mRNA_H-paniculata_contig5882.13501.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5882.13501.1
Unique NamemRNA_H-paniculata_contig5882.13501.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5882.13501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5882contigH-paniculata_contig5882:1408..5071 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size561
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.8864677-CDS-H-paniculata_contig5882:1409..18381622930641.8864677-CDS-H-paniculata_contig5882:1409..1838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 1410..1838 -
1691481385.6208231-CDS-H-paniculata_contig5882:1409..18381691481385.6208231-CDS-H-paniculata_contig5882:1409..1838Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 1410..1838 -
1622930641.901235-CDS-H-paniculata_contig5882:4942..50711622930641.901235-CDS-H-paniculata_contig5882:4942..5071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 4943..5071 -
1691481385.6327834-CDS-H-paniculata_contig5882:4942..50711691481385.6327834-CDS-H-paniculata_contig5882:4942..5071Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5882 4943..5071 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5882.13501.1prot_H-paniculata_contig5882.13501.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5882 1410..5071 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5882.13501.1

>prot_H-paniculata_contig5882.13501.1 ID=prot_H-paniculata_contig5882.13501.1|Name=mRNA_H-paniculata_contig5882.13501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=186bp
RQRVQSLVCPLLGGSGTGEVKRGMEENEHPVWAELRDMQAHEQREFEARA
RAEGSSFLRLHPRRAPISHHTTAATTTTTTTRGESQFRFPWGGGGGIHKT
HNLPASRYNTPGGPMTQQHHQQHGTGPLSGGGGGGGGGSGAGVSPGHPAG
TATAEHEESAGNEGGEWPSRGRRHIGGTRGGGGGGG
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mRNA from alignment at H-paniculata_contig5882:1408..5071-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5882.13501.1 ID=mRNA_H-paniculata_contig5882.13501.1|Name=mRNA_H-paniculata_contig5882.13501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3664bp|location=Sequence derived from alignment at H-paniculata_contig5882:1408..5071- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAGAGAGTACAGTCCCTTGTTTGCCCTTTGCTGGGTGGGTCTGGGAC
AGGGGAAGTAAAGAGAGGTATGGAGGAAAATGAGCACCCTGTGTGGGCGG
AGCTGAGGGACATGCAGGCGCACGAACAGGTGAGTCTAATTCTGTGCTAG
TTAAGCAAAAAGAAAATGCCCCTCTGGATTCATTTCGGGAAACCGACTGA
GGGAGAAAACGGGAACTCCTTCTCTCTGTCTTCGTCTTCGTGATTTTGGT
CATCAATCACGATGCACGACCCTGTCGTTGGCTGTTGCCGAGGGTTCGTA
TTTTGGTCGTCACGGCTCAAGGATGAATCCGCGACGAAGAGCTGGTTCCA
TCTTCTGGGCGAGCATTCCTCGGGCTGTGGAGTCTTGAAAGATCGAAACG
CGCAGTGGTAATACATTATTGCTGTACCACTGATATTTGATGTACAAACT
ACAGATGTCTGTTGTGCAGTCTATCATTTGAAGTAAAACTAGAAGACACT
ATTATAATAGAGTACAATACTGGCATATTGGCTCTATTAACATTGGAGAT
GATGTACGTATGCTGACTGTAATTCAACCCTACTGTCTGCAAGTAGTACT
GCTGCTTGTCTTCTGTTCTCTCTCTTGTCCTTTCGTCGTGTTGTGTGGTT
GTCTACTTTACAGAATAATGGAAAAGTCAAGGCTCCTCTGTTGCCTGGGT
TTGACTCTACAACATGTCACGCTGGTTAACATACAGTTAGTGACGACTAA
CAGAACGAGACTGTAGATAGTTTTTTTTTTTTGCTCTCTCTCTCTCTTTC
TCTCTCTTTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTC
TCTTTCTCTCTCTCTCTCTTTTTCTCTCTCTCTCTTCCTCTCTCTCTCTA
ATCTATCGTCTTTGCGGAGGGAATCAATCCAAAGGCAAATAGAAATACTC
AGGAGAGCTGTACTGTCTGTTTACATGTACTTGGTCGAATACACCCCACA
GAAACGACAGCATCTAGTACATATTATGGGAGTAGTGAGGCGAAAGAAGC
TCTACTACTGCTCGTAGATTAACTTCTTCAAGACAGTGCTATGCCCATGC
GTACCAGATAAAAGAAACTCATTGAAAGTCAAATGCCCTCTATGGCTCAA
GCATGGATTATGGGAAATAGGTCATTGCCCATGATCGCGAGTAAAGCTTC
AAGTAAAGCCCTGTGGCTCCAGCGTTTTTCTTATTGTTGACGTTTTACTA
CTTCTGTTGTACCAAAACGTTGTGAGGAAAGTCACCAGACAGACTGATAA
TCTCGTCTGGTGATGCTCTTGCTCTGGCTACGTACTGAGCGAGCTATCCT
CCTCCATGTTTTTTTTTTTTTCTGTGACAGTAGAGTATGCAACGCAGATC
CGCACTCACTTGTTCTCTCTGTTCCGGCCACTTCCGTTTTTTTTGTTTGT
TTTTTCCATTGGCGGGTTGATTCATCAATTCAACTCCCGGTGACTGACTG
CTGTGCCCCTTATTCATCAAATATTGCTGACAGGTGTACACAAGTGAAGG
TTGAGGTTACATGCATAATAATAACCCCAACAGGGGTACGACGATGATGA
AGCTTTTTATGAATTTGGTAGTCCTTCTAACTGTGACAAGCATGTTGGTT
GACTCGTGGATGAGGATGATGGTGGATAAAAGGGTGTCTTATTTCTGTCA
TGGGTTCACGTGAGAGCTTTTTTTTAATGATTCCCGTGTAGTAAATACGC
GAGTGATACAGCAATAACTCAATACTTCGTTTCGAAGGTTGTATACCATG
TCGTGCATGGTCAAATATGTGAGAGGTATCCTCCTCCGCCCCTCTCCTAA
TTCTGCCATGCCCTCCCCCGCCTCAACGGTTCCACCGTGTGGCGATCCGA
GAATCCTCATACTGTACAAGATTTGATAAAAAAAATGCTTCAAAACTGTC
GAGCAAGATCACTCTAAAACGCAACTCATCCACAGCACCTTTCGTACAGC
AAGCACAGCAGCAGCATTAGCATCAGGACCAGCGAATAAGAGAAAGACGT
ATAGTACTTACGTACAGCATTCGAAGTACAGTAGATGTGCCCAACGTACA
AAAACTCCATACATATATATATATATATAGTTGCTTCATCTGTCTCATGA
AGTATACTCGGTGATGATTATAGAGGCACTTGCACATTTCCGATTTATTC
ATTAAAAAAAATGAAATTCTATATGTTTTTTGGTTTGAAATCCATTTTTT
GGGGTTAAACAGTTGGCTTCATACACCAAAACATCCGGCGTGAAGAAAAG
TACTCGGCAAAAAAAGGGCCCTTTTTTGGGACTTTTTCCCATAGGACTCG
AAAAAAACGTCCACTTTTTGCGTTTTTCGGCCTAGTTCTGTTTTTTTTAA
CGGCGTGTGTTTTGGTGTTAAAAGCTAACTAATTAACTCAATATTTTGGG
GTTCAACCCCCAAAACACGTAGGATTCTACACACACACACATACACACAC
ATATATATATATATATTTTTTTATCTGAAATAATTTAAATGTGTCTCTAA
TCACGACATAATGTATGTAATTGAGGGACAATACCAAAAATCCCTCAAAA
GGGCCTTTTTTCGGCCGAGTACTTTTTTTCACGGTGGGTCAACTGTTTTA
CCAATTTTGGGGGGTTTCAACCTCAAAAACATTTCAAATTCCATTACATA
TTGAAGAAATTCATCGGAGATATTTAAGTGCCTCTTTAATCATAACTGAA
GTATACTCATGAGACAGAGGAAGTATACGTGAAACAAAATCATTAATGGG
TGGAGAGCCATAACCCGTATTCTCTCCCTTGTAGCATTAAAACTCTTTAT
AACAAACAGAAAAAAACGCCCACCCGCACTATGATGTATTCCCTCATCGT
TGCCATGCAAAAAACACATAACCCGCCAGAATCCCCCACCCCTTGCCCCG
CCCCAATACTGGTTCTAATTTTGCTAACAAGCAGACAAGTCTCCCCCCCC
CCCTAATTTGATCCGTTTGTGAAAAAATCATCCAGCCGCTTGAAGATGCT
GATCATATACTAGTACCTCCATTTTGTTTTACGTTTAGTTATCGTCATTG
GTTCTCCTCCTACGTTTGACTCGCTCTGTAACTCTATGGTACTTCCCTCC
ACCCCCCCGTCCCCCGTCCCCTTGTCTCCCCTCCCCTCTTTTCCCAAACA
ACTCCCTCCCCCTTGTCCCCGACAAACGATTAGCGGGAGTTCGAAGCCCG
CGCTCGCGCCGAAGGCTCAAGCTTCTTGCGTCTCCACCCCCGCAGAGCAC
CCATCTCCCATCATACCACTGCTGCCACCACCACCACCACCACTACTCGT
GGCGAAAGCCAATTCCGCTTCCCCTGGGGCGGCGGCGGCGGCATCCACAA
GACACACAATCTACCGGCGTCGAGATACAACACTCCCGGCGGGCCGATGA
CGCAGCAGCACCACCAACAGCACGGGACTGGTCCTTTATCCGGCGGCGGC
GGCGGCGGCGGCGGCGGCAGCGGGGCAGGAGTATCCCCTGGGCATCCCGC
CGGCACTGCGACGGCGGAGCACGAAGAAAGTGCTGGTAACGAGGGTGGTG
AGTGGCCGTCTCGCGGAAGGCGCCACATTGGCGGCACCCGTGGTGGCGGT
GGGGGAGGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig5882:1408..5071-

>mRNA_H-paniculata_contig5882.13501.1 ID=mRNA_H-paniculata_contig5882.13501.1|Name=mRNA_H-paniculata_contig5882.13501.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1116bp|location=Sequence derived from alignment at H-paniculata_contig5882:1408..5071- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGACAGAGAGTACAGTCCCTTGTTTGCCCTTTGCTGGGTGGGTCTGGGAC
AGGGGAAGTAAAGAGAGGTATGGAGGAAAATGAGCACCCTGTGTGGGCGG
AGCTGAGGGACATGCAGGCGCACGAACAGAGACAGAGAGTACAGTCCCTT
GTTTGCCCTTTGCTGGGTGGGTCTGGGACAGGGGAAGTAAAGAGAGGTAT
GGAGGAAAATGAGCACCCTGTGTGGGCGGAGCTGAGGGACATGCAGGCGC
ACGAACAGCGGGAGTTCGAAGCCCGCGCTCGCGCCGAAGGCTCAAGCTTC
TTGCGTCTCCACCCCCGCAGAGCACCCATCTCCCATCATACCACTGCTGC
CACCACCACCACCACCACTACTCGTGGCGAAAGCCAATTCCGCTTCCCCT
GGGGCGGCGGCGGCGGCATCCACAAGACACACAATCTACCGGCGTCGAGA
TACAACACTCCCGGCGGGCCGATGACGCAGCAGCACCACCAACAGCACGG
GACTGGTCCTTTATCCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGGG
CAGGAGTATCCCCTGGGCATCCCGCCGGCACTGCGACGGCGGAGCACGAA
GAAAGTGCTGGTAACGAGGGTGGTGAGTGGCCGTCTCGCGGAAGGCGCCA
CATTGGCGGCACCCGTGGTGGCGGTGGGGGAGGGGGTCGGGAGTTCGAAG
CCCGCGCTCGCGCCGAAGGCTCAAGCTTCTTGCGTCTCCACCCCCGCAGA
GCACCCATCTCCCATCATACCACTGCTGCCACCACCACCACCACCACTAC
TCGTGGCGAAAGCCAATTCCGCTTCCCCTGGGGCGGCGGCGGCGGCATCC
ACAAGACACACAATCTACCGGCGTCGAGATACAACACTCCCGGCGGGCCG
ATGACGCAGCAGCACCACCAACAGCACGGGACTGGTCCTTTATCCGGCGG
CGGCGGCGGCGGCGGCGGCGGCAGCGGGGCAGGAGTATCCCCTGGGCATC
CCGCCGGCACTGCGACGGCGGAGCACGAAGAAAGTGCTGGTAACGAGGGT
GGTGAGTGGCCGTCTCGCGGAAGGCGCCACATTGGCGGCACCCGTGGTGG
CGGTGGGGGAGGGGGT
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