mRNA_H-paniculata_contig5885.13505.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5885.13505.1
Unique NamemRNA_H-paniculata_contig5885.13505.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5885.13505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5885contigH-paniculata_contig5885:346..2316 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1973
Cds size1971
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.4727716-CDS-H-paniculata_contig5885:345..23161622930642.4727716-CDS-H-paniculata_contig5885:345..2316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5885 346..2316 +
1691481385.8105347-CDS-H-paniculata_contig5885:345..23161691481385.8105347-CDS-H-paniculata_contig5885:345..2316Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5885 346..2316 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5885.13505.1prot_H-paniculata_contig5885.13505.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5885 346..2316 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5885.13505.1

>prot_H-paniculata_contig5885.13505.1 ID=prot_H-paniculata_contig5885.13505.1|Name=mRNA_H-paniculata_contig5885.13505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=657bp
MQRRHVQTDRGNRSPEFSQADSESGGILIDRSRRRSSGGLRRHDPAVGGR
SPQDGGGSEQDPFSPSADFGMADREGAAGGLDPETSLTFVHFTAKAGDGF
APAEKESAAVGLSKSINNKSSEKEKIHDGDEKRDADGGREPRRSSTSGIV
PPYLPSCSGGCASPYDIEQPPRREGNSIGGVMAMAMAVEFAAAAAGERLW
DEAAERQHQQEPSSSATTDDRQMRPAVSTTTVTNVAAVPASLGVAPYPSF
FRTSGTEEDKELGSPPRPAERANGGNKDFEGGECTNTRDDHGNNSGSVCV
SQRVGERPSASNRWLAAAASVVTHPREGRVASSATVAPCCAAPTTVAVVG
GMERKDKKLGQEGALEFLHNSGGAGDDEEETKDARGGGGGSDCSSEKSAE
RSSNTDSPAKAVSLPYFSRGGAVVEDFRSRSRSHRHGGGEVVDWSWKRYG
GDGGDGDGGDGDDGDGDDAGFDGDTSAQTEEEQERDERGALSEDSVGSAR
AGRKRENISAVYPRKGQGEGDVARNFVNGDEDFRSAAAAAAVAATGEAST
TPIPVALATPVPLSVQHSRPQAPFSESQGRQHVLSASFSATQGGSGAEPE
PGRRPRTTSAVTALFGSSRTTTFRSFDNHTGGIPGRVQMIAAGSGAMGGF
SGGVAVG
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mRNA from alignment at H-paniculata_contig5885:346..2316+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5885.13505.1 ID=mRNA_H-paniculata_contig5885.13505.1|Name=mRNA_H-paniculata_contig5885.13505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1971bp|location=Sequence derived from alignment at H-paniculata_contig5885:346..2316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGCCGACACGTTCAGACAGATAGGGGCAACAGAAGCCCCGAATT
TTCCCAGGCCGACTCAGAATCCGGTGGTATCTTGATCGACCGCAGCCGTC
GAAGGTCCTCTGGGGGGTTGAGGCGGCACGATCCTGCCGTGGGTGGTCGT
TCTCCACAAGATGGCGGAGGCAGCGAACAAGATCCGTTCTCGCCGAGTGC
GGATTTTGGGATGGCGGATCGAGAAGGAGCGGCTGGGGGGTTGGATCCGG
AAACAAGCCTTACGTTTGTGCACTTCACGGCGAAAGCGGGGGACGGATTC
GCACCGGCGGAGAAGGAATCCGCGGCCGTGGGGTTGAGCAAGAGTATTAA
CAACAAATCGTCGGAGAAGGAGAAAATCCATGACGGCGATGAGAAAAGGG
ATGCCGATGGCGGCAGAGAGCCCCGTCGTAGTAGTACGAGCGGCATCGTT
CCTCCATACTTGCCTTCGTGCTCTGGTGGTTGTGCGTCTCCATACGACAT
CGAGCAGCCACCAAGGCGAGAGGGAAACAGCATCGGGGGGGTGATGGCGA
TGGCGATGGCGGTCGAGTTTGCGGCGGCGGCGGCGGGGGAGCGATTGTGG
GACGAAGCAGCCGAGCGACAACATCAGCAAGAACCAAGCTCCTCCGCGAC
AACTGATGACCGACAGATGCGCCCAGCAGTATCAACGACAACAGTGACGA
ACGTTGCAGCGGTTCCCGCGTCCTTAGGTGTTGCTCCATATCCGTCTTTT
TTTCGAACCAGTGGTACGGAAGAAGACAAAGAACTAGGTTCCCCGCCCCG
TCCAGCCGAGCGGGCTAACGGAGGGAATAAGGATTTTGAGGGAGGCGAGT
GTACAAACACAAGGGATGATCACGGCAATAACAGCGGTAGTGTTTGTGTA
AGTCAGAGGGTTGGTGAGCGGCCGAGCGCTAGTAACAGATGGCTCGCGGC
CGCCGCAAGCGTTGTAACGCATCCAAGAGAGGGGCGGGTGGCGTCGAGTG
CGACCGTTGCTCCTTGTTGTGCTGCCCCTACTACTGTGGCCGTTGTAGGG
GGGATGGAGCGAAAAGACAAGAAGCTCGGGCAAGAGGGCGCGTTGGAGTT
TTTGCACAACAGCGGCGGCGCCGGCGACGACGAAGAAGAAACTAAGGACG
CCCGGGGCGGTGGCGGTGGCAGCGACTGTTCCTCGGAAAAATCTGCGGAA
CGTTCCTCTAACACCGACAGTCCCGCGAAAGCAGTTTCTTTGCCCTATTT
TTCTAGGGGTGGGGCAGTAGTCGAGGATTTCCGCAGCCGCAGCCGCAGCC
ACCGTCATGGTGGGGGTGAAGTGGTGGATTGGTCTTGGAAACGCTACGGT
GGTGATGGTGGTGATGGTGATGGTGGTGATGGTGATGATGGTGATGGTGA
TGATGCGGGATTTGATGGCGATACGAGTGCTCAGACGGAGGAGGAGCAGG
AGCGAGATGAACGAGGCGCGCTTAGTGAAGACAGTGTGGGATCAGCGAGG
GCGGGGAGAAAGAGGGAAAATATATCAGCAGTTTATCCACGGAAGGGGCA
GGGAGAGGGAGACGTTGCGCGGAATTTTGTCAACGGCGATGAAGATTTTC
GTTCGGCGGCGGCGGCGGCGGCGGTGGCGGCAACGGGCGAAGCATCTACA
ACTCCCATCCCCGTAGCTCTAGCAACACCGGTGCCGCTGTCTGTACAGCA
CTCACGACCGCAGGCACCTTTTTCGGAGTCTCAGGGACGACAACATGTCC
TTTCGGCGAGTTTTTCGGCAACACAAGGAGGCTCGGGGGCAGAGCCAGAG
CCAGGACGTAGGCCGAGGACGACCTCAGCCGTGACAGCTCTGTTCGGGTC
GTCAAGAACAACGACATTCCGTTCTTTTGACAACCATACTGGAGGCATTC
CGGGAAGGGTGCAAATGATTGCAGCGGGCAGCGGCGCGATGGGTGGGTTT
AGCGGGGGCGTAGCGGTCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5885:346..2316+

>mRNA_H-paniculata_contig5885.13505.1 ID=mRNA_H-paniculata_contig5885.13505.1|Name=mRNA_H-paniculata_contig5885.13505.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3942bp|location=Sequence derived from alignment at H-paniculata_contig5885:346..2316+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGCGCCGACACGTTCAGACAGATAGGGGCAACAGAAGCCCCGAATT
TTCCCAGGCCGACTCAGAATCCGGTGGTATCTTGATCGACCGCAGCCGTC
GAAGGTCCTCTGGGGGGTTGAGGCGGCACGATCCTGCCGTGGGTGGTCGT
TCTCCACAAGATGGCGGAGGCAGCGAACAAGATCCGTTCTCGCCGAGTGC
GGATTTTGGGATGGCGGATCGAGAAGGAGCGGCTGGGGGGTTGGATCCGG
AAACAAGCCTTACGTTTGTGCACTTCACGGCGAAAGCGGGGGACGGATTC
GCACCGGCGGAGAAGGAATCCGCGGCCGTGGGGTTGAGCAAGAGTATTAA
CAACAAATCGTCGGAGAAGGAGAAAATCCATGACGGCGATGAGAAAAGGG
ATGCCGATGGCGGCAGAGAGCCCCGTCGTAGTAGTACGAGCGGCATCGTT
CCTCCATACTTGCCTTCGTGCTCTGGTGGTTGTGCGTCTCCATACGACAT
CGAGCAGCCACCAAGGCGAGAGGGAAACAGCATCGGGGGGGTGATGGCGA
TGGCGATGGCGGTCGAGTTTGCGGCGGCGGCGGCGGGGGAGCGATTGTGG
GACGAAGCAGCCGAGCGACAACATCAGCAAGAACCAAGCTCCTCCGCGAC
AACTGATGACCGACAGATGCGCCCAGCAGTATCAACGACAACAGTGACGA
ACGTTGCAGCGGTTCCCGCGTCCTTAGGTGTTGCTCCATATCCGTCTTTT
TTTCGAACCAGTGGTACGGAAGAAGACAAAGAACTAGGTTCCCCGCCCCG
TCCAGCCGAGCGGGCTAACGGAGGGAATAAGGATTTTGAGGGAGGCGAGT
GTACAAACACAAGGGATGATCACGGCAATAACAGCGGTAGTGTTTGTGTA
AGTCAGAGGGTTGGTGAGCGGCCGAGCGCTAGTAACAGATGGCTCGCGGC
CGCCGCAAGCGTTGTAACGCATCCAAGAGAGGGGCGGGTGGCGTCGAGTG
CGACCGTTGCTCCTTGTTGTGCTGCCCCTACTACTGTGGCCGTTGTAGGG
GGGATGGAGCGAAAAGACAAGAAGCTCGGGCAAGAGGGCGCGTTGGAGTT
TTTGCACAACAGCGGCGGCGCCGGCGACGACGAAGAAGAAACTAAGGACG
CCCGGGGCGGTGGCGGTGGCAGCGACTGTTCCTCGGAAAAATCTGCGGAA
CGTTCCTCTAACACCGACAGTCCCGCGAAAGCAGTTTCTTTGCCCTATTT
TTCTAGGGGTGGGGCAGTAGTCGAGGATTTCCGCAGCCGCAGCCGCAGCC
ACCGTCATGGTGGGGGTGAAGTGGTGGATTGGTCTTGGAAACGCTACGGT
GGTGATGGTGGTGATGGTGATGGTGGTGATGGTGATGATGGTGATGGTGA
TGATGCGGGATTTGATGGCGATACGAGTGCTCAGACGGAGGAGGAGCAGG
AGCGAGATGAACGAGGCGCGCTTAGTGAAGACAGTGTGGGATCAGCGAGG
GCGGGGAGAAAGAGGGAAAATATATCAGCAGTTTATCCACGGAAGGGGCA
GGGAGAGGGAGACGTTGCGCGGAATTTTGTCAACGGCGATGAAGATTTTC
GTTCGGCGGCGGCGGCGGCGGCGGTGGCGGCAACGGGCGAAGCATCTACA
ACTCCCATCCCCGTAGCTCTAGCAACACCGGTGCCGCTGTCTGTACAGCA
CTCACGACCGCAGGCACCTTTTTCGGAGTCTCAGGGACGACAACATGTCC
TTTCGGCGAGTTTTTCGGCAACACAAGGAGGCTCGGGGGCAGAGCCAGAG
CCAGGACGTAGGCCGAGGACGACCTCAGCCGTGACAGCTCTGTTCGGGTC
GTCAAGAACAACGACATTCCGTTCTTTTGACAACCATACTGGAGGCATTC
CGGGAAGGGTGCAAATGATTGCAGCGGGCAGCGGCGCGATGGGTGGGTTT
AGCGGGGGCGTAGCGGTCGGGATGCAGCGCCGACACGTTCAGACAGATAG
GGGCAACAGAAGCCCCGAATTTTCCCAGGCCGACTCAGAATCCGGTGGTA
TCTTGATCGACCGCAGCCGTCGAAGGTCCTCTGGGGGGTTGAGGCGGCAC
GATCCTGCCGTGGGTGGTCGTTCTCCACAAGATGGCGGAGGCAGCGAACA
AGATCCGTTCTCGCCGAGTGCGGATTTTGGGATGGCGGATCGAGAAGGAG
CGGCTGGGGGGTTGGATCCGGAAACAAGCCTTACGTTTGTGCACTTCACG
GCGAAAGCGGGGGACGGATTCGCACCGGCGGAGAAGGAATCCGCGGCCGT
GGGGTTGAGCAAGAGTATTAACAACAAATCGTCGGAGAAGGAGAAAATCC
ATGACGGCGATGAGAAAAGGGATGCCGATGGCGGCAGAGAGCCCCGTCGT
AGTAGTACGAGCGGCATCGTTCCTCCATACTTGCCTTCGTGCTCTGGTGG
TTGTGCGTCTCCATACGACATCGAGCAGCCACCAAGGCGAGAGGGAAACA
GCATCGGGGGGGTGATGGCGATGGCGATGGCGGTCGAGTTTGCGGCGGCG
GCGGCGGGGGAGCGATTGTGGGACGAAGCAGCCGAGCGACAACATCAGCA
AGAACCAAGCTCCTCCGCGACAACTGATGACCGACAGATGCGCCCAGCAG
TATCAACGACAACAGTGACGAACGTTGCAGCGGTTCCCGCGTCCTTAGGT
GTTGCTCCATATCCGTCTTTTTTTCGAACCAGTGGTACGGAAGAAGACAA
AGAACTAGGTTCCCCGCCCCGTCCAGCCGAGCGGGCTAACGGAGGGAATA
AGGATTTTGAGGGAGGCGAGTGTACAAACACAAGGGATGATCACGGCAAT
AACAGCGGTAGTGTTTGTGTAAGTCAGAGGGTTGGTGAGCGGCCGAGCGC
TAGTAACAGATGGCTCGCGGCCGCCGCAAGCGTTGTAACGCATCCAAGAG
AGGGGCGGGTGGCGTCGAGTGCGACCGTTGCTCCTTGTTGTGCTGCCCCT
ACTACTGTGGCCGTTGTAGGGGGGATGGAGCGAAAAGACAAGAAGCTCGG
GCAAGAGGGCGCGTTGGAGTTTTTGCACAACAGCGGCGGCGCCGGCGACG
ACGAAGAAGAAACTAAGGACGCCCGGGGCGGTGGCGGTGGCAGCGACTGT
TCCTCGGAAAAATCTGCGGAACGTTCCTCTAACACCGACAGTCCCGCGAA
AGCAGTTTCTTTGCCCTATTTTTCTAGGGGTGGGGCAGTAGTCGAGGATT
TCCGCAGCCGCAGCCGCAGCCACCGTCATGGTGGGGGTGAAGTGGTGGAT
TGGTCTTGGAAACGCTACGGTGGTGATGGTGGTGATGGTGATGGTGGTGA
TGGTGATGATGGTGATGGTGATGATGCGGGATTTGATGGCGATACGAGTG
CTCAGACGGAGGAGGAGCAGGAGCGAGATGAACGAGGCGCGCTTAGTGAA
GACAGTGTGGGATCAGCGAGGGCGGGGAGAAAGAGGGAAAATATATCAGC
AGTTTATCCACGGAAGGGGCAGGGAGAGGGAGACGTTGCGCGGAATTTTG
TCAACGGCGATGAAGATTTTCGTTCGGCGGCGGCGGCGGCGGCGGTGGCG
GCAACGGGCGAAGCATCTACAACTCCCATCCCCGTAGCTCTAGCAACACC
GGTGCCGCTGTCTGTACAGCACTCACGACCGCAGGCACCTTTTTCGGAGT
CTCAGGGACGACAACATGTCCTTTCGGCGAGTTTTTCGGCAACACAAGGA
GGCTCGGGGGCAGAGCCAGAGCCAGGACGTAGGCCGAGGACGACCTCAGC
CGTGACAGCTCTGTTCGGGTCGTCAAGAACAACGACATTCCGTTCTTTTG
ACAACCATACTGGAGGCATTCCGGGAAGGGTGCAAATGATTGCAGCGGGC
AGCGGCGCGATGGGTGGGTTTAGCGGGGGCGTAGCGGTCGGG
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