mRNA_H-paniculata_contig58872.13510.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58872.13510.1
Unique NamemRNA_H-paniculata_contig58872.13510.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58872.13510.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58872contigH-paniculata_contig58872:264..862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size599
Cds size435
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58872.13510.1prot_H-paniculata_contig58872.13510.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58872 276..710 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.0789971-UTR-H-paniculata_contig58872:263..2751622930643.0789971-UTR-H-paniculata_contig58872:263..275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58872 264..275 +
1691481386.0253952-UTR-H-paniculata_contig58872:263..2751691481386.0253952-UTR-H-paniculata_contig58872:263..275Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58872 264..275 +
1622930643.116038-UTR-H-paniculata_contig58872:710..8621622930643.116038-UTR-H-paniculata_contig58872:710..862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58872 711..862 +
1691481386.0448968-UTR-H-paniculata_contig58872:710..8621691481386.0448968-UTR-H-paniculata_contig58872:710..862Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58872 711..862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930643.0992022-CDS-H-paniculata_contig58872:275..7101622930643.0992022-CDS-H-paniculata_contig58872:275..710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58872 276..710 +
1691481386.0355928-CDS-H-paniculata_contig58872:275..7101691481386.0355928-CDS-H-paniculata_contig58872:275..710Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58872 276..710 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58872.13510.1

>prot_H-paniculata_contig58872.13510.1 ID=prot_H-paniculata_contig58872.13510.1|Name=mRNA_H-paniculata_contig58872.13510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=145bp
MLIAIKSRALKTCFLERVMDTELSDQVCTLTDNRGLWMLENILEDPQPGE
EYAFFDAGCPVNRLNPPPHQRLQAAMSTGSRVGTRLGMEQALVSNGGEYV
PHAVADNRGLVGTVGGAGAGTSSRDTDGALIGGDSSHVGRTGRN*
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mRNA from alignment at H-paniculata_contig58872:264..862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58872.13510.1 ID=mRNA_H-paniculata_contig58872.13510.1|Name=mRNA_H-paniculata_contig58872.13510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=599bp|location=Sequence derived from alignment at H-paniculata_contig58872:264..862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAATAAGCCGCGATGCTGATCGCCATAAAGTCCAGGGCCCTGAAGACCTG
CTTCCTGGAGAGGGTGATGGATACCGAACTCTCCGACCAAGTCTGCACAT
TAACCGACAATCGTGGACTATGGATGTTGGAGAATATCCTGGAAGACCCC
CAACCAGGAGAAGAATACGCCTTCTTCGACGCCGGCTGCCCGGTGAACCG
CCTCAACCCCCCGCCCCATCAGCGACTCCAGGCCGCCATGTCGACCGGCT
CAAGGGTTGGGACTCGCCTCGGCATGGAGCAGGCGTTGGTCAGCAACGGT
GGGGAGTATGTGCCGCATGCTGTCGCAGATAATCGCGGACTCGTCGGGAC
CGTTGGGGGAGCGGGTGCGGGCACATCTTCCCGGGACACCGATGGTGCAC
TCATTGGGGGCGACTCTTCGCATGTTGGCAGAACAGGGAGGAATTAGCGC
CGAACAGCAAACTACGGTGCTGCCGCCCGGGCTGGTCGCGTGGGCCCACG
GAGGACGGAGCGAAGACGGATCGCTGCTTACACCGAACATCGATGTTCTA
GGAGGGCACGGCGCGCCAGGGAGGAACTCCCGTCGGCTGCAACGGGATG
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Coding sequence (CDS) from alignment at H-paniculata_contig58872:264..862+

>mRNA_H-paniculata_contig58872.13510.1 ID=mRNA_H-paniculata_contig58872.13510.1|Name=mRNA_H-paniculata_contig58872.13510.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at H-paniculata_contig58872:264..862+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTGATCGCCATAAAGTCCAGGGCCCTGAAGACCTGCTTCCTGGAGAG
GGTGATGGATACCGAACTCTCCGACCAAGTCTGCACATTAACCGACAATC
GTGGACTATGGATGTTGGAGAATATCCTGGAAGACCCCCAACCAGGAGAA
GAATACGCCTTCTTCGACGCCGGCTGCCCGGTGAACCGCCTCAACCCCCC
GCCCCATCAGCGACTCCAGGCCGCCATGTCGACCGGCTCAAGGGTTGGGA
CTCGCCTCGGCATGGAGCAGGCGTTGGTCAGCAACGGTGGGGAGTATGTG
CCGCATGCTGTCGCAGATAATCGCGGACTCGTCGGGACCGTTGGGGGAGC
GGGTGCGGGCACATCTTCCCGGGACACCGATGGTGCACTCATTGGGGGCG
ACTCTTCGCATGTTGGCAGAACAGGGAGGAATTAGATGCTGATCGCCATA
AAGTCCAGGGCCCTGAAGACCTGCTTCCTGGAGAGGGTGATGGATACCGA
ACTCTCCGACCAAGTCTGCACATTAACCGACAATCGTGGACTATGGATGT
TGGAGAATATCCTGGAAGACCCCCAACCAGGAGAAGAATACGCCTTCTTC
GACGCCGGCTGCCCGGTGAACCGCCTCAACCCCCCGCCCCATCAGCGACT
CCAGGCCGCCATGTCGACCGGCTCAAGGGTTGGGACTCGCCTCGGCATGG
AGCAGGCGTTGGTCAGCAACGGTGGGGAGTATGTGCCGCATGCTGTCGCA
GATAATCGCGGACTCGTCGGGACCGTTGGGGGAGCGGGTGCGGGCACATC
TTCCCGGGACACCGATGGTGCACTCATTGGGGGCGACTCTTCGCATGTTG
GCAGAACAGGGAGGAATTAG
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