mRNA_H-paniculata_contig5890.13513.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5890.13513.1
Unique NamemRNA_H-paniculata_contig5890.13513.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 4.970e-20
Identity = 46/70 (65.71%), Postives = 50/70 (71.43%), Query Frame = 1
Query:   10 VVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLV 219
            VV QQDGA+PHTGK  P  LN  G   GW V LVTQPA SPDLN+NDLG FASLK RVW     +ID+LV
Sbjct:  295 VVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A081AGH7_PHYPR (Uncharacterized protein n=3 Tax=Phytophthora parasitica TaxID=4792 RepID=A0A081AGH7_PHYPR)

HSP 1 Score: 71.2 bits (173), Expect = 2.340e-13
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GEEVVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            G+ V  Q D A PH   D P  +     DGGW++++  QPA SPD NVNDLG+FAS++S   +++  TI+DLV  ++ A
Sbjct:   32 GKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEA 109          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: W2PEH8_PHYPN (Uncharacterized protein n=1 Tax=Phytophthora parasitica (strain INRA-310) TaxID=761204 RepID=W2PEH8_PHYPN)

HSP 1 Score: 71.2 bits (173), Expect = 9.080e-13
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GEEVVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            G+ V  Q D A PH   D P  +     DGGW++++  QPA SPD NVNDLG+FAS++S   +++  TI+DLV  ++ A
Sbjct:  133 GKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVNNVEEA 210          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: V9F261_PHYPR (DDE_3 domain-containing protein n=1 Tax=Phytophthora parasitica P1569 TaxID=1317065 RepID=V9F261_PHYPR)

HSP 1 Score: 71.2 bits (173), Expect = 1.610e-12
Identity = 35/79 (44.30%), Postives = 50/79 (63.29%), Query Frame = 1
Query:    1 GEEVVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            G+ V  Q D A PH   D P  +     DGGW++++  QPA SPD NVNDLG+FAS++S   +++  TI+DLV  ++ A
Sbjct:   13 GKRVFLQHDNAKPHVAADDPEVVAACS-DGGWDMSIKPQPANSPDFNVNDLGFFASIQSLQHKKKARTIEDLVSNVEEA 90          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.800e-11
Identity = 35/79 (44.30%), Postives = 47/79 (59.49%), Query Frame = 1
Query:    1 GEEVVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            G  +  QQD A PH   D P  L   GR  GWN+ L+ QPA SPD NV DLG+F +++S   +    TIDDL++ ++ A
Sbjct:  287 GATIYVQQDNAKPHVAVDDPEVL-AAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQSLQHQTTARTIDDLIKCVEDA 364          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A6G0WL62_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WL62_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 6.930e-11
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   10 VVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            +  QQD A PH   D P  L   G   GW + L +QPA+SPD NV DLG+F S+++   RE    IDDLV  + RA
Sbjct:   83 IYIQQDNARPHDEVDGPAVLM-AGSSEGWTIQLASQPAMSPDFNVLDLGFFNSIQALQHREVVTGIDDLVAAVHRA 157          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.460e-10
Identity = 34/76 (44.74%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   10 VVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            +  QQD A PH   D    +   G   GW++ LV QPA+SPD NV DLG+F S+++   RE    IDDLV  + RA
Sbjct:  290 IYIQQDNARPHVEVDDA-AVTLAGHSDGWSIQLVAQPAMSPDFNVLDLGFFNSIQALQHREVVTGIDDLVAAVHRA 364          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A397C8F5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F5_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 2.880e-10
Identity = 33/73 (45.21%), Postives = 43/73 (58.90%), Query Frame = 1
Query:   10 VVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGI 228
            +  QQD A PH   D P  +   GR  GW + LV QPA+SPD NV DLG+F S+++   R+    IDDLV  +
Sbjct:  155 IYIQQDNARPHVEVDDPAVV-AAGRSDGWAIQLVAQPAMSPDFNVLDLGFFNSIQALQHRQVVTGIDDLVAAV 226          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A6A5ABP8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ABP8_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 6.300e-10
Identity = 35/76 (46.05%), Postives = 44/76 (57.89%), Query Frame = 1
Query:   10 VVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            V  QQD A PH   D   ++   G  GGW V LV QPA+SPD NV DLG+F S+++   R+    IDDLV  +  A
Sbjct:  110 VFIQQDNARPHVQVDDL-EVATAGTIGGWRVQLVAQPAMSPDFNVLDLGFFNSIQALQHRQVVTCIDDLVAAVHAA 184          
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Match: A0A6A4ZZC0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZZC0_9STRA)

HSP 1 Score: 63.5 bits (153), Expect = 8.440e-10
Identity = 34/76 (44.74%), Postives = 43/76 (56.58%), Query Frame = 1
Query:   10 VVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVNDLGYFASLKSRVWRERYGTIDDLVEGIKRA 237
            V  QQD A PH   D    +   G  GGW + LV QPA+SPD NV DLG+F S+++   R+    IDDLV  +  A
Sbjct:  294 VYIQQDNARPHVQVDDV-AVATAGTTGGWRIQLVAQPAMSPDFNVLDLGFFNSIQALQHRQVVTCIDDLVAAVHAA 368          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5890.13513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE4.970e-2065.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A081AGH7_PHYPR2.340e-1344.30Uncharacterized protein n=3 Tax=Phytophthora paras... [more]
W2PEH8_PHYPN9.080e-1344.30Uncharacterized protein n=1 Tax=Phytophthora paras... [more]
V9F261_PHYPR1.610e-1244.30DDE_3 domain-containing protein n=1 Tax=Phytophtho... [more]
A0A6A5AA16_9STRA3.800e-1144.30Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6G0WL62_9STRA6.930e-1146.05Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KDC6_9STRA2.460e-1044.74Aste57867_3131 protein n=1 Tax=Aphanomyces stellat... [more]
A0A397C8F5_9STRA2.880e-1045.21Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5ABP8_9STRA6.300e-1046.05Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A4ZZC0_9STRA8.440e-1044.74Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5890contigH-paniculata_contig5890:10440..10706 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue7e-11
Seed eggNOG ortholog4792.ETI44833
Hectar predicted targeting categoryother localisation
EggNOG OGs2EP7I@1,2SSFX@2759,3QHT7@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size267
Cds size267
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.30584-CDS-H-paniculata_contig5890:10439..107061622930643.30584-CDS-H-paniculata_contig5890:10439..10706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5890 10440..10706 -
1691481386.101983-CDS-H-paniculata_contig5890:10439..107061691481386.101983-CDS-H-paniculata_contig5890:10439..10706Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5890 10440..10706 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5890.13513.1prot_H-paniculata_contig5890.13513.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5890 10440..10706 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5890.13513.1

>prot_H-paniculata_contig5890.13513.1 ID=prot_H-paniculata_contig5890.13513.1|Name=mRNA_H-paniculata_contig5890.13513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
GEEVVAQQDGATPHTGKDTPPKLNELGRDGGWNVNLVTQPALSPDLNVND
LGYFASLKSRVWRERYGTIDDLVEGIKRACAMRTMRQL*
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mRNA from alignment at H-paniculata_contig5890:10440..10706-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5890.13513.1 ID=mRNA_H-paniculata_contig5890.13513.1|Name=mRNA_H-paniculata_contig5890.13513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=267bp|location=Sequence derived from alignment at H-paniculata_contig5890:10440..10706- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAAGAAGTGGTCGCGCAGCAGGACGGAGCGACTCCCCACACGGGGAA AGACACGCCGCCGAAGCTTAATGAACTCGGGAGGGACGGGGGGTGGAACG TCAATCTCGTAACTCAGCCCGCGCTGTCACCAGATCTTAACGTCAACGAT TTGGGATACTTCGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGTTACGG TACGATAGACGACCTTGTGGAGGGGATAAAGAGAGCATGTGCAATGCGTA CGATGCGGCAACTTTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5890:10440..10706-

>mRNA_H-paniculata_contig5890.13513.1 ID=mRNA_H-paniculata_contig5890.13513.1|Name=mRNA_H-paniculata_contig5890.13513.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig5890:10440..10706- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTGAAGAAGTGGTCGCGCAGCAGGACGGAGCGACTCCCCACACGGGGAA
AGACACGCCGCCGAAGCTTAATGAACTCGGGAGGGACGGGGGGTGGAACG
TCAATCTCGTAACTCAGCCCGCGCTGTCACCAGATCTTAACGTCAACGAT
TTGGGATACTTCGCATCTCTGAAAAGTAGGGTTTGGAGGGAGCGTTACGG
TACGATAGACGACCTTGTGGAGGGGATAAAGAGAGCATGTGCAATGCGTA
CGATGCGGCAACTTTAGGGTGAAGAAGTGGTCGCGCAGCAGGACGGAGCG
ACTCCCCACACGGGGAAAGACACGCCGCCGAAGCTTAATGAACTCGGGAG
GGACGGGGGGTGGAACGTCAATCTCGTAACTCAGCCCGCGCTGTCACCAG
ATCTTAACGTCAACGATTTGGGATACTTCGCATCTCTGAAAAGTAGGGTT
TGGAGGGAGCGTTACGGTACGATAGACGACCTTGTGGAGGGGATAAAGAG
AGCATGTGCAATGCGTACGATGCGGCAACTTTAG
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