGGTGTCCTGGGGAGTGATACGTACCGTATCGAGAGAATATA
TGGCCGGGCTTCGTTCAACCTTCGTTTGCAATGACACTGGTGCATTGCTC
TCCATATTTATCGTCGCTTGGCGGAATGTTGTAATTCTTCATGGCAAGGA
TCGATTTAGAAGGTGTCTTGATTGTTTTTTTTCTCGTCATTGCCCGATGA
CAAAAATCGACATGAGATTACCGAGCTGTGCTTGATTGCTGTACTTGCGT
ACGGCGACGAGCGTAGTGCTGGCGAGAACGGTTTTCGAGAACCATTCTGC
TGAGGGCAAAGAAAAGAATATTTCACGCAGCGCCTGTGTACGTCAAGTTC
TCTTCAAGCTGTTGCTGCAGCTTCCGAATACTCTGGTAAATCAAGACACA
CAAAGCAAGAGTTCGCCACCGCCTCCTGTCCCACCGCAGCGCCATTCGGT
GCCCTAATTTTTTACGACTTTTTTTCCATGTTTTTTTCTGGTCATCATCT
TCTCTCCCTTCGTTTCCGGGGTTTGCAATATTCGGAGGCAGGCTTTCGCT
GGTCGGAAAGAATGTAGTTTACCCGCAGTAGTTTACCCGCAGTGTCTGGG
GGAGTGGCCAAAAGGACACGTACTGGGGCTTCGTTTAGCCTTCGTTTGTA
ATGACACTGGTGCATCACTTGCCATATTTATCATCGCTTGGCGGAGTGTT
GTAGTTCTTCATGGCAAGGGATCGATTTAGAAGGATTCTTGATTGTTTTT
TTTTCTCGTCACTGCCCAATGACAAAAATCGACATGAGATTACCGAGCTG
TGGCTTGCTGCCATACACGCGTACGGCGGCGAGCGTGGTGCTGGCGAGAA
CGGTTTTCGAAAACCATTCTGCTGAGGGCAAATAGTAGTGTATTAGCATG
GATGCGTATGTGCGTCTGGTTACCTACAAGCTGTTCCTGACTGTAGCTTC
CGAAAAGTCTGGTAAAACAAGACACGCGAAACAAGAGCTCGTCACCGCTC
CTCGTCCCACAGTAAGGGTATTTATTTCATGATTCAATTTTAATTTGATT
TCTTGGCTGTTTTTTCCTGGTCATCTTTTTCCTCCTTGGATTCCGGGTTT
TGCAATATCTGGAGGCAGGCTTTTTAGCATCGAAGAGGTGTTGTTTGTTG
CCCCCGGTGTGCAGGGGAGTGGTCTGGACAGTACCAGGAGAGCATATGCC
CGGGCTTCGTTCAACACTCATTTACAATGTTGTCGGTGCATTGTTCCGGG
TTCTTAGGAGAGGAGTGATTCAAGTGGTGCCATTTGATTTTTTTTCTCGT
CATTGCCCAGTGACAGAAATCGACATGAGATTACCGAGCTTTGCTTTGCT
GCTGTAGTCGCATACGGCGATGAGCGTAGTGCTGGCGGCAACGGTTTTCG
AGAACCATTCTGCTGAGGGCAAAGAGGAGTATATCAGCAGGCAGGCGTGT
GCGTATTAAAATTGCCTCCAAGCTGTTGGTGACTGTAGGTAACTGACGCG
AAACGGGAACTCGTCATCGCTCCCTTTCCGACAGCAATTGACATACTGTA
TCCAGTGTAGAGTGCATTTAGGGGCGAGAGACGGACATCATATATATATA
TATTTATTTTTGTAGATAAATGATCAGGAACTCCAAATGGCGTAATTTTT
TCAATTTTCACAGCCGGGGACTATGATCATGGATCGCGGGAGCATGGTGT
TCCCTTAAATGCAATTGGTAACTGGAAACCCTATGCCGGCGTGTGACTGC
ACATCTCTGTGTGGTTAACTTACCAAGTCCAAGTTATAAGCAATCGTCTA
GACGGAAATGTTTTTTGTAGTTTTTGAGTCTCCCTTGACGATCATAACGT
GTTTTCGGGAGAACGGTTATTGAAAAAAAAGAAAAAAAAGAGACATGCGT
AGATCGGCCTGAAGGTTGGGTTAATTTACATTCTACACGTTGATCATTTC
ACTACGTGTTTTCAGCTGCTGTAGGAGAAGCCAGAAATCACGTAGATTGG
TATATCTACATCCGCACGGATGGTGCACGATGCTGAGGCATCGTAATACA
AAAACAGCTTCGGCTCGTGTGTTATTTTATAGTCCATGATGATTATTTTG
TCTGTGAACGATGTTTTCTCGAACCACAGTGCCACGCAACTTCAAGCTGT
TGGAGGAACTGGAGAAGGGTGAAAAAGGTGTTGGAGACCACAGCGTCAGC
TTCGGTCTCGTGGACGGGGAAGACATCTTCATGACGGACTGGAACGGGAC
TATTCTTGGCCCGAACGCGGTGAGCTTGTCACCGTTCATGTGCGCTGGTG
ATGGGGGTGCGGGAAGGGCAAATTCACTCTGAGCGATTTATTTTTATTTT
TTTAAGTCTGTTATGATATGTTGATTGGGGGACGTGACAGTCATTGTCTA
ATGTGACGGTTCCATCCCCAATCCCCGGGTTTATGTAAGGTAGCCTCAGT
TTGAGCTGGGAGCAGGACGCACGGACCGGACAGTGTGACCATCCCACCAA
CTGACAGACTTGTATCGACACAGGGCTTTTTCCTGATGTACAGCAACATA
TAGCTAATACAAGAGACCAGGCCATTGCCAAGGACTACCTGTATCACCCC
AGCCGCACCGGTCTGAGAGTATTGTGCAGCATAGTCAGTAACAGGAAACA
ATAACCTCCGTGTGTGAGATACTCCGCAATACGCACAGCAGTCATCATCA
CAAGTCAAGCACTTTTTTTTTGCCTTCATCACAAGGAAGGCATCGAACGA
CAGGTGTACCGAAGTTAGCTATATCAACCATTTAGTCATTTTTAGATAAC
GACGAGCAAACGAAAACTACCGATCCAACCGTTGGCCATTGATTAGTGAG
AATTATGACAAAGTTAGTGGGAGCGATAGGGGTGGTCCACGGTTTAGAAC
CTATCCTCGAGTTGTTGTGTGTTTTTTTTTCCAGACTCGACCGGATTTTT
GAAAATGAGCCCATCAGAAAGGCACACACATGCAAGAGCCCGCAGCAGTT
GATCGAACTGAAATGAGGCGAGTTGATCCACAGAGTACACAAAAGGCATG
GCTTAGCACCGTGCACTATCTGAGCTACAGCCTATTGCCCTCTGGGTCAC
TCCCCCAGACCCTGTTGGCAATACCGTGTCGCCGGCGAGTAAACCCGTGC
CGGTGGTAAGCGGTGCCGCAATACTCAAGTATGGAAGCATCGGTAAAGGT
TTTTGCCTCAGCTTTCCGGGTGTTGAAAAAAAAAGAAAAAAAGAGCGCTG
CCGCAGCTCCTACACCTCGGAGAACACCAAGCCATCTCTCTCCACGGCGT
GTTTCAATTTCCGCGTAGCTTCATGCTTTGAAGGGCTTGTGCCAGTTCTC
GTTTTGACCAATTTGCTCGGTAGCTGTTTACTTTTTCCACGTGGCCTGTT
GTCTTGGTATTTTCCACGGGTGCACATATTCCCTCATCGCTCAGCCTTAC
AGCTCTACTAAAACACACGGAAAATGGTGGAGCAGGTCTTGAGCGTTCTG
GTACGCTGCCTGTACTGTCTGTTGTACTGCTATGCAACGGCCACGAGGTG
GCTTCTATCTCGCCAGCGACTTTGCCCGCCTGAAGAATTGCGCAGTACCT
TATCCTCTTTTTGGTGAAACGTCAGTAATTTTTCTGAATCTTGTCGAGAT
GCTGATCAATCGGGGTGTATGTCTTTATATTTAAACTTGAGTATATAAAC
GCGCAGTAGTAAAGTCATGCTGAGTTATGTTTTTCGTTGTTTTGTACTTG
AAATTTGTATAGAAAAAATTGGTCGCATGGCAAGCGATGGGATCCTGGGT
AATGGAGTTCTCGTCCACAGCTGTGAGTAATCGTGCGGGGTTGGTTGTGC
TGTGTTTGCTCCTGGGTAATGGAGTTCTCGTCCGCGGTTGTTGTGCTGTG
TTTGCTGTGGTCGGTAGTAGTGAATGTGCAGTGACAATAATATCCTCCAA
ATATCACTATACAAAGTATCTGATGTTTAGCCCAAAATCATCCAAGATTG
GAAAGCGAGATAACATCGCTTTTTTATTACTGAAGCTGGCGTTCTTGCGA
GCCTGCAAAGTGAACGTTCTCTCATCGGATACGTGATGATTGTTACATGT
TCGCGCCAGGTTTGAGGAACAGGCTGTAAATCTACGAAATGCGATGGAAT
TAACCACGACGTCAGTTTTTTCCGGAGATTCGGTGATTTCCATTGTTGTA
TGTCTTCCACATTTCCCGGGCCGTGGTTCATGAACTGCTACACATCTCAC
TTGTTGGAATATTGTGGATGAGGTCAAGGACACTTGTGCCCGACTCTTGA
AATGGTGTATGATTCACAGGGAGATCAACTATTACACATTTTTTCAAGTT
TTATGCGTGAACTAGCTGGTAAGCAATAGCAAAGCTCGAGTCACGAGAGG
ATGAAGGTCCTATTTCACTTTCGTAGGGGGGCTCACACATCGGGAATCTG
TTTTCTGGGGATCTGGATTTTGATGGGAGATTTTGCATACAAAGAGAGTT
TCTTTTAACGTCAAAAAAAAAAAAAAACTTGGCGATTGTGCAGGTGTTGA
TTTATTTTTTTCTGTCCTGTCTGAGAAAAGCATTGATTGATTCGTCGGTG
AAATTCCTCCCTTCCGAAAAGAGAGACAAGTGTTGATTCACGATTATCTT
GCTTACCGGCCGGGTTGATCACAATAATATAAAACCCTCAGTTGCTTACT
TTGCTTACGGAGTAAAAGCCTTGGAACATGACCAGATTTGGAGCGGTGAT
TCGCGTTTTTTTTTTGTATTTATGAATACACCAGTCCGAACCGACTGTGC
AGACAGGCGAAAAGCGTTGGGAGAATCGAAGGGATTCGGTTGAACGGATG
TGATGGGTCGTGTGGCTGTGGGTGAACTTTGATTCATCTTTTCTTGTGGG
TGTAAGCTTGCGATATATTGACATGCGAAAAGATAGCTGGGGAAAACGCC
TCCCGTGTTTTGGTCGTGTTCCATTTGGTCCTCCTTTCCGTGACTGTTCA
TCTAACTTGTGTTGAAATCTTCAGCCGTTGGGAACTTGATAACTCCCCAA
GCCAGCTAGTAGCGTGAAGTGCTTCTTTTTTTTTCCGGCGGTTGCAATGA
AAACTAGTGTCTGCCCGTTCTTGCTGCTCTACATACTAAATCCCATGATG
AAAAGCTCCTGAACGATTTACAGCCAATAAAAATAAAAAATAAAAAAGTA
GTGAGTACTCACTGTGGCGATATTTCCTATCATTCACGACTGATTGGATG
GAATTTGTTTTGGCCGCTTCGTAATGTTCAGCCTCTCACGGATTAAATTT
TTTTGTGTGTGCTTTGTGGTCTTTTGCGGTTTCTTTCAGACGCAACATGA
GGGGCGGCTTTACACGTTGAGGATACACTGTGGAGAAGACTATCCAGACC
GTTGCCCATCCGTGCGCTTCGTGAGCAAGCTGAACATGGGTTGCGTGGAC
CAGAGGAGCGGGGAAGTGTACAGGAACAAGCTGCAGGTCCTGGCGCAATG
GAACAGGAATTACGGCATCGAGCAGGTTCGTTTTTTTATTCTTCCGGACG
GTAAACTAATAACTGTTGGGAGACGTGGGGTCAGCAGGATCTATATTAAA
CTCCCCCCGAGCCCTGTTTGTGATGGAGTGAATGAAATATTTGGAAGAAA
GCATGTACTAAGGCCGAGTTTCGATGCAGATTCCGAATCTGATAGAATTT
TACTGAAAAAAAACGGACTTTTGGGGGGGGTAACGCGTCGATTTTTGTTT
TTTTATGGTCCCTTGTGACAGACAGTTTTGTTGATTTCCGTTCATGTTGG
GGAATACGTGGCACGCTTCGAAGAGACTGGAGTGCCGGGGAGTTTTAATA
ATTCGGGGTGACCGGTTTGGGAGCAGGTCGGTTCCTTGTTTGGTCATGAT
TATCAACGTAATGGACTAATGAATTCGTTTTGTGTTGAAAACGTTTAGTG
GCGAGTGGGTATATAGATCGGTAGAGGGTAGACTGCGAGCAATCGAAAGA
CAGTCAATGTGTTGGTTGGGGGCTTTTGTTGTGTTTTGTTTCACGTGCCC
ACTGTTTCTGCGTGTCTTTTTTACCCTCCAACCTGCGGCCCTTTGCTCTG
TCCCTCTCGTCCGCATTTGGTGGGTTCTTGGGACGGATCAGTCGTCAGGT
AACATTATTCAAATTAAGCGAGCATACGCACGTCCAATTTCGGTCAATAG
TGGCATGTTTTCTGTACCTTTGTTGAGTCTCACCCCACTTTAGACGGTGC
TATTCTGTCGGTCACGTGATTCTCTTGGCCCACGAGACGCTGTAGTTCGT
TCATGCCCGTACTGTAGCCCTTTCATAGTTCATGAGATTCGAATCTGTTG
TAGCTGCGCATAGGGTGTTGAATATTTTATCGTTGCCAGGGAAGCCTGGG
GTTGAGCTGTCCTCACTCTTGCGTGAATCCAAGAAAAACGAAATCGTAGA
CATGGGAATAGACGACCCCATTTTGAATGTGAGATAAGCGTCAACCAACT
GTCCGGGAGGTGATCAGGCATCCTGCAGACGTTATCATTTTTTATAACTG
GTCATTGCGAGGTCTTGTTCCTAGAGGGTTCAAGTCCACCCCTTGTTTAT
ATATTTTTGCTGATGGATGTACACAAGTGAGATTTTGAGGTCAGCTGCTT
AACCTGAAGTTTGGGTACAATAGAGTATATGATATGAGGTATCACCCCCT
CTTCGCTCGCAATATGAACAGGTGCTAGTGGCCTTGAGGAATGAAATGGC
GGGGCCCTCGAACCGCCGACTTCCTCAACCGCCGGAGGGAACGGAATTCT
AG back to topCoding sequence (CDS) from alignment at H-paniculata_contig59:10352..20703- >mRNA_H-paniculata_contig59.13521.1 ID=mRNA_H-paniculata_contig59.13521.1|Name=mRNA_H-paniculata_contig59.13521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at H-paniculata_contig59:10352..20703- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGACCACAGCTACTGGAGAGGTTATTATGGATGATGACCACAGCTA
CTGGAGAGGTTATTATGGTGCCACGCAACTTCAAGCTGTTGGAGGAACTG
GAGAAGGGTGAAAAAGGTGTTGGAGACCACAGCGTCAGCTTCGGTCTCGT
GGACGGGGAAGACATCTTCATGACGGACTGGAACGGGACTATTCTTGGCC
CGAACGCGTGCCACGCAACTTCAAGCTGTTGGAGGAACTGGAGAAGGGTG
AAAAAGGTGTTGGAGACCACAGCGTCAGCTTCGGTCTCGTGGACGGGGAA
GACATCTTCATGACGGACTGGAACGGGACTATTCTTGGCCCGAACGCGAC
GCAACATGAGGGGCGGCTTTACACGTTGAGGATACACTGTGGAGAAGACT
ATCCAGACCGTTGCCCATCCGTGCGCTTCGTGAGCAAGCTGAACATGGGT
TGCGTGGACCAGAGGAGCGGGGAAGTGTACAGGAACAAGCTGCAGGTCCT
GGCGCAATGGAACAGGAATTACGGCATCGAGCAGACGCAACATGAGGGGC
GGCTTTACACGTTGAGGATACACTGTGGAGAAGACTATCCAGACCGTTGC
CCATCCGTGCGCTTCGTGAGCAAGCTGAACATGGGTTGCGTGGACCAGAG
GAGCGGGGAAGTGTACAGGAACAAGCTGCAGGTCCTGGCGCAATGGAACA
GGAATTACGGCATCGAGCAGGTGCTAGTGGCCTTGAGGAATGAAATGGCG
GGGCCCTCGAACCGCCGACTTCCTCAACCGCCGGAGGGAACGGAATTCTA
GGTGCTAGTGGCCTTGAGGAATGAAATGGCGGGGCCCTCGAACCGCCGAC
TTCCTCAACCGCCGGAGGGAACGGAATTCTAG back to top
|