mRNA_H-paniculata_contig58865.13508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58865.13508.1
Unique NamemRNA_H-paniculata_contig58865.13508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: W8BWJ0_CERCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Ceratitis capitata TaxID=7213 RepID=W8BWJ0_CERCA)

HSP 1 Score: 217 bits (553), Expect = 8.810e-61
Identity = 116/267 (43.45%), Postives = 159/267 (59.55%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRREN-VDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            +A+YGLKQSGR WNNTL++ L  +G +RS  ++CL+    ++G  +  +AVYVDDL+I    EN +   K  IS  F M D GSLS  LG+E++R    G  ++ Q +YI  +LK YG   CR V TPL+    +   D      N T+Y+ ++GSLMY +  +RPDI +AV   ++R  +P+ E  +  K I RYLS   +L I +  +  G  +  F DA+WA D  DRKS +GY F L G A SW S KQ +V  SSTE EYVA
Sbjct:  965 KAIYGLKQSGRAWNNTLDEVLQNMGFKRSKNEACLYVKQQQQG--SSYIAVYVDDLIIISPSENEICAIKRQISSKFEMHDSGSLSYFLGLEIQRDGKQGYVSLCQKTYIRNLLKTYGMQNCRAVATPLDPGFLVCCKDDSCVKVNVTQYQSLIGSLMYLAILSRPDILHAVSKLSQRNTNPHTEHENAAKHILRYLSGTINLSIVY--RKTGEPVVGFADADWANDQLDRKSYSGYTFFLAGSAFSWSSAKQSIVALSSTEAEYVA 1227          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: H3GB98_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB98_PHYRM)

HSP 1 Score: 206 bits (524), Expect = 1.790e-60
Identity = 106/272 (38.97%), Postives = 161/272 (59.19%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRRENVDEF-KHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGN-----STEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            R+LYGLKQS R WN T++DF++ +G ++  +D C++   D  G   + VA+YVDDLV+A   + + E  KH +S+ F M DLG L   LG+E++  R +G   + Q  ++  +L K+G  + + V TP +  +K++     G   +     +  YR +VG+LMY    TRPD+A AV   ++   DP    +   KR+ RYL   P  G+ F  + +  G+  + DA+WA D+E R+ST+GY F +NGG ISW S+KQ+ V  SSTE EY+A
Sbjct:   38 RSLYGLKQSPRMWNQTIDDFMLKLGFKKCESDHCVYLKRD--GQDMIFVALYVDDLVLASSNDELLELTKHALSKRFEMTDLGELEYFLGMEIKNTRDSGKVTVRQTKFLKSILTKFGMQDSKPVKTPQDPGLKLTKNMCEGGCQHEDTMKNVPYRSVVGALMYLMVATRPDLAAAVGVLSQFSADPCPTHWQALKRVLRYLQATPTHGLEFS-REDSLGMCGYSDADWAGDIESRRSTSGYAFMMNGGCISWRSKKQRTVALSSTEAEYMA 306          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A0S7JP25_9TELE (POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 RepID=A0A0S7JP25_9TELE)

HSP 1 Score: 204 bits (519), Expect = 2.040e-60
Identity = 109/267 (40.82%), Postives = 157/267 (58.80%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLV-IAGRRENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            +++YGLKQS R WN     F++ +G ++S++D C+     +      ++AVYVDDL+ I    E++DE K  + + ++MKDLG LS +LGI V + +      + Q  YI  +LKKYG D+   V TP +  VK+   D      + + Y+ MVGSL+YA+  TRPDIA AV   ++   +P     +  KRI RYL    +L + FD   N   L  F DA+WA D++DR STTG +F L+GGA+SW S+KQ  V  S+ E EYVA
Sbjct:    5 KSIYGLKQSPRCWNKEFTTFMMDLGFKQSSSDPCVFVRLSQE---LEIIAVYVDDLMLITESTESMDELKLTLQERYKMKDLGELSYILGISVIQDKEKNCICLHQKQYIETILKKYGMDKANPVATPADISVKLKKDDGVSNPVDPSTYQSMVGSLLYAAMTTRPDIAQAVSAVSKFNANPNTAHLTAVKRILRYLKGTVNLALKFDCAGN-KDLIGFSDADWAGDLDDRHSTTGNIFLLSGGAVSWLSKKQATVALSTAEAEYVA 267          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: H3GB17_PHYRM (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GB17_PHYRM)

HSP 1 Score: 204 bits (520), Expect = 3.990e-60
Identity = 111/267 (41.57%), Postives = 157/267 (58.80%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGR-RENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            +ALYG KQ+ R WN+ L   L G G  RS  D C++    +   +  ++ VYVDDL+I  R +  + E K  + + F +K+LG L   LGIE+ R R + T  ++Q +YI  + +K+G ++C+ V TP +   K+  P           YR +VG+LMY +T TRPDIA AV   A+  E   +  +   KRI +YL T  DLG+ F+G + G  L  + DA WA D++ R+STTGYVF LNG AISW S++Q  V  SSTE EY+A
Sbjct:   43 QALYGTKQAARQWNSKLNKHLEGQGFHRSAADPCVYVRRSDSKFS--IIIVYVDDLMIFSRTKAEIGEIKKALKREFSIKELGELKYCLGIEIHRNRDDKTIVMNQRAYIQRLAEKFGVEKCKAVHTPADSNSKLVKPAEDEVFVPRYPYRELVGALMYLATCTRPDIAQAVGEVAKFCERYNKSHWVAAKRILKYLKTTQDLGLVFNGGTKGE-LIGYADASWAGDLDTRRSTTGYVFFLNGSAISWKSKRQPTVATSSTEAEYMA 306          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: UPI001C35AD5A (Uncharacterized protein n=1 Tax=Manduca sexta TaxID=7130 RepID=UPI001C35AD5A)

HSP 1 Score: 204 bits (520), Expect = 3.990e-60
Identity = 107/268 (39.93%), Postives = 157/268 (58.58%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVI-AGRRENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRS-GNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            ++LYGLKQ+ R WN  L+  L  IGL++S  D C+++       T   VAVYVDD+++   R E  +  K+++S  F MKDLG L   LG+ + R R NG   + Q  YI ++L KYG   C+ V TP++ K K+S  D  G S  +S  Y+ ++GSL+Y S  TRPDI+Y+V+  ++    P  + +   KRI RYL    +  +T+  K +  G+  F DA+W  D   R+S TGY+F   G AI+W SR+Q  V  S+TE EY++
Sbjct:   36 KSLYGLKQASRQWNQKLDKTLKEIGLKQSLLDPCIYYKIRNEDIT--FVAVYVDDIILLTSRLETKNYIKNHLSSKFEMKDLGELKYCLGLHIHRDRNNGILCVDQKRYIEDILSKYGMSNCKTVRTPIDPKTKLSNDDENGDSIVDSHLYQELIGSLLYLSQSTRPDISYSVNTLSKFNSKPNMQHWMALKRILRYLKLTVNYTLTY--KKDDKGIHGFCDADWCSDEIQRRSCTGYIFIHQGAAITWNSRRQPTVALSTTEAEYMS 299          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A5D6YB57_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YB57_9STRA)

HSP 1 Score: 205 bits (521), Expect = 5.660e-60
Identity = 110/272 (40.44%), Postives = 158/272 (58.09%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIA-GRRENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNS-----TEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            RALYGLKQS R WN T+++F+  IG  +  TD C++   D++    + V +YVDDL++A    + +   K  +S+ F M DLG L   LG+EV R   +G  ++ Q  ++  VL K+G  +C+ V TP +  +K++     G   +        YR  VG++MY   GTRPD+A AV   ++   DP    +   KR+ RYL   P  GI F G  +G  L  + DA+WA D+E R+ST+GYVF LNGG I+W S+KQ+ V  SSTE EY+A
Sbjct:  141 RALYGLKQSPRMWNQTIDEFMRKIGFTKCETDHCVYVKRDDKA--MIFVVLYVDDLILACNDTDLLAATKRALSERFEMSDLGELKYCLGMEVERDDKSGDVSMRQTKFLHSVLAKFGMQDCKPVKTPQDPGLKLTKAMCEGGCKHDDTMQGVPYRSAVGAVMYLMVGTRPDLAAAVGVLSQFAADPCPTHWQALKRVLRYLQATPTHGIRFAGSGDGE-LIGYSDADWAGDIETRRSTSGYVFVLNGGCITWRSKKQRTVALSSTEAEYMA 409          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A7D9M6E1_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9M6E1_PARCT)

HSP 1 Score: 203 bits (516), Expect = 8.520e-60
Identity = 104/267 (38.95%), Postives = 166/267 (62.17%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRR-ENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            ++ YGLKQS R WN+ L++ L  IG  ++ +D C++   +E G    +VA++VDD+++AG+  E + + K +I++ F++KD+G L  +LG++V   + +G   I Q +Y   ++KKYG + C+ V TP++   K+ +        N  EY+  VGSL+Y S+ TRPDI +AV+  A+   +   E ++  KRIFRYL    + G+ +   +N   +  F DA+WA D+ DRKST+GY F++NG A+SW S+KQ  V  S+ E EYVA
Sbjct:   18 KSRYGLKQSSRCWNSVLDEHLKSIGFTQTESDPCIYVK-EEDG-DIFVVAIHVDDIILAGKTDEKIAKVKESIAERFQVKDMGELKYILGLQV--IQEDGKVWIGQPTYTASIIKKYGMENCKPVETPVDLSSKLVSAMEDSELFNKEEYQSAVGSLLYLSSATRPDITFAVNNVAKFSANFTNEHWTAVKRIFRYLKKTVNYGLLYSENANPDCVG-FSDADWAGDLNDRKSTSGYTFQINGAAVSWRSKKQTCVALSTAEAEYVA 279          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A6A3PPW4_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3PPW4_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.950e-59
Identity = 107/270 (39.63%), Postives = 162/270 (60.00%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRRENVDE-FKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHG---LERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            +ALYGL+QSGR WN+ L  +L   G +RS T+ CL++  +E   T + V VYVDD+++A   E   E    ++++ + +KD G L++ LG+EV +    G   I QG Y  E+L K+G++E   V  P+E   +++  +   ++  S  YR  VG LMY +T TRPD+A+A+   +R + +P  +     KR+ RY++   D GIT+  K        LE F D++WA D E RKSTTG+VF L GGA++W SR+Q ++  S+ E EYVA
Sbjct:  169 KALYGLRQSGREWNSELNQWLTDRGYQRSLTEPCLYYRFEEE--TIVYVLVYVDDILVATNNEQYKEKLFEDLNKAYGIKDQGLLTQYLGVEVEQ--TPGRITIRQGKYAREILAKFGYEEAHAVGNPMEVNARLAPIEEDEKAETSFPYREAVGMLMYLATSTRPDLAFALGQLSRFVANPLPKHVGALKRVLRYVAGTLDYGITYSRKQTEAKDVVLEGFCDSDWANDPEQRKSTTGFVFTLAGGALAWMSRRQSIIALSTAEAEYVA 434          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: B6V6Z8_DROME (Polyprotein n=1 Tax=Drosophila melanogaster TaxID=7227 RepID=B6V6Z8_DROME)

HSP 1 Score: 212 bits (540), Expect = 4.880e-59
Identity = 110/267 (41.20%), Postives = 159/267 (59.55%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGRREN-VDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLERFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYVA 798
            +A+YGLKQSGR WN+TL++ L  IG +RS  ++CL+    ++   +  +AVYVDDL+I    EN +   K  I+  F + D G L+  LG+E++R    G+ ++ Q  +I  +L KYG   CR   TPL+   K+   +      N T+++ ++GSLMY +  +RPDI + V   ++R  DP+ ED +  K + RYLS   DL IT+    +G  +  F DA+WA D+ DRKS +GY F L G A SW S KQ +V  SSTE EYVA
Sbjct:  956 KAIYGLKQSGRVWNDTLDEVLKSIGFKRSKNEACLYAKQQQQ--QHSYIAVYVDDLIIISYDENEISAIKRKIANKFDIHDGGQLNYFLGMEIQRESTRGSISLCQKQFIINLLDKYGMQNCRPAATPLDPGYKMGCRNENCVKVNITQFQSLIGSLMYLAVLSRPDILHTVSKLSQRNTDPHSEDETAAKHVLRYLSATVDLKITYS--KSGEQVMGFADADWANDLSDRKSYSGYAFFLGGSAFSWTSAKQSVVAMSSTEAEYVA 1218          
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU)

HSP 1 Score: 212 bits (540), Expect = 5.040e-59
Identity = 115/276 (41.67%), Postives = 160/276 (57.97%), Query Frame = 1
Query:    1 RALYGLKQSGRNWNNTLEDFLVGIGLERSTTDSCLHFTCDERG*TNLLVAVYVDDLVIAGR-RENVDEFKHNISQHFRMKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTPLEGKVKISAPDSRGRS--------GNSTEYRGMVGSLMYASTGTRPDIAYAVH*AARRMEDPYQEDFSTCKRIFRYLSTVPDLGITFDGKSNGHGLE--RFVDAEWAEDVEDRKSTTGYVFKLNGGAISWCSRKQQLVTWSSTEGEYV 795
            R+LYGLKQ+GR WN TL+  L G+G  R  +++CL+   D++G    LV VYVDDL++A   R  +DE K  ++  F+M+DLG  S +LGI +RR RP     +SQ  YI  VL +YG  +C+   TP+   VK SA D    +        G S  Y  ++GS+MYA  GTRPDIAY V    R   +P +  +   KR  RYL    D+ + FDG      ++   + DA+W+ D +  +ST+G+VF  N GAI W S++Q LV  SSTE EY+
Sbjct: 1128 RSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCFLV-VYVDDLLLAATSRAFMDEVKRKLTAQFKMRDLGEASYILGIAIRRDRPARAIYLSQRQYIDTVLDRYGMKDCKPQYTPMSASVKPSADDPEDNTTLHSITIEGRSVSYASVIGSMMYAMMGTRPDIAYLVGVLGRYSANPKRCHWEMAKRGLRYLKATRDMELRFDGSDVAGDMDFHGYSDADWSGDRDTSRSTSGFVFISNRGAIGWSSKRQSLVALSSTESEYI 1402          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58865.13508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W8BWJ0_CERCA8.810e-6143.45Retrovirus-related Pol polyprotein from transposon... [more]
H3GB98_PHYRM1.790e-6038.97Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0S7JP25_9TELE2.040e-6040.82POLX n=2 Tax=Poeciliopsis prolifica TaxID=188132 R... [more]
H3GB17_PHYRM3.990e-6041.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001C35AD5A3.990e-6039.93Uncharacterized protein n=1 Tax=Manduca sexta TaxI... [more]
A0A5D6YB57_9STRA5.660e-6040.44Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A7D9M6E1_PARCT8.520e-6038.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6A3PPW4_9STRA2.950e-5939.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
B6V6Z8_DROME4.880e-5941.20Polyprotein n=1 Tax=Drosophila melanogaster TaxID=... [more]
A0A1M2VT18_TRAPU5.040e-5941.67Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58865contigH-paniculata_contig58865:3..875 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score78.6
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog82508.K1VA87
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VGMM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons2
Model size798
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58865.13508.1prot_H-paniculata_contig58865.13508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58865 282..644 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.7434883-UTR-H-paniculata_contig58865:2..2811622930642.7434883-UTR-H-paniculata_contig58865:2..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58865 3..281 -
1691481385.94275-UTR-H-paniculata_contig58865:2..2811691481385.94275-UTR-H-paniculata_contig58865:2..281Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58865 3..281 -
1622930642.865434-UTR-H-paniculata_contig58865:644..8751622930642.865434-UTR-H-paniculata_contig58865:644..875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58865 645..875 -
1691481385.9748027-UTR-H-paniculata_contig58865:644..8751691481385.9748027-UTR-H-paniculata_contig58865:644..875Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58865 645..875 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.8083377-CDS-H-paniculata_contig58865:281..3871622930642.8083377-CDS-H-paniculata_contig58865:281..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58865 282..387 -
1691481385.9557488-CDS-H-paniculata_contig58865:281..3871691481385.9557488-CDS-H-paniculata_contig58865:281..387Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58865 282..387 -
1622930642.8439522-CDS-H-paniculata_contig58865:462..6441622930642.8439522-CDS-H-paniculata_contig58865:462..644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58865 463..644 -
1691481385.965321-CDS-H-paniculata_contig58865:462..6441691481385.965321-CDS-H-paniculata_contig58865:462..644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58865 463..644 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58865.13508.1

>prot_H-paniculata_contig58865.13508.1 ID=prot_H-paniculata_contig58865.13508.1|Name=mRNA_H-paniculata_contig58865.13508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=96bp
MKDLGSLSRVLGIEVRRYRPNGTAAISQGSYIGEVLKKYGFDECRGVPTP
LEGKVKISAPDSRGRSGNSTEYRGMVGSLMYASTGTRPDIAYAVH*
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mRNA from alignment at H-paniculata_contig58865:3..875-

Legend: UTRpolypeptideCDS
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>mRNA_H-paniculata_contig58865.13508.1 ID=mRNA_H-paniculata_contig58865.13508.1|Name=mRNA_H-paniculata_contig58865.13508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at H-paniculata_contig58865:3..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGAGCCCTGTACGGCCTCAAGCAGAGCGGCCGAAACTGGAATAACACTCT TGAGGATTTTCTTGTTGGGATAGGACTCGAACGTTCCACTACCGACTCAT GCTTGCACTTTACCTGCGACGAACGGGGATAGACAAACCTTCTGGTGGCC GTCTATGTCGACGACCTGGTCATTGCTGGTCGTCGTGAGAACGTAGACGA GTTCAAGCATAACATAAGTCAGCATTTTAGGATGAAAGACTTGGGCTCTC TCTCGCGCGTGTTGGGAATAGAAGTACGACGTTACCGCCCTAATGGTACC GCAGCCATCTCGCAGGGGAGCTACATCGGCGAGGTACTAAAAAAATACGG TTTTGACGAGTGTCGAGGAGTACCCACCCCTCTAGAGGGAAAAGTGAAGA TTTCGGCACCCGAGTCGGCCGACAAGCCCTCCGAACCGAAGTCACTTAGG GTTGTACTGTCGGACACAGGCGCAGGAGTACAAGAAAGCAGCAGAGGGAG AAGTGGTAATTCGACTGAATACAGAGGCATGGTAGGATCACTCATGTACG CCTCGACCGGAACCAGACCTGATATAGCATACGCGGTACACTAAGCAGCA CGTCGTATGGAGGACCCATATCAAGAAGACTTCAGTACATGCAAGCGCAT TTTTCGTTATCTCAGTACTGTGCCTGACCTCGGCATTACGTTCGACGGTA AGAGTAATGGTCACGGTCTGGAACGATTCGTTGATGCCGAGTGGGCGGAA GATGTCGAGGACCGAAAGTCCACAACAGGATACGTTTTCAAACTGAACGG TGGTGCAATAAGTTGGTGCTCTAGGAAGCAACAGTTAGTCACGTGGTCCA GTACAGAGGGAGAGTACGTTGCT
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Coding sequence (CDS) from alignment at H-paniculata_contig58865:3..875-

>mRNA_H-paniculata_contig58865.13508.1 ID=mRNA_H-paniculata_contig58865.13508.1|Name=mRNA_H-paniculata_contig58865.13508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at H-paniculata_contig58865:3..875- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAAGACTTGGGCTCTCTCTCGCGCGTGTTGGGAATAGAAGTACGACG
TTACCGCCCTAATGGTACCGCAGCCATCTCGCAGGGGAGCTACATCGGCG
AGGTACTAAAAAAATACGGTTTTGACGAGTGTCGAGGAGTACCCACCCCT
CTAGAGGGAAAAGTGAAGATTTCGGCACCCGAATGAAAGACTTGGGCTCT
CTCTCGCGCGTGTTGGGAATAGAAGTACGACGTTACCGCCCTAATGGTAC
CGCAGCCATCTCGCAGGGGAGCTACATCGGCGAGGTACTAAAAAAATACG
GTTTTGACGAGTGTCGAGGAGTACCCACCCCTCTAGAGGGAAAAGTGAAG
ATTTCGGCACCCGACAGCAGAGGGAGAAGTGGTAATTCGACTGAATACAG
AGGCATGGTAGGATCACTCATGTACGCCTCGACCGGAACCAGACCTGATA
TAGCATACGCGGTACACTAACAGCAGAGGGAGAAGTGGTAATTCGACTGA
ATACAGAGGCATGGTAGGATCACTCATGTACGCCTCGACCGGAACCAGAC
CTGATATAGCATACGCGGTACACTAA
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