mRNA_H-paniculata_contig5880.13500.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5880.13500.1
Unique NamemRNA_H-paniculata_contig5880.13500.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig5880.13500.1 vs. uniprot
Match: A0A6H5KYX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYX7_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.940e-25
Identity = 54/91 (59.34%), Postives = 58/91 (63.74%), Query Frame = 1 
Query:    1 MGNTAAAADQEERSSLVRKLFERLGACNGGQATGALLAGLVRQPVPETRHAAYDVLRCTMWQPGGWGLLVMFSQPGFREFLEDRGMEASKV 273
            MGNTAAA   +ERS+L   LF RL   N  Q  G  L  L RQPV E RHAAY V+RC  WQPGGWGL  + SQPGF EFLE R   ASK 
Sbjct:  425 MGNTAAAEAAKERSTLCLMLFTRLSESNTNQRAGGWLLDLARQPVSEVRHAAYAVMRCAAWQPGGWGLSALLSQPGFLEFLEKRDTAASKA 515
[Close]
BLAST of mRNA_H-paniculata_contig5880.13500.1 vs. uniprot
Match: A0A7S4DGG8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGG8_HETAK)

HSP 1 Score: 57.8 bits (138), Expect = 1.230e-8
Identity = 36/68 (52.94%), Postives = 40/68 (58.82%), Query Frame = 1 
Query:   73 GACNGGQATGALLAGLVRQPVPETRHAAYDVLRCTMWQ-PGGWGLLVMFSQPGFREFLEDRGMEASKV 273
            GA  GG  T A L GL RQPVPE RHAA DVLR    Q PGGWG+L + + PG    L  R    SK+
Sbjct:    3 GAPGGG--TPAFLLGLARQPVPELRHAALDVLRAAAGQRPGGWGVLAV-ADPGVVALLRRRDALNSKL 67
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5880.13500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KYX7_9PHAE3.940e-2559.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S4DGG8_HETAK1.230e-852.94Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5880contigH-paniculata_contig5880:11485..12441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionArmadillo-like helical
Ec32 orthologEc-16_003720.1
Exons2
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.814998-CDS-H-paniculata_contig5880:11484..116341622930641.814998-CDS-H-paniculata_contig5880:11484..11634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 11485..11634 -
1691481385.6006818-CDS-H-paniculata_contig5880:11484..116341691481385.6006818-CDS-H-paniculata_contig5880:11484..11634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 11485..11634 -
1622930641.8335783-CDS-H-paniculata_contig5880:12300..124411622930641.8335783-CDS-H-paniculata_contig5880:12300..12441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 12301..12441 -
1691481385.6096702-CDS-H-paniculata_contig5880:12300..124411691481385.6096702-CDS-H-paniculata_contig5880:12300..12441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 12301..12441 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5880.13500.1prot_H-paniculata_contig5880.13500.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5880 11485..12441 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5880.13500.1

>prot_H-paniculata_contig5880.13500.1 ID=prot_H-paniculata_contig5880.13500.1|Name=mRNA_H-paniculata_contig5880.13500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
MGNTAAAADQEERSSLVRKLFERLGACNGGQATGALLAGLVRQPVPETRH
AAYDVLRCTMWQPGGWGLLVMFSQPGFREFLEDRGMEASKVKGDGA*
back to top

mRNA from alignment at H-paniculata_contig5880:11485..12441-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5880.13500.1 ID=mRNA_H-paniculata_contig5880.13500.1|Name=mRNA_H-paniculata_contig5880.13500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=957bp|location=Sequence derived from alignment at H-paniculata_contig5880:11485..12441- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAATACGGCGGCCGCTGCTGATCAAGAAGAGCGGAGCTCTCTCGT
GCGCAAGCTTTTCGAGAGACTGGGCGCGTGCAACGGTGGACAGGCCACGG
GAGCGCTGCTGGCTGGGCTCGTGCGGCAGCCTGTGCCGGAGGTAAGGGCG
GGGGGGGGGGTTACTCGTATTTTTAGACCAGTGGGGGGGAAAGGGGGGGG
GTCTCAAGTAAGAATCCCTTGCGGGGGTTGTGTTTCGGCTTGAATTCAGC
ATCGCCGAGCGCGCTCGATAACTTGCGTGGTCGTTCGACCGCTGAAATAT
TGGTGCAATTTATCCATGCCAAATGTTGGTGTTTTTCTAGCTTCTCGTTC
GGTTTTCCGTCTGGACAGGGTGGGTCTATCTACTTGAGATGGTGGCTGCT
GTGCGTTCCTCCTCGATTTTTTATTTCAAGTACAACAGTTGAAACACCCG
AGATCGTCATAGCTGGGGGCTTCGATTATGCGGTGACAAGGAACCAACAG
ACTGCACGTCTACGCCCTATATACAGCGCAATTAGCTAAAAACCAGAGGA
GCTACAACACGCGCAATGCGTCGAAAATTTGGATAATGACCTCAAGGCGA
AAAATATCATACACTGCGACGTTATCATAGCTTGTAACGAACGCTGCACG
ACTCAGACGCTAACTTTTGCTGAGGAGCTTTTTCCGTTTTATAAAAATAT
ATGTATTGTACCCTCTCCCCCTTCCCCTCCCTTCCTCCGCCGCACGCATG
CATGCACTCCCATTGCGGTTTGGCTTTGATTGCCTTATGGCATTGACTTA
TTAATAGACTCGGCATGCTGCGTATGACGTGTTGAGATGCACGATGTGGC
AGCCCGGCGGGTGGGGACTACTGGTGATGTTCTCACAGCCAGGTTTCCGC
GAGTTTCTTGAAGATCGCGGTATGGAGGCCTCCAAGGTAAAAGGCGATGG
AGCATGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig5880:11485..12441-

>mRNA_H-paniculata_contig5880.13500.1 ID=mRNA_H-paniculata_contig5880.13500.1|Name=mRNA_H-paniculata_contig5880.13500.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig5880:11485..12441- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGGAATACGGCGGCCGCTGCTGATCAAGAAGAGCGGAGCTCTCTCGT
GCGCAAGCTTTTCGAGAGACTGGGCGCGTGCAACGGTGGACAGGCCACGG
GAGCGCTGCTGGCTGGGCTCGTGCGGCAGCCTGTGCCGGAGATGGGGAAT
ACGGCGGCCGCTGCTGATCAAGAAGAGCGGAGCTCTCTCGTGCGCAAGCT
TTTCGAGAGACTGGGCGCGTGCAACGGTGGACAGGCCACGGGAGCGCTGC
TGGCTGGGCTCGTGCGGCAGCCTGTGCCGGAGACTCGGCATGCTGCGTAT
GACGTGTTGAGATGCACGATGTGGCAGCCCGGCGGGTGGGGACTACTGGT
GATGTTCTCACAGCCAGGTTTCCGCGAGTTTCTTGAAGATCGCGGTATGG
AGGCCTCCAAGGTAAAAGGCGATGGAGCATGAACTCGGCATGCTGCGTAT
GACGTGTTGAGATGCACGATGTGGCAGCCCGGCGGGTGGGGACTACTGGT
GATGTTCTCACAGCCAGGTTTCCGCGAGTTTCTTGAAGATCGCGGTATGG
AGGCCTCCAAGGTAAAAGGCGATGGAGCATGA
back to top