mRNA_H-paniculata_contig5890.13512.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5890.13512.1
Unique NamemRNA_H-paniculata_contig5890.13512.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A087HGG4_ARAAL (HSF_DOMAIN domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HGG4_ARAAL)

HSP 1 Score: 95.9 bits (237), Expect = 3.170e-21
Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query:   25 GPSPVPPFADKTYAIVD-GESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
            G S + PF  K Y +VD   SD I+SW+   +G+++FVI +STIF  ++LP+YF HSN+SSF RQLN YG    +A  WEF +  F +GR+DLL  +KRR+
Sbjct:    9 GSSSIAPFLKKCYEMVDDSSSDSIISWS--QNGDNSFVISDSTIFSVQLLPKYFKHSNFSSFVRQLNIYGFRKVDADRWEFANDGFVRGRKDLLKNVKRRK 107          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A2U1LCQ3_ARTAN (Heat shock transcription factor B3 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LCQ3_ARTAN)

HSP 1 Score: 89.7 bits (221), Expect = 9.450e-20
Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   43 PFADKTYAIVDG-ESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
            PF  KTY +VD  ++D +VSW  D  G   FV+ +S  F   +LP  F HSN+SSF RQLN YG        WEF + RFR+GR+DLLC+I+RR+
Sbjct:   27 PFLLKTYMLVDDPDTDHVVSWNADGTG---FVVWQSAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNERFRKGRKDLLCQIRRRK 118          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A5N5K777_9ROSI (HSF_DOMAIN domain-containing protein n=4 Tax=Salix TaxID=40685 RepID=A0A5N5K777_9ROSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.990e-19
Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   43 PFADKTYAIVDGES-DDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
            PF  KTY IVD  + DD++SW  D     +F++ + T+F   +LP++F HSN+SSF RQLN YG     A  WEF +  FR+G+++LLC+I+RR+
Sbjct:   34 PFLTKTYKIVDDHTLDDVISWNEDGS---SFIVWDPTLFSRDLLPKFFKHSNFSSFVRQLNTYGFKKVVADRWEFSNECFRKGKKNLLCDIQRRK 125          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A484EF72_BRELC (HSF_DOMAIN domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF72_BRELC)

HSP 1 Score: 90.5 bits (223), Expect = 5.860e-19
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1
Query:   46 FADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYG----------------RLGAEAL---WWEFKHPRFRQGRRDLLCEIKRR 321
            F +KTY +++    ++ SW    D  D+FV+K+ T F +R++P YF H  +SSF RQLN YG                + G +A    WWEF+H RF +GRRDLLCEI+RR
Sbjct:   56 FLEKTYELLERCPPEVASWT---DKGDSFVVKQPTPFAERVIPTYFKHRKFSSFVRQLNLYGFRKVRATSVVTTVDDGKTGEDASPKDWWEFRHERFVRGRRDLLCEIRRR 163          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A0N7L766_PLAHL (Hsf-type dna n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L766_PLAHL)

HSP 1 Score: 90.1 bits (222), Expect = 8.060e-19
Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   46 FADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYG-----RLGAEAL----------------WWEFKHPRFRQGRRDLLCEIKRR 321
            F +KTY +++    D+ SW +  D   +FV+K+  +F + ++P YF H  +SSF RQLN YG        A AL                WWEF+H RF +GRRDLLCEI+RR
Sbjct:   54 FLEKTYELLERCPSDVASWTIKGD---SFVVKQPAVFAEHVIPTYFKHRKFSSFVRQLNLYGFRKVRATSASALIDDIETGVEEDASPKDWWEFRHERFVRGRRDLLCEIRRR 163          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: F0YQJ6_AURAN (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQJ6_AURAN)

HSP 1 Score: 83.2 bits (204), Expect = 1.070e-18
Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   43 PFADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALW--WEFKHPRFRQGRRDLLCEIK 315
            PFA KTYA+++G    +  W+   D  D+ VI ++      ++P+YFNH+N+ SFTRQLN YG    +     WEFKH  FR+GR +LL +I+
Sbjct:    1 PFASKTYAMINGLDGTVGGWS---DAGDSMVILDAETLASEVIPQYFNHNNFKSFTRQLNYYGFRALQGFRSPWEFKHVNFRRGRPELLVQIR 90          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A565AYG1_9BRAS (HSF_DOMAIN domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565AYG1_9BRAS)

HSP 1 Score: 89.4 bits (220), Expect = 1.230e-18
Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query:   25 GPSPVPPFADKTYAIVD-GESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
            G S V PF  K Y +VD   SD I+SW+   +G+++FVI ++T+F  +ILP+YF HSN+SSF RQLN YG    +A  WEF +  F +G++DLL  + RR+
Sbjct:    9 GSSSVAPFLKKCYDMVDDSSSDSIISWS--KNGDNSFVIFDTTVFSVQILPKYFKHSNFSSFVRQLNIYGFRKVDADRWEFANDGFVKGQKDLLKNVIRRK 107          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A1Q3BWY1_CEPFO (HSF_DNA-bind domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BWY1_CEPFO)

HSP 1 Score: 87.8 bits (216), Expect = 1.360e-18
Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query:   43 PFADKTYAIVDGES-DDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
            PF  KTY +VD  + DD++SW  D     +F++   T+F   +LP+YF HSN+SSF RQLN YG        WEF +  FR+G + LLCEI+RR+
Sbjct:   24 PFLTKTYQLVDDHAVDDVISWNHDGS---SFIVWNPTVFAKDLLPKYFKHSNFSSFVRQLNTYGFKKLVPDRWEFTNDSFRRGEKRLLCEIQRRK 115          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A1U8G488_CAPAN (HSF_DOMAIN domain-containing protein n=5 Tax=Capsicum TaxID=4071 RepID=A0A1U8G488_CAPAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.910e-18
Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query:   40 PPFADKTYAIVDGES-DDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
            PPF  KTY +VD +S DD+VSW+    G ++F++ +   F   +LPRYF HSN+SSF RQLN YG        WEF H  F +G+R +L  I+RR+
Sbjct:   35 PPFLTKTYELVDDQSTDDVVSWSR---GNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQWEFAHEGFLRGQRHILKTIRRRK 127          
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: UPI00051C95E2 (heat stress transcription factor A-6b-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C95E2)

HSP 1 Score: 83.2 bits (204), Expect = 6.450e-18
Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1
Query:   40 PPFADKTYAIVDG-ESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
            PPF  KTY +VD   ++DIVSW+    G ++F++ +   F   +LPRYF HSN+SSF RQLN YG        WEF +  F +G+R LL  I+RR+
Sbjct:   37 PPFLTKTYELVDDPNTNDIVSWSR---GNNSFIVWDPQTFSMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQWEFANEGFLRGQRHLLKAIRRRK 129          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A087HGG4_ARAAL3.170e-2149.50HSF_DOMAIN domain-containing protein n=1 Tax=Arabi... [more]
A0A2U1LCQ3_ARTAN9.450e-2049.47Heat shock transcription factor B3 n=1 Tax=Artemis... [more]
A0A5N5K777_9ROSI1.990e-1946.32HSF_DOMAIN domain-containing protein n=4 Tax=Salix... [more]
A0A484EF72_BRELC5.860e-1942.34HSF_DOMAIN domain-containing protein n=1 Tax=Bremi... [more]
A0A0N7L766_PLAHL8.060e-1940.71Hsf-type dna n=1 Tax=Plasmopara halstedii TaxID=47... [more]
F0YQJ6_AURAN1.070e-1843.01HSF_DOMAIN domain-containing protein (Fragment) n=... [more]
A0A565AYG1_9BRAS1.230e-1847.52HSF_DOMAIN domain-containing protein n=1 Tax=Arabi... [more]
A0A1Q3BWY1_CEPFO1.360e-1846.32HSF_DNA-bind domain-containing protein n=1 Tax=Cep... [more]
A0A1U8G488_CAPAN1.910e-1846.88HSF_DOMAIN domain-containing protein n=5 Tax=Capsi... [more]
UPI00051C95E26.450e-1845.83heat stress transcription factor A-6b-like n=1 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5890contigH-paniculata_contig5890:5224..6189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score95.9
Seed ortholog evalue1.2e-17
Seed eggNOG ortholog50452.A0A087HGG4
KEGG koko:K09419
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003700,GO:0006355,GO:0008150,GO:0009889,GO:0010468,GO:0010556,GO:0019219,GO:0019222,GO:0031323,GO:0031326,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0080090,GO:0140110,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.heat shock factor
EggNOG OGs37NQ1@33090,3GDIP@35493,3HPYC@3699,COG5169@1,KOG0627@2759
COG Functional cat.K
Best tax levelBrassicales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03000
Exons2
Model size324
Cds size306
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5890.13512.1prot_H-paniculata_contig5890.13512.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5890 5242..6189 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.2258115-UTR-H-paniculata_contig5890:5223..52411622930643.2258115-UTR-H-paniculata_contig5890:5223..5241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5890 5224..5241 +
1691481386.0765913-UTR-H-paniculata_contig5890:5223..52411691481386.0765913-UTR-H-paniculata_contig5890:5223..5241Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5890 5224..5241 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.2438457-CDS-H-paniculata_contig5890:5241..54521622930643.2438457-CDS-H-paniculata_contig5890:5241..5452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5890 5242..5452 +
1691481386.0859697-CDS-H-paniculata_contig5890:5241..54521691481386.0859697-CDS-H-paniculata_contig5890:5241..5452Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5890 5242..5452 +
1622930643.2595723-CDS-H-paniculata_contig5890:6094..61891622930643.2595723-CDS-H-paniculata_contig5890:6094..6189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5890 6095..6189 +
1691481386.093528-CDS-H-paniculata_contig5890:6094..61891691481386.093528-CDS-H-paniculata_contig5890:6094..6189Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5890 6095..6189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5890.13512.1

>prot_H-paniculata_contig5890.13512.1 ID=prot_H-paniculata_contig5890.13512.1|Name=mRNA_H-paniculata_contig5890.13512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MAGPSPVPPFADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRI
LPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKR
RE
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mRNA from alignment at H-paniculata_contig5890:5224..6189+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5890.13512.1 ID=mRNA_H-paniculata_contig5890.13512.1|Name=mRNA_H-paniculata_contig5890.13512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=966bp|location=Sequence derived from alignment at H-paniculata_contig5890:5224..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACTTCAACAGATACCCAGATGGCTGGGCCGTCACCTGTGCCACCATTTGC GGATAAAACTTATGCTATCGTGGATGGCGAGTCGGATGACATCGTTTCGT GGGCGGTTGACGCGGACGGAGAGGATACATTCGTGATCAAAGAGTCGACG ATATTTCAGGACAGGATACTGCCACGGTATTTTAACCATTCCAACTACAG CTCCTTCACCAGGCAATTGAACAACTACGGTGAGGCAAAGCAGTAAGCGC GTGCGGTAGGGTTTGTTTGTTTCCAAGGAGAAGATGGTTAGCTAGTGCAG TGTAGGCCAGACATTCAAACCGCCAGCTATTGTGGTGTGGAAGGCATCTA ATCCACGTAGGGAACTGAAGAAGGTGGGTGGTGACGAGAGAGTTCATTGA TGTACTCACCTGGAAAACTGGAATTTTAGTTGGGGGAAAACAACAGCGCG GGAAAACCCTTGGTCAAGCAGTGGAGAGACGCATGGATTGTGCGCCGTTC GCGGGAAAACAAACGCTGTTCTCATTCAGGTGTTCAAACTATACACCGAT AACTCAAATGGGCTTACCTGATCCCCTCTGTCGGGAGAGCACGCTGACTT GCCCGGGTAGATCCTTGATGCATCATGTACCTCATCCACCACACTTTTCC TGTACTATATTGAATATGTAGTGATCTTTCCGTTGAATGCATAACTTTCA CCTGTCCGTCCCCCGAAGCACAATCTGGGTGGTGCATTTCATCCACACTG CATTTTGTGCCCGATATACCCAATATCTATGGTCTCAAATATCAGAATTT CATTTTTGCAGGATTTATTAAAGTTCGGAGCCCGACCAGCACTGAGGCAG CAGCTGGCAGTACCCGCGGAGGGCGGCTGGGGGCAGAGGCGTTGTGGTGG GAATTCAAGCATCCCCGATTTCGCCAAGGGCGGAGGGACTTGCTTTGTGA GATCAAACGACGCGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5890:5224..6189+

>mRNA_H-paniculata_contig5890.13512.1 ID=mRNA_H-paniculata_contig5890.13512.1|Name=mRNA_H-paniculata_contig5890.13512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig5890:5224..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTGGGCCGTCACCTGTGCCACCATTTGCGGATAAAACTTATGCTAT
CGTGGATGGCGAGTCGGATGACATCGTTTCGTGGGCGGTTGACGCGGACG
GAGAGGATACATTCGTGATCAAAGAGTCGACGATATTTCAGGACAGGATA
CTGCCACGGTATTTTAACCATTCCAACTACAGCTCCTTCACCAGGCAATT
GAACAACTACGATGGCTGGGCCGTCACCTGTGCCACCATTTGCGGATAAA
ACTTATGCTATCGTGGATGGCGAGTCGGATGACATCGTTTCGTGGGCGGT
TGACGCGGACGGAGAGGATACATTCGTGATCAAAGAGTCGACGATATTTC
AGGACAGGATACTGCCACGGTATTTTAACCATTCCAACTACAGCTCCTTC
ACCAGGCAATTGAACAACTACGGGCGGCTGGGGGCAGAGGCGTTGTGGTG
GGAATTCAAGCATCCCCGATTTCGCCAAGGGCGGAGGGACTTGCTTTGTG
AGATCAAACGACGCGAGGGCGGCTGGGGGCAGAGGCGTTGTGGTGGGAAT
TCAAGCATCCCCGATTTCGCCAAGGGCGGAGGGACTTGCTTTGTGAGATC
AAACGACGCGAG
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