mRNA_H-paniculata_contig5882.13502.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5882.13502.1
Unique NamemRNA_H-paniculata_contig5882.13502.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5882.13502.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5882contigH-paniculata_contig5882:5241..8867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons3
Model size505
Cds size504
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5882.13502.1prot_H-paniculata_contig5882.13502.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5882 5241..8866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.9437375-CDS-H-paniculata_contig5882:5240..55911622930641.9437375-CDS-H-paniculata_contig5882:5240..5591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 5241..5591 +
1691481385.643483-CDS-H-paniculata_contig5882:5240..55911691481385.643483-CDS-H-paniculata_contig5882:5240..5591Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 5241..5591 +
1622930641.9570594-CDS-H-paniculata_contig5882:7647..77341622930641.9570594-CDS-H-paniculata_contig5882:7647..7734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 7648..7734 +
1691481385.6530488-CDS-H-paniculata_contig5882:7647..77341691481385.6530488-CDS-H-paniculata_contig5882:7647..7734Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 7648..7734 +
1622930641.97028-CDS-H-paniculata_contig5882:8800..88661622930641.97028-CDS-H-paniculata_contig5882:8800..8866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 8801..8866 +
1691481385.6609178-CDS-H-paniculata_contig5882:8800..88661691481385.6609178-CDS-H-paniculata_contig5882:8800..8866Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 8801..8866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5882.13502.1

>prot_H-paniculata_contig5882.13502.1 ID=prot_H-paniculata_contig5882.13502.1|Name=mRNA_H-paniculata_contig5882.13502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
KSNFFDRRLLLPFPSLSSHHIINDQKDVVDDKLKLVIRNFPVMRLLLVGF
GAFCCLLHVAGFSGGVGCPLYISARIRTGGARSRSHVFDVNNGRRIAVFD
AAAVPHRRCSMMSARHAAADLEIVEAIAQGNGGAAPTLTGVRSWTEEFEQ
DQYHRRSVMVDDGKLRKL
back to top

mRNA from alignment at H-paniculata_contig5882:5241..8867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5882.13502.1 ID=mRNA_H-paniculata_contig5882.13502.1|Name=mRNA_H-paniculata_contig5882.13502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3627bp|location=Sequence derived from alignment at H-paniculata_contig5882:5241..8867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGCAACTTTTTTGATCGACGACTCCTACTTCCCTTTCCTTCCCTTTC
ATCCCACCACATAATCAATGATCAGAAGGACGTTGTGGACGACAAGTTGA
AGTTGGTTATCAGGAATTTTCCGGTCATGAGACTGCTGCTAGTCGGTTTT
GGAGCATTCTGCTGCCTGTTACATGTTGCAGGATTTAGCGGGGGGGTGGG
CTGTCCGTTGTACATTTCTGCGAGGATCAGGACTGGCGGCGCTAGATCGC
GGTCTCATGTGTTTGATGTAAATAATGGTCGGAGAATCGCGGTGTTTGAT
GCGGCAGCTGTCCCCCACCGGCGGTGCTCAATGATGAGTGCTCGACATGC
GGTATGTACCATGGTATGAACAGCGAGTATGGTCCGTAGTTCAGTAAAAT
CGGGGTCTCACTTTAAGACCGATAGGTTTCAGACTATGAAATGGGCCTTA
AAGTAGGATCCCGACTAATAGTTGTTTCGTCCACTGTTGATATCAAATTG
AACAAGTTGTCTTGAGCACTGCTCGCTGTAAATACCTGGCGTGTTTCAAG
GCGGGTGAGCGATGGCAGCACGTACTGTGTACCCACTACTTGATTGTTTC
CCGTGAGGCACACAAGAAGCGAATTAATGCTGGTTTTGTTCTGCTATCGT
TATCGTAGTTACTAGTCATTTGCCATCGGCGAGGCCTGAACTCATCATTA
AATACGATGTATCCTGAGAAGGAAAAAAACGGATTAAAGTATACAATAGT
ATGGTTCATCGCGAAACCAAGATCCTACAGCAATAAATGGCATCCTTATC
CTCCAACAAATACGTGAAAGCTACAATTTATTCATGAAAAATATATATTC
ACATCCATCAACAAAGATGTCTTGAATGTCAATGAAGAGTGGATGAGAAT
TTACATGTGGCGGAAAACAAATAAAAACGAAAAACGGTAGCCACGTAGAA
CGGCTACCAAGCACCAAGAGAGCCCCTAACGCCGAACAAGCACACAAAAC
TGAACAAGTTTCGACAGATCAAACTACACTACACACGTTATAGGGATATA
TCGCGTGTAGAACTATAGACGATCTTCAGGATACAACCTACTTCCAATAT
AACCCAGAGTCCCCATCTCAAAGTTGGGTCCCCATTTCACCAATATGCTG
TTAGACCTATTTACTTGTACTACAGTATTATGTACCTCGCATGGCCATAT
GGTTATAACAGCACGCACTGCAGCTGCTGTGCCCACTTAAAGGTCGATCC
GCCGTTCGTCATGTCCTGGAAATCATTCGACCATAACAGGGACCGACCGG
CCATAACCCTTGCAAACCAGGAAGTCTACATTACGACAAATTTCGACGCG
CGGTTTTTGATAGTCCCGCGACGAAAAAAAGGAGGGGGAGGAGGATGGTT
TGTGGCAGGGGAGGATGCCGAATTTCGACGGACAGAATTACTTTGGCCGG
GTTGAGATCAAACCCGTACGTCGACAAGCAGTGGCTGTCCGCTGGACAGC
TTAAGCAGCAAGATGCCGTAGATTTGCGCCCGACGACGAAAGAAACAGAC
AGTACGGCTGCATGCAGTACAGTTCATGTGCAACTGCATGCAGCACCATT
TCTGCGGCATACAGTGACAACAGAGTGAGAGAGCTGGTAGGCATCGGCAT
ACCCCAAGAATTCCGTAGCAAACGATAGCGACTGCGTGTGTGGCGTCCTG
TTATGAGTAAAGTACCCACAGGTGCAGCAACAGGCGGTCTGCCACAGTCG
CGGCAGTCGGGACACCACACAACATGACTGATATCTATTGAATCGTTGGT
AATTAGGCGTTGGGGTTCCTGGATTAAAGTTATTTCTTCCCATCAGTCTT
TTTTTTCATGTGTAAGGGGGTTATAGCGCTCGACCATGAAGTGAAATCTC
GATAGTACAGTACAATAAAGAGTAGGTTCCCTCGAGAAGCTCTCGGACTC
AAGACGAGCTGGTCATGCACAAGGACTGGGTGACACACGATTAAGCAATT
CAAACCGTAATCACGAGCGCGTGATCTCCCCAGGGGAATTCGCTCCTTTT
GCTCCAACGCTAGACGTGTGTCGTTGCGATTATCGAAGTACCATACTTAT
ATATCCGAAGCACATATTTCGTCGTTTCTTATTGACATCTGTTTTTATGA
TCGAATCATGCATATTTGGATACCTTTTGTGCAATCTCGGATCTACGGGG
TTTTAGCTTTATCAAGCTTTACCAGCTGGTTTCATAGCGTCTGTCTGCTG
CAAGTATAACTGCTACTTTTTGGAAGTACATCGAGTAGATTCATGTTGCA
TCCTAGACACGGAACCCGGTGCTATCCTAGGGCGTTATTACACTCACCCT
CTTCTTCTGTGTATGAGCCCCAGAACGCTGGCTTTTGCAATCCACCGCCG
TCCCTAGGCAGCAGATCTAGAAATCGTGGAAGCCATCGCGCAAGGCAACG
GTGGCGCTGCTCCTACCCTCACCGGGGTGCGTTCCTGGACAGAGGTGAGA
ACAAACGCGACGAGCCGAAACCAATACTGTGCATTTATCTTGGGAATGCT
TCTGGAGTCAGGCATTGTATGCTTGCTCTGCTTTTTGTATTTTGTTGTTC
TTTGTATATATTACGTAGCCTGCACTTTGGAGGGGAAGGGGGGGGGGTGA
GCCCAGGTGCGGACGAACAGCTGTGGATGCATAAATGAAGTACAACTTCA
TTGTTTGGGATTGCAAGTTCGTCAGCCGACGTGTGTTTCTCTAGTACAAC
AAGATGATGTCGTTGATACGAGAATTTCTGGACCTAGACGCAAGTCACTA
TCAATAGAACCCGACACGATATTAGAGATCGTTCGTATGCAGCAAGTCTG
TAGTTTGGCATGGTATGGTCGGGCGGTCACATCCTAGCGCCATACCACGT
GTAACCGTTACTTCTCCGCGGCCCAACCACATCTCGATGGCGGAACAATA
AGTTCGCTCTCCCTTCCAGACTCTCTTCTAAAACCTCTCCTTAGCGCAAC
TTTGTCCTATCTGAGGGTTGAATCCTTCCTTCGCCGTCGCCAGAGACCGT
GCGAGTGGTTGCCGTAGAGATGGCCCCCTGAGAATTAGTTTTCAGGCATG
TGGACGTTAACCTTGGTTCAACGTCAACCTACGTTGATCGCACGCAACGG
CTACCCTACAACCCGGTTACGGCCAATTCTTTTATAGAGCCTTCTCGCAC
GGCATGCATGAGCTTTGATGGGTGCTCCAGGGAAGGGTTGTTCCCATATT
CTATAAAACCCTTTTATTTTTCTCTTTTCCACCGTCAAGCCTAGTAGCCA
ATGCAATACACAATATGCGATGCGCCCCGCTGAGGATTCATATCACACAA
ACGACCCCAAGCAGCCTTGAACAAACCGGAAGGGTGGTAACGCTGATGTT
GGTTTTTACTTGTTTTTACTTGTTTTTGCTTGTTTTTGCTTTACTCCGGT
CGTTGGCGCTTACTTGCCGGCCTCCCATCTCGTATATACTTTGTGCCTGC
CGTGCCTGTGTATGTCTGTGCGACTGTGTGTGTTTTTGTCTGTCTCGTTT
CTCTCGCTAGGAATTCGAGCAAGACCAGTATCACCGGCGGTCTGTCATGG
TTGACGATGGAAAATTGAGAAAATTGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5882:5241..8867+

>mRNA_H-paniculata_contig5882.13502.1 ID=mRNA_H-paniculata_contig5882.13502.1|Name=mRNA_H-paniculata_contig5882.13502.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig5882:5241..8867+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAGCAACTTTTTTGATCGACGACTCCTACTTCCCTTTCCTTCCCTTTC
ATCCCACCACATAATCAATGATCAGAAGGACGTTGTGGACGACAAGTTGA
AGTTGGTTATCAGGAATTTTCCGGTCATGAGACTGCTGCTAGTCGGTTTT
GGAGCATTCTGCTGCCTGTTACATGTTGCAGGATTTAGCGGGGGGGTGGG
CTGTCCGTTGTACATTTCTGCGAGGATCAGGACTGGCGGCGCTAGATCGC
GGTCTCATGTGTTTGATGTAAATAATGGTCGGAGAATCGCGGTGTTTGAT
GCGGCAGCTGTCCCCCACCGGCGGTGCTCAATGATGAGTGCTCGACATGC
GAAGAGCAACTTTTTTGATCGACGACTCCTACTTCCCTTTCCTTCCCTTT
CATCCCACCACATAATCAATGATCAGAAGGACGTTGTGGACGACAAGTTG
AAGTTGGTTATCAGGAATTTTCCGGTCATGAGACTGCTGCTAGTCGGTTT
TGGAGCATTCTGCTGCCTGTTACATGTTGCAGGATTTAGCGGGGGGGTGG
GCTGTCCGTTGTACATTTCTGCGAGGATCAGGACTGGCGGCGCTAGATCG
CGGTCTCATGTGTTTGATGTAAATAATGGTCGGAGAATCGCGGTGTTTGA
TGCGGCAGCTGTCCCCCACCGGCGGTGCTCAATGATGAGTGCTCGACATG
CGGCAGCAGATCTAGAAATCGTGGAAGCCATCGCGCAAGGCAACGGTGGC
GCTGCTCCTACCCTCACCGGGGTGCGTTCCTGGACAGAGGCAGCAGATCT
AGAAATCGTGGAAGCCATCGCGCAAGGCAACGGTGGCGCTGCTCCTACCC
TCACCGGGGTGCGTTCCTGGACAGAGGAATTCGAGCAAGACCAGTATCAC
CGGCGGTCTGTCATGGTTGACGATGGAAAATTGAGAAAATTGGAATTCGA
GCAAGACCAGTATCACCGGCGGTCTGTCATGGTTGACGATGGAAAATTGA
GAAAATTG
back to top