mRNA_H-paniculata_contig58949.13516.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58949.13516.1
Unique NamemRNA_H-paniculata_contig58949.13516.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 1.890e-9
Identity = 36/82 (43.90%), Postives = 47/82 (57.32%), Query Frame = 1 
Query:   13 VADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  RG      L RVAHVP LD NL+SL  + + G
Sbjct:  396 VADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRGGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 476
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5KGB7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB7_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 6.420e-9
Identity = 39/96 (40.62%), Postives = 52/96 (54.17%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQGL-TVCLKEEVQQL 294
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G  T  L   V +L
Sbjct:  326 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNRHVLEL 420
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.470e-9
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  234 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 315
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 8.950e-9
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  385 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 466
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5JEW4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW4_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.010e-9
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  187 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 268
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5J894_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J894_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.060e-9
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  382 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 463
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.060e-9
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  369 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 450
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.070e-9
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  382 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 463
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 61.2 bits (147), Expect = 9.080e-9
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GAT HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  525 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 606
[Close]
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Match: A0A6H5JNW8_9PHAE (CCHC-type domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNW8_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 4.210e-8
Identity = 34/83 (40.96%), Postives = 46/83 (55.42%), Query Frame = 1 
Query:   10 WVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLVWMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQG 258
            +VAD+GA  HM  +++    YE      V +A GET P+ GYG + V +  R       L RVAHVP LD NL+SL  + + G
Sbjct:  250 YVADTGAATHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 331
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58949.13516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXF7_9PHAE1.890e-943.90Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KGB7_9PHAE6.420e-940.63CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5L142_9PHAE8.470e-942.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KX24_9PHAE8.950e-942.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEW4_9PHAE9.010e-942.17CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J894_9PHAE9.060e-942.17Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE9.060e-942.17Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE9.070e-942.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE9.080e-942.17Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JNW8_9PHAE4.210e-840.96CCHC-type domain-containing protein (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58949contigH-paniculata_contig58949:478..777 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue4.3e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.686694-CDS-H-paniculata_contig58949:477..7771622930643.686694-CDS-H-paniculata_contig58949:477..777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58949 478..777 +
1691481386.310608-CDS-H-paniculata_contig58949:477..7771691481386.310608-CDS-H-paniculata_contig58949:477..777Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58949 478..777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58949.13516.1prot_H-paniculata_contig58949.13516.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58949 478..777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58949.13516.1

>prot_H-paniculata_contig58949.13516.1 ID=prot_H-paniculata_contig58949.13516.1|Name=mRNA_H-paniculata_contig58949.13516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
EEFWVADSGATAHMTPSNELTFDYETYSNLFVTMANGETLPVEGYGKMLV
WMKDRGEIYKFSLSRVAHVPGLDTNLLSLQIVVNQGLTVCLKEEVQQLHY
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mRNA from alignment at H-paniculata_contig58949:478..777+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58949.13516.1 ID=mRNA_H-paniculata_contig58949.13516.1|Name=mRNA_H-paniculata_contig58949.13516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig58949:478..777+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTC
TAACGAATTAACGTTTGATTACGAAACCTACAGTAATTTGTTTGTGACGA
TGGCTAACGGCGAAACGCTTCCGGTTGAGGGATATGGTAAGATGTTGGTA
TGGATGAAGGATCGGGGCGAGATATACAAATTCAGCTTGAGTCGTGTAGC
GCATGTTCCGGGCCTGGACACAAATTTGTTGTCCCTACAGATTGTAGTGA
ACCAGGGACTTACTGTCTGTTTGAAGGAGGAGGTGCAGCAATTGCACTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig58949:478..777+

>mRNA_H-paniculata_contig58949.13516.1 ID=mRNA_H-paniculata_contig58949.13516.1|Name=mRNA_H-paniculata_contig58949.13516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig58949:478..777+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTC
TAACGAATTAACGTTTGATTACGAAACCTACAGTAATTTGTTTGTGACGA
TGGCTAACGGCGAAACGCTTCCGGTTGAGGGATATGGTAAGATGTTGGTA
TGGATGAAGGATCGGGGCGAGATATACAAATTCAGCTTGAGTCGTGTAGC
GCATGTTCCGGGCCTGGACACAAATTTGTTGTCCCTACAGATTGTAGTGA
ACCAGGGACTTACTGTCTGTTTGAAGGAGGAGGTGCAGCAATTGCACTAC
GAGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTC
TAACGAATTAACGTTTGATTACGAAACCTACAGTAATTTGTTTGTGACGA
TGGCTAACGGCGAAACGCTTCCGGTTGAGGGATATGGTAAGATGTTGGTA
TGGATGAAGGATCGGGGCGAGATATACAAATTCAGCTTGAGTCGTGTAGC
GCATGTTCCGGGCCTGGACACAAATTTGTTGTCCCTACAGATTGTAGTGA
ACCAGGGACTTACTGTCTGTTTGAAGGAGGAGGTGCAGCAATTGCACTAC
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