mRNA_H-paniculata_contig5890.13512.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A087HGG4_ARAAL (HSF_DOMAIN domain-containing protein n=1 Tax=Arabis alpina TaxID=50452 RepID=A0A087HGG4_ARAAL) HSP 1 Score: 95.9 bits (237), Expect = 3.170e-21 Identity = 50/101 (49.50%), Postives = 69/101 (68.32%), Query Frame = 1
Query: 25 GPSPVPPFADKTYAIVD-GESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
G S + PF K Y +VD SD I+SW+ +G+++FVI +STIF ++LP+YF HSN+SSF RQLN YG +A WEF + F +GR+DLL +KRR+
Sbjct: 9 GSSSIAPFLKKCYEMVDDSSSDSIISWS--QNGDNSFVISDSTIFSVQLLPKYFKHSNFSSFVRQLNIYGFRKVDADRWEFANDGFVRGRKDLLKNVKRRK 107
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A2U1LCQ3_ARTAN (Heat shock transcription factor B3 n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1LCQ3_ARTAN) HSP 1 Score: 89.7 bits (221), Expect = 9.450e-20 Identity = 47/95 (49.47%), Postives = 61/95 (64.21%), Query Frame = 1
Query: 43 PFADKTYAIVDG-ESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
PF KTY +VD ++D +VSW D G FV+ +S F +LP F HSN+SSF RQLN YG WEF + RFR+GR+DLLC+I+RR+
Sbjct: 27 PFLLKTYMLVDDPDTDHVVSWNADGTG---FVVWQSAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATSRWEFCNERFRKGRKDLLCQIRRRK 118
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A5N5K777_9ROSI (HSF_DOMAIN domain-containing protein n=4 Tax=Salix TaxID=40685 RepID=A0A5N5K777_9ROSI) HSP 1 Score: 90.5 bits (223), Expect = 1.990e-19 Identity = 44/95 (46.32%), Postives = 64/95 (67.37%), Query Frame = 1
Query: 43 PFADKTYAIVDGES-DDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
PF KTY IVD + DD++SW D +F++ + T+F +LP++F HSN+SSF RQLN YG A WEF + FR+G+++LLC+I+RR+
Sbjct: 34 PFLTKTYKIVDDHTLDDVISWNEDGS---SFIVWDPTLFSRDLLPKFFKHSNFSSFVRQLNTYGFKKVVADRWEFSNECFRKGKKNLLCDIQRRK 125
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A484EF72_BRELC (HSF_DOMAIN domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EF72_BRELC) HSP 1 Score: 90.5 bits (223), Expect = 5.860e-19 Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1
Query: 46 FADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYG----------------RLGAEAL---WWEFKHPRFRQGRRDLLCEIKRR 321
F +KTY +++ ++ SW D D+FV+K+ T F +R++P YF H +SSF RQLN YG + G +A WWEF+H RF +GRRDLLCEI+RR
Sbjct: 56 FLEKTYELLERCPPEVASWT---DKGDSFVVKQPTPFAERVIPTYFKHRKFSSFVRQLNLYGFRKVRATSVVTTVDDGKTGEDASPKDWWEFRHERFVRGRRDLLCEIRRR 163
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A0N7L766_PLAHL (Hsf-type dna n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0N7L766_PLAHL) HSP 1 Score: 90.1 bits (222), Expect = 8.060e-19 Identity = 46/113 (40.71%), Postives = 63/113 (55.75%), Query Frame = 1
Query: 46 FADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYG-----RLGAEAL----------------WWEFKHPRFRQGRRDLLCEIKRR 321
F +KTY +++ D+ SW + D +FV+K+ +F + ++P YF H +SSF RQLN YG A AL WWEF+H RF +GRRDLLCEI+RR
Sbjct: 54 FLEKTYELLERCPSDVASWTIKGD---SFVVKQPAVFAEHVIPTYFKHRKFSSFVRQLNLYGFRKVRATSASALIDDIETGVEEDASPKDWWEFRHERFVRGRRDLLCEIRRR 163
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: F0YQJ6_AURAN (HSF_DOMAIN domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YQJ6_AURAN) HSP 1 Score: 83.2 bits (204), Expect = 1.070e-18 Identity = 40/93 (43.01%), Postives = 58/93 (62.37%), Query Frame = 1
Query: 43 PFADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALW--WEFKHPRFRQGRRDLLCEIK 315
PFA KTYA+++G + W+ D D+ VI ++ ++P+YFNH+N+ SFTRQLN YG + WEFKH FR+GR +LL +I+
Sbjct: 1 PFASKTYAMINGLDGTVGGWS---DAGDSMVILDAETLASEVIPQYFNHNNFKSFTRQLNYYGFRALQGFRSPWEFKHVNFRRGRPELLVQIR 90
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A565AYG1_9BRAS (HSF_DOMAIN domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565AYG1_9BRAS) HSP 1 Score: 89.4 bits (220), Expect = 1.230e-18 Identity = 48/101 (47.52%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 25 GPSPVPPFADKTYAIVD-GESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
G S V PF K Y +VD SD I+SW+ +G+++FVI ++T+F +ILP+YF HSN+SSF RQLN YG +A WEF + F +G++DLL + RR+
Sbjct: 9 GSSSVAPFLKKCYDMVDDSSSDSIISWS--KNGDNSFVIFDTTVFSVQILPKYFKHSNFSSFVRQLNIYGFRKVDADRWEFANDGFVKGQKDLLKNVIRRK 107
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A1Q3BWY1_CEPFO (HSF_DNA-bind domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3BWY1_CEPFO) HSP 1 Score: 87.8 bits (216), Expect = 1.360e-18 Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
Query: 43 PFADKTYAIVDGES-DDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
PF KTY +VD + DD++SW D +F++ T+F +LP+YF HSN+SSF RQLN YG WEF + FR+G + LLCEI+RR+
Sbjct: 24 PFLTKTYQLVDDHAVDDVISWNHDGS---SFIVWNPTVFAKDLLPKYFKHSNFSSFVRQLNTYGFKKLVPDRWEFTNDSFRRGEKRLLCEIQRRK 115
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: A0A1U8G488_CAPAN (HSF_DOMAIN domain-containing protein n=5 Tax=Capsicum TaxID=4071 RepID=A0A1U8G488_CAPAN) HSP 1 Score: 88.2 bits (217), Expect = 1.910e-18 Identity = 45/96 (46.88%), Postives = 61/96 (63.54%), Query Frame = 1
Query: 40 PPFADKTYAIVDGES-DDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
PPF KTY +VD +S DD+VSW+ G ++F++ + F +LPRYF HSN+SSF RQLN YG WEF H F +G+R +L I+RR+
Sbjct: 35 PPFLTKTYELVDDQSTDDVVSWSR---GNNSFIVWDPQTFAMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQWEFAHEGFLRGQRHILKTIRRRK 127
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Match: UPI00051C95E2 (heat stress transcription factor A-6b-like n=1 Tax=Nicotiana tomentosiformis TaxID=4098 RepID=UPI00051C95E2) HSP 1 Score: 83.2 bits (204), Expect = 6.450e-18 Identity = 44/96 (45.83%), Postives = 60/96 (62.50%), Query Frame = 1
Query: 40 PPFADKTYAIVDG-ESDDIVSWAVDADGEDTFVIKESTIFQDRILPRYFNHSNYSSFTRQLNNYGRLGAEALWWEFKHPRFRQGRRDLLCEIKRRE 324
PPF KTY +VD ++DIVSW+ G ++F++ + F +LPRYF HSN+SSF RQLN YG WEF + F +G+R LL I+RR+
Sbjct: 37 PPFLTKTYELVDDPNTNDIVSWSR---GNNSFIVWDPQTFSMNLLPRYFKHSNFSSFVRQLNTYGFRKVNPDQWEFANEGFLRGQRHLLKAIRRRK 129 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5890.13512.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5890.13512.1 >prot_H-paniculata_contig5890.13512.1 ID=prot_H-paniculata_contig5890.13512.1|Name=mRNA_H-paniculata_contig5890.13512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp MAGPSPVPPFADKTYAIVDGESDDIVSWAVDADGEDTFVIKESTIFQDRIback to top mRNA from alignment at H-paniculata_contig5890:5224..6189+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5890.13512.1 ID=mRNA_H-paniculata_contig5890.13512.1|Name=mRNA_H-paniculata_contig5890.13512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=966bp|location=Sequence derived from alignment at H-paniculata_contig5890:5224..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5890:5224..6189+ >mRNA_H-paniculata_contig5890.13512.1 ID=mRNA_H-paniculata_contig5890.13512.1|Name=mRNA_H-paniculata_contig5890.13512.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig5890:5224..6189+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |