mRNA_H-paniculata_contig58880.13511.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58880.13511.1
Unique NamemRNA_H-paniculata_contig58880.13511.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 3.060e-36
Identity = 65/124 (52.42%), Postives = 85/124 (68.55%), Query Frame = 1
Query:   40 GIPEGVSHLGCIEDDLSNRVLAIKYSHNDMTMEMCANYCEGESFFGTQWGRECWCG--DEKSNIPTAR-GKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSL-VPEGTKYLGCYRDKISDRVL 399
            G PEGV +LGC++D   +R+L   Y  +D+T EMCA YCEG+ FFG Q+G ECWCG  DEK +    R G   C+YPCAGD +Q CGG  A+SLY+YG + +  +PEG++YLGCY D   +R L
Sbjct:  384 GSPEGVMYLGCVKDSRDDRLLDSVYRSSDLTTEMCATYCEGDDFFGMQYGSECWCGSTDEKDDEDLFRHGSTTCEYPCAGDEEQTCGGYWAISLYEYGSALATDIPEGSRYLGCYSDHRFERAL 507          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: D8LDH3_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH3_ECTSI)

HSP 1 Score: 120 bits (300), Expect = 1.500e-29
Identity = 57/124 (45.97%), Postives = 76/124 (61.29%), Query Frame = 1
Query:   40 GIPEGVSHLGCIEDDLSNRVLAIKYSHNDMTMEMCANYCEGESFFGTQWGRECWCGD---EKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQYGG-SPSLVPEGTKYLGCYRDKISDRVL 399
            G P+G+  LGC++D   +R+L   Y   D+T E C+ YCE E FFG Q+G ECWCG    E        G   C+  C+GD  + CGGS A+SLYQ+G  SP  +PEGT+YLGC++D   +R L
Sbjct:  286 GPPQGIMSLGCVKDADHDRLLDNIYRFEDLTPEKCSKYCESEPFFGMQYGSECWCGTGAGEDVEDMFRHGSATCNMACSGDKDKTCGGSWAMSLYQHGSASPGDIPEGTRYLGCFKDNRFNRAL 409          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: D7FRS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS1_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 1.750e-21
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = 1
Query:   64 LGCIEDDLSNRVLA-IKYSHNDMTMEMCANYCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSLVPEGTKYLGCYRDKISDRVL 399
            LGC EDD  +R++  +  S N MT E+C   C G ++F TQ+GRECWCG   ++         C Y CAGD+ Q CGG  A ++Y Y G    VP  + ++GCY+D+   R++
Sbjct:  744 LGCYEDDREDRIMDDLALSDNAMTTELCEQTCLGNTYFATQYGRECWCGSAGADYILHGESADCTYACAGDADQTCGGFDAANVYLYTGDD--VPTTSSFVGCYQDESDARIM 854          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: D7FRS2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRS2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.580e-21
Identity = 47/117 (40.17%), Postives = 66/117 (56.41%), Query Frame = 1
Query:   52 GVSHLGCIEDDLSNRVLA-IKYSHNDMTMEMCANYCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSLVPEGTKYLGCYRDKISDRVL 399
            G   LGC EDD  NR++  +  S   MT E+C   C G +FF TQ+GRECWCG   ++         C Y CAGD+ Q CGG  A ++Y Y G  +L    + ++GCY+D+   R++
Sbjct:  325 GPLSLGCYEDDRENRIMDDLALSDFSMTTELCEQTCLGNTFFATQYGRECWCGSAGADYTLHGESTDCTYACAGDADQTCGGFDAANVYLYTGDDALST--STFVGCYQDESDARIM 439          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: A0A6H5KQZ0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ0_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.360e-21
Identity = 52/124 (41.94%), Postives = 71/124 (57.26%), Query Frame = 1
Query:   40 GIPEGVSHLGCIEDDLSNRVLAIKYSHNDMTMEMCANYCEGESFFGTQWGRECWCG--DEKSNIPTAR-GKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSL-VPEGTKYLGCYRDKISDRVL 399
            G PEGV HLGC++D  ++R+L   Y  +++T E                   CWCG  DEK +    R G   C+YPCAGD +Q CGG  A+SLY+YG + +  +PEG++YLGCY D   +R L
Sbjct:  645 GSPEGVMHLGCVKDSRNDRLLDSVYRSSNLTTE-------------------CWCGSTDEKDDEDLFRHGSATCEYPCAGDEEQTCGGYWAISLYEYGSALATDIPEGSRYLGCYSDHRFERAL 749          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: R8BD02_PHAM7 (Putative wsc domain-containing protein n=1 Tax=Phaeoacremonium minimum (strain UCR-PA7) TaxID=1286976 RepID=R8BD02_PHAM7)

HSP 1 Score: 96.7 bits (239), Expect = 6.290e-21
Identity = 46/122 (37.70%), Postives = 73/122 (59.84%), Query Frame = 1
Query:   46 PEGVSHLGCIEDDLSNRVLAIKYSHNDMTMEMCANYCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSLVPEGT----KYLGCYRDKISDRVL 399
            P G S LGC  +  S R L+ +Y ++DMT+ +CA+ C+G +F+G ++G EC+CG+E ++         CD  C+G+S ++CGG   LSLY+ G S  L   G     +Y+GCY +    ++L
Sbjct:  227 PTGPSSLGCWSEPASGRALSERYWNSDMTVGLCASLCDGYTFYGVEYGSECYCGNELASDAFPVDSSLCDARCSGNSAEICGGRMLLSLYENGDSGVLPTPGGPFDFEYVGCYSEPDGSKLL 348          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: A0A6H5KL84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL84_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 2.350e-20
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   37 IGIPEGVSHLGCIEDDLSNRVLAIKYSHNDMTMEMCANYCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSLVPEGTKYLGCYRDKISDRV 396
            + IP   ++ GC  D  +NRV     S ++MT E+CA  C+  +F+GTQ+ RECWCGD  +   +  G   CD PC+G+S++ CGGS ++ +Y          +   YLGC+ D    R+
Sbjct:  102 VEIPVDPAYRGCYSDPGTNRVFVQDDSSDEMTAEVCAAQCDESAFYGTQYSRECWCGDINAQY-SVNGVGVCDMPCSGNSEESCGGSYSMDVYA---------QDPAYLGCFSDPADGRM 211          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: A0A6H5KAS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS7_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 5.410e-20
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = 1
Query:   37 IGIPEGVSHLGCIEDDLSNRVLAIKYSHNDMTMEMCANYCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSLVPEGTKYLGCYRDKISDRV 396
            + IP   ++ GC  D  +NRV     S ++MT E+CA  C+  +F+GTQ+ RECWCGD  +   +  G   CD PC+G+S++ CGGS ++ +Y          +   YLGC+ D    R+
Sbjct:   83 VEIPVDPAYRGCYSDPGTNRVFVQDDSSDEMTAEVCAAQCDESAFYGTQYSRECWCGDINAQY-SVNGVGVCDMPCSGNSEESCGGSYSMDVYA---------QDPAYLGCFSDPADGRM 192          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: D7FUE6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE6_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.160e-18
Identity = 43/113 (38.05%), Postives = 63/113 (55.75%), Query Frame = 1
Query:   64 LGCIEDDLSNRVLA-IKYSHNDMTMEMCANYCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQYGGSPSLVPEGTKYLGCYRDKISDRVL 399
            LGC EDD  +R++  +  S   MT E+C   C G ++F TQ+GRECWCG              C Y CAGD+ Q CGG  A ++Y+Y  +    P  + ++GCY+D+   R++
Sbjct:  634 LGCYEDDREDRIMDDLALSDYSMTTELCEQTCLGNTYFATQYGRECWCGSAGVEYALHGESTDCTYACAGDADQTCGGFDAANVYRY--TDESTPT-SSFVGCYQDESDARIM 743          
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Match: A0A1B8C8J0_9PEZI (Uncharacterized protein n=6 Tax=Pseudogymnoascus TaxID=78156 RepID=A0A1B8C8J0_9PEZI)

HSP 1 Score: 89.7 bits (221), Expect = 2.150e-18
Identity = 39/84 (46.43%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   70 CIEDDLSNRVLAIKYSH-NDMTMEMCANYCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSRALSLYQ 318
            C  +  + R LA K +  +DMT+  CA +C    +FGT+W +ECWCG+  +         +CDYPCAGD+ Q+CGGSR LSLYQ
Sbjct:  254 CWAEPAAGRALAAKSTAADDMTLAKCATFCAAYPYFGTEWSKECWCGNAPATGSALAPLGECDYPCAGDASQLCGGSRRLSLYQ 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58880.13511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDH2_ECTSI3.060e-3652.42WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDH3_ECTSI1.500e-2945.97WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FRS1_ECTSI1.750e-2140.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FRS2_ECTSI2.580e-2140.17Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KQZ0_9PHAE4.360e-2141.94WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
R8BD02_PHAM76.290e-2137.70Putative wsc domain-containing protein n=1 Tax=Pha... [more]
A0A6H5KL84_9PHAE2.350e-2036.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS7_9PHAE5.410e-2036.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUE6_ECTSI1.160e-1838.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1B8C8J0_9PEZI2.150e-1846.43Uncharacterized protein n=6 Tax=Pseudogymnoascus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58880contigH-paniculata_contig58880:34..778 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score139.8
Seed ortholog evalue9.1e-31
Seed eggNOG ortholog2880.D8LDH2
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size399
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.157543-CDS-H-paniculata_contig58880:33..1711622930643.157543-CDS-H-paniculata_contig58880:33..171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58880 34..171 +
1691481386.0573645-CDS-H-paniculata_contig58880:33..1711691481386.0573645-CDS-H-paniculata_contig58880:33..171Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58880 34..171 +
1622930643.177616-CDS-H-paniculata_contig58880:517..7781622930643.177616-CDS-H-paniculata_contig58880:517..778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58880 518..778 +
1691481386.0681157-CDS-H-paniculata_contig58880:517..7781691481386.0681157-CDS-H-paniculata_contig58880:517..778Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58880 518..778 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58880.13511.1prot_H-paniculata_contig58880.13511.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58880 34..778 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58880.13511.1

>prot_H-paniculata_contig58880.13511.1 ID=prot_H-paniculata_contig58880.13511.1|Name=mRNA_H-paniculata_contig58880.13511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
LKLGFPFHQYAVIGIPEGVSHLGCIEDDLSNRVLAIKYSHNDMTMEMCAN
YCEGESFFGTQWGRECWCGDEKSNIPTARGKVKCDYPCAGDSKQVCGGSR
ALSLYQYGGSPSLVPEGTKYLGCYRDKISDRVL
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mRNA from alignment at H-paniculata_contig58880:34..778+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58880.13511.1 ID=mRNA_H-paniculata_contig58880.13511.1|Name=mRNA_H-paniculata_contig58880.13511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=745bp|location=Sequence derived from alignment at H-paniculata_contig58880:34..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAACTTGGGTTCCCATTTCACCAATATGCTGTTATTGGTATTCCCGA GGGAGTTTCGCACCTGGGTTGCATTGAAGACGACCTGTCCAATCGCGTGC TGGCTATCAAATACTCGCACAATGATATGACTATGGAGGTAAGCCTCAAC AGGAATATGCAGTTCACAATGAATGGTTGGTATAATGAAAGGTGTTTCGT CCGACAATCAACGCTGACTATGATAGATGTATTTGCGTGTTTGGCGAGGC TGCCCACAACATCAAGCGTATATCGCTTCGGCTCGCTTCCGGTATCAAGT CCGCTGATGGTACTATGCTGATACTTACGATTCCTTCAAACCACGCGATG TCACGGACCAGGGAGCTGTCTTCGCATCGATATTCCTGGATCACCTTGCT CCCCCGATCATAGGGTTGGTTACGAAGTCAACGCTGGCCACCACAAACTG CGTGTATGTATTGCATTGATATTCGTTTGTTCAGATGTGTGCTAACTACT GCGAAGGGGAGAGCTTTTTTGGAACTCAATGGGGTCGTGAGTGCTGGTGC GGGGATGAGAAGTCGAATATTCCTACAGCCCGTGGCAAGGTTAAGTGTGA CTATCCGTGCGCAGGAGATTCCAAACAAGTATGCGGGGGCTCAAGGGCCT TGTCTCTCTACCAGTACGGCGGCTCACCTTCATTGGTTCCAGAGGGCACC AAGTACTTGGGCTGCTACCGCGATAAGATTTCAGACCGCGTCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig58880:34..778+

>mRNA_H-paniculata_contig58880.13511.1 ID=mRNA_H-paniculata_contig58880.13511.1|Name=mRNA_H-paniculata_contig58880.13511.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig58880:34..778+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTCAAACTTGGGTTCCCATTTCACCAATATGCTGTTATTGGTATTCCCGA
GGGAGTTTCGCACCTGGGTTGCATTGAAGACGACCTGTCCAATCGCGTGC
TGGCTATCAAATACTCGCACAATGATATGACTATGGAGCTCAAACTTGGG
TTCCCATTTCACCAATATGCTGTTATTGGTATTCCCGAGGGAGTTTCGCA
CCTGGGTTGCATTGAAGACGACCTGTCCAATCGCGTGCTGGCTATCAAAT
ACTCGCACAATGATATGACTATGGAGATGTGTGCTAACTACTGCGAAGGG
GAGAGCTTTTTTGGAACTCAATGGGGTCGTGAGTGCTGGTGCGGGGATGA
GAAGTCGAATATTCCTACAGCCCGTGGCAAGGTTAAGTGTGACTATCCGT
GCGCAGGAGATTCCAAACAAGTATGCGGGGGCTCAAGGGCCTTGTCTCTC
TACCAGTACGGCGGCTCACCTTCATTGGTTCCAGAGGGCACCAAGTACTT
GGGCTGCTACCGCGATAAGATTTCAGACCGCGTCTTGATGTGTGCTAACT
ACTGCGAAGGGGAGAGCTTTTTTGGAACTCAATGGGGTCGTGAGTGCTGG
TGCGGGGATGAGAAGTCGAATATTCCTACAGCCCGTGGCAAGGTTAAGTG
TGACTATCCGTGCGCAGGAGATTCCAAACAAGTATGCGGGGGCTCAAGGG
CCTTGTCTCTCTACCAGTACGGCGGCTCACCTTCATTGGTTCCAGAGGGC
ACCAAGTACTTGGGCTGCTACCGCGATAAGATTTCAGACCGCGTCTTG
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