mRNA_H-paniculata_contig58825.13503.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58825.13503.1
Unique NamemRNA_H-paniculata_contig58825.13503.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 5.500e-8
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 GATAHMTPSNELMFDYESYS-NLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
            GATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S+  + ++G++V  ++   VI   + +    +K+ K
Sbjct:  268 GATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVIWYKSTAIASAKKVGK 370          
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 2.630e-7
Identity = 34/106 (32.08%), Postives = 58/106 (54.72%), Query Frame = 1
Query:    1 GATAHMTPSNELMFDYESY-SNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
            GATAHMTP  E +FDY++  +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S+  + ++GL V  +    +I    ++    +K+ K
Sbjct:  165 GATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWNKKQATASGKKVGK 267          
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.350e-7
Identity = 33/106 (31.13%), Postives = 61/106 (57.55%), Query Frame = 1
Query:    1 GATAHMTPSNELMFDYESYS-NLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
            GATAHMTP  + +F+Y + S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S+  + ++G++V  +    VI   +++    +KI K
Sbjct:  250 GATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLSVGKLAERGMSVEFQRNSCVIWDKSKAVASGKKIGK 352          
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A2P4XNP3_9STRA (Integrase catalytic core protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XNP3_9STRA)

HSP 1 Score: 52.8 bits (125), Expect = 1.160e-5
Identity = 30/81 (37.04%), Postives = 49/81 (60.49%), Query Frame = 1
Query:    1 GATAHMTPSNELMFDYE-SYSNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLT 240
            GAT+HMTP  E +FD E + S++ VT+A+G+ L + G G + +   +   I    +  V ++PGLD  L S+  + ++GLT
Sbjct:  160 GATSHMTPFREDLFDLEGTVSSIEVTIADGKKLRVAGQGTVRLTSLNGKHI---KMMEVLYIPGLDRRLLSVGKLAERGLT 237          
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: A0A425C8P2_9STRA (gag_pre-integrs domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425C8P2_9STRA)

HSP 1 Score: 51.6 bits (122), Expect = 2.670e-5
Identity = 32/106 (30.19%), Postives = 53/106 (50.00%), Query Frame = 1
Query:    1 GATAHMTPSNELMFDYESY-SNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK 315
            GATAHMTP  E +FDY++  +++ VT+A+G+ +                        RV H+PGLD  L S+  + ++GL V  +    +I   N++    +K+ K
Sbjct:   35 GATAHMTPHREYLFDYKNLMTSIEVTIADGKKI------------------------RVLHIPGLDRRLLSVGKLAERGLNVEFERTSCIIWKKNQAAASGKKVGK 116          
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.970e-5
Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 1
Query:    1 GATAHMTPSNELMFDYESYSNLFVTVANGETLPIEGYGK-MLVWMKDRSEIHKFSLSRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALP 279
            GA+AHMT        +E     ++T+A+G+   I G G  +L  +    E+ +  +S V +VPGL TNL S++ + ++ L V    +G  I  P
Sbjct:  280 GASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDP 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58825.13503.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A329SN38_9STRA5.500e-832.08Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA2.630e-732.08CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A225UGS0_9STRA3.350e-731.13Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A2P4XNP3_9STRA1.160e-537.04Integrase catalytic core protein n=1 Tax=Phytophth... [more]
A0A425C8P2_9STRA2.670e-530.19gag_pre-integrs domain-containing protein n=1 Tax=... [more]
Q967L5_AEDAE2.970e-531.91Uncharacterized protein n=1 Tax=Aedes aegypti TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58825contigH-paniculata_contig58825:146..472 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size327
Cds size312
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.01398-CDS-H-paniculata_contig58825:145..4571622930642.01398-CDS-H-paniculata_contig58825:145..457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58825 146..457 -
1691481385.6692452-CDS-H-paniculata_contig58825:145..4571691481385.6692452-CDS-H-paniculata_contig58825:145..457Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58825 146..457 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930642.0304341-UTR-H-paniculata_contig58825:457..4721622930642.0304341-UTR-H-paniculata_contig58825:457..472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58825 458..472 -
1691481385.6783118-UTR-H-paniculata_contig58825:457..4721691481385.6783118-UTR-H-paniculata_contig58825:457..472Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58825 458..472 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58825.13503.1prot_H-paniculata_contig58825.13503.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58825 146..457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58825.13503.1

>prot_H-paniculata_contig58825.13503.1 ID=prot_H-paniculata_contig58825.13503.1|Name=mRNA_H-paniculata_contig58825.13503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=104bp
MTPSNELMFDYESYSNLFVTVANGETLPIEGYGKMLVWMKDRSEIHKFSL
SRVAHVPGLDTNLFSLQIVVKQGLTVCLKEEGAVIALPNRSDLLCRKIEK
HDFL
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mRNA from alignment at H-paniculata_contig58825:146..472-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58825.13503.1 ID=mRNA_H-paniculata_contig58825.13503.1|Name=mRNA_H-paniculata_contig58825.13503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig58825:146..472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCTACGGCCCACATGACTCCGTCTAACGAATTAATGTTTGATTACGA ATCCTACAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGA TTGAGGGATATGGTAAGATGTTGGTGTGGATGAAGGATCGGAGCGAGATA CACAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAA TTTGTTTTCCCTACAGATTGTAGTGAAGCAGGGACTTACTGTCTGTTTGA AGGAGGAGGGTGCAGTAATTGCACTACCTAATCGGAGCGATCTTTTGTGC AGAAAAATCGAAAAACATGACTTTTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig58825:146..472-

>mRNA_H-paniculata_contig58825.13503.1 ID=mRNA_H-paniculata_contig58825.13503.1|Name=mRNA_H-paniculata_contig58825.13503.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at H-paniculata_contig58825:146..472- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCCGTCTAACGAATTAATGTTTGATTACGAATCCTACAGTAATTT
GTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTA
AGATGTTGGTGTGGATGAAGGATCGGAGCGAGATACACAAATTCAGCTTG
AGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTTGTTTTCCCTACA
GATTGTAGTGAAGCAGGGACTTACTGTCTGTTTGAAGGAGGAGGGTGCAG
TAATTGCACTACCTAATCGGAGCGATCTTTTGTGCAGAAAAATCGAAAAA
CATGACTTTTTGATGACTCCGTCTAACGAATTAATGTTTGATTACGAATC
CTACAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTG
AGGGATATGGTAAGATGTTGGTGTGGATGAAGGATCGGAGCGAGATACAC
AAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGACACAAATTT
GTTTTCCCTACAGATTGTAGTGAAGCAGGGACTTACTGTCTGTTTGAAGG
AGGAGGGTGCAGTAATTGCACTACCTAATCGGAGCGATCTTTTGTGCAGA
AAAATCGAAAAACATGACTTTTTG
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