mRNA_H-paniculata_contig5880.13499.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5880.13499.1
Unique NamemRNA_H-paniculata_contig5880.13499.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A7S2SK93_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SK93_9STRA)

HSP 1 Score: 236 bits (601), Expect = 2.310e-73
Identity = 133/229 (58.08%), Postives = 148/229 (64.63%), Query Frame = 1
Query:    4 AACHVCEGGGDLARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAPPEA-RAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDESAVTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLASSSD 687
            A CH C  GG  ARNHCPNRTVLGIL K GTYA++LTLP  NLHVVP++V+ A A F EPLAAACRI+EQGL  P   R AVLGDGKLGLLIAEV+ R       S E      T + GRH EKM L            E        E A+    G +DVV+DATGSP GL  A  LCRP+GT+VLKSTCAAG  FN AP VI+E RV+GSRCGPF  AL LL S  D
Sbjct:  104 ATCHTCGCGGVRARNHCPNRTVLGILNKDGTYAQYLTLPVTNLHVVPESVSTANAAFVEPLAAACRIVEQGLIDPTTDRVAVLGDGKLGLLIAEVVGRHVHGGASSTEEPSSPCTVLFGRHPEKMALVSQ---------EAHVAVHSSEDALPTHGGQYDVVIDATGSPQGLDLAQKLCRPLGTLVLKSTCAAGTDFNTAPFVIDELRVIGSRCGPFPEALALLESGLD 323          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A7S1Y2C0_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y2C0_9STRA)

HSP 1 Score: 232 bits (592), Expect = 1.860e-71
Identity = 132/244 (54.10%), Postives = 165/244 (67.62%), Query Frame = 1
Query:    1 CAACHVCEGGGD-----LARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAPPEA--RAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRV--DAGDESA----VTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLASSSDDV 693
            C +C VC+G  D     ++RNHCPNRTVLGIL ++GT AE+LTLP +NLH+VPD+++D  A+F+EPLAAACRI+EQGL   E+  + A+LGDGKLGL+IAEV+ R   S   + E   P    + G+H  K+ L        E  G +T++  D  D+SA      A A A+DVVVDATG+P  L  A  LCRPMGTVVLKSTCAAG  FN AP VI+E RV+GSRCGP + ALELLA   DD 
Sbjct:  127 CFSCRVCQGSRDSCCSQMSRNHCPNRTVLGILNRNGTMAEYLTLPVQNLHLVPDHISDEDAVFSEPLAAACRIVEQGLVSIESSDKVAILGDGKLGLMIAEVMGREYLSVKGTAEAPEP--PILFGKHDHKLKL-------VENSGVITKMVSDCQDDSAFNGVAAAHAAAYDVVVDATGNPAALLLAAGLCRPMGTVVLKSTCAAGEQFNAAPFVIDELRVIGSRCGPIDKALELLALQEDDA 361          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A7S1AD40_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AD40_NOCSC)

HSP 1 Score: 228 bits (580), Expect = 3.080e-70
Identity = 128/231 (55.41%), Postives = 156/231 (67.53%), Query Frame = 1
Query:    1 CAACHVCEGGGDLARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAPPEARAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDESAVTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLASSSDDV 693
            C +C +C  GG LARNHC  R+VLGIL   GTYAEFLTLP  NLHVVPD +++ AA+F EPLAAA R++EQGL  PE R  V GDGKLGLL+AEVLAR+  S              ++GRH +KM L    LGD     E +  +  D S V  +AG+FDVVV+ATG+PLGL SA +L  PMGTVVLKSTCA+ A  + +P+V+ E +VVGSRCGPF  A+ LL S   DV
Sbjct:   95 CNSCGICSRGGSLARNHCLRRSVLGILNHDGTYAEFLTLPVSNLHVVPDGISNEAAVFVEPLAAAFRVVEQGLVQPEHRVCVQGDGKLGLLVAEVLARQGLSP----------KPVLLGRHADKMAL----LGDLVQAREASSPEESD-SLVAELAGSFDVVVEATGTPLGLTSAASLVLPMGTVVLKSTCASPATIDTSPLVVRELKVVGSRCGPFPEAVTLLNSGDLDV 310          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A7S0Q5J9_9EUKA (Hypothetical protein n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q5J9_9EUKA)

HSP 1 Score: 224 bits (571), Expect = 7.390e-69
Identity = 136/228 (59.65%), Postives = 155/228 (67.98%), Query Frame = 1
Query:    4 AACHVCEGGGDLARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAPPEARAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDESAVTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLASSSD 687
            A C  C  GG  ARNHCP RTVLGIL K GTYA++LTLP RNLHVVPD+VT   A FAEPLAAA RI+EQGL     R AV+GDGKLGLLI+EVL R AA+        RP    + GRH  KM L  +G   A    EL+ V+A  E+A      AFD+VVDATGSP GL  +  +CRPMGTVVLKSTCAA   FN AP VI+E RV+GSRCGPF+ AL+LLA   D
Sbjct:  112 ATCSTCACGGARARNHCPTRTVLGILRKDGTYAQYLTLPARNLHVVPDSVTTENAAFAEPLAAAFRIVEQGLVRATDRVAVIGDGKLGLLISEVLGRHAAAA----GGPRP---VLFGRHDSKMRLLSSG---ANVDTELS-VNALPENAA-----AFDLVVDATGSPAGLDLSREICRPMGTVVLKSTCAASKDFNTAPFVIDELRVMGSRCGPFKPALQLLAEGLD 323          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A1E7FAK7_9STRA (GroES-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAK7_9STRA)

HSP 1 Score: 221 bits (563), Expect = 1.480e-67
Identity = 130/250 (52.00%), Postives = 170/250 (68.00%), Query Frame = 1
Query:    1 CAACHVC---------EGGGDL-ARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLA---PPEARAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDESAVTAM----AGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLASSSDDVID 699
            C++C+VC         +G   + +RNHCP R+VLGIL ++GT AE+LTLP  NLH VP +V+D  A+FAEPLAAACRI+EQGL    PP+ + A+LGDGKLGL+IAEVL R  ++ +   +  +P    + G+H+ K+ L    + ++ G    +  D  DE A   +    AG FDVVVDATGSP GL+ A  LCRPMGT+VLKSTCAAG  FN AP VI+E RVVGSRCGP + AL+LLA ++D+ ID
Sbjct:   71 CSSCNVCLNFPHDRNVKGNCPMMSRNHCPTRSVLGILNRNGTIAEYLTLPVSNLHEVPSHVSDEVAVFAEPLAAACRIVEQGLVRVIPPD-KVAILGDGKLGLMIAEVLGREHSTRLGCSKYPKP---ILFGKHKHKLDL----VRESAGVDCRSVSDCKDEKAFNGVSAEYAGQFDVVVDATGSPAGLSLASGLCRPMGTLVLKSTCAAGEKFNAAPFVIDELRVVGSRCGPIDKALDLLAITNDNKID 312          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A0M0JNU1_9EUKA (L-threonine 3-dehydrogenase n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JNU1_9EUKA)

HSP 1 Score: 220 bits (560), Expect = 2.240e-67
Identity = 126/227 (55.51%), Postives = 147/227 (64.76%), Query Frame = 1
Query:    7 ACHVCEGGGDLARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAPPEARAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDESAVTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLASSSD 687
            +C  C  G D ARNHCP RTVLGIL K GTY E +TLP +NLHVVPD+V+   A FAEPLAAA RI+EQ L  P  + AV+GDGKLG+LIAEVL R  A       R        +GRH EKM L  A                  +  + + A +FDVVVDATGSP GL  A ALCRP+GT+VLKSTCAAGA FN AP V++E +++GSRCGPF  ALELLAS  D
Sbjct:   92 SCFTCACGWDRARNHCPVRTVLGILNKDGTYQERITLPAKNLHVVPDHVSSENAAFAEPLAAAFRIVEQKLVAPTDKVAVVGDGKLGVLIAEVLGR--AQVAAGGPR-----VVFVGRHPEKMALVSAAAAVEP---------VASDGVLPSGASSFDVVVDATGSPAGLDLARALCRPLGTLVLKSTCAAGANFNTAPFVVDELKIIGSRCGPFPPALELLASGLD 302          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A7S4HX77_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4HX77_9STRA)

HSP 1 Score: 216 bits (551), Expect = 1.420e-65
Identity = 138/261 (52.87%), Postives = 161/261 (61.69%), Query Frame = 1
Query:    1 CAACHVCEGGGDL---------ARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAP-------------------PEARAAVLGDGKLGLLIAEVLAR----RAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDESAVTAM----AGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLA 675
            CA+CHVC     L         +RNHCPNRTVLGIL  +GT AE+LTLP  NLHVVPD V+D  A+FAEPLAAACRI+EQ L                     P+ R A+LGDGKLGL+IAEVL R    R AS+V ++    P S  + G+HR KM L      DA    E     A DES+ + +    A  +DVVVDATGSP GL  A  LCRPMGT+VLKSTCA G  FN AP VI+E RVVGSRCGP + ALELL+
Sbjct:  123 CASCHVCTNDDRLDDMPECSMMSRNHCPNRTVLGILNHNGTMAEYLTLPVSNLHVVPDGVSDEEAVFAEPLAAACRIVEQNLVRYADDGDRGKGEGSAGKWRRPD-RVAILGDGKLGLMIAEVLGREHVARNASSV-AEGGDAPPSPVLFGKHRHKMDLVAGSGVDARFVSE-----AKDESSFSGVHANHAAKYDVVVDATGSPNGLKLAAGLCRPMGTLVLKSTCADGEKFNAAPFVIDELRVVGSRCGPIDRALELLS 376          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A7S4EC03_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EC03_9STRA)

HSP 1 Score: 212 bits (539), Expect = 4.400e-64
Identity = 124/224 (55.36%), Postives = 144/224 (64.29%), Query Frame = 1
Query:    1 CAACHVCEGGGDLARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAPPEARAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDESAVTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELL 672
            C  C +CE GG  ARNHCP RTVLGIL K+GTY E LTLP RNLHVVPD V    A FAEPLAAA R++EQ L P + + A++GDGKLGLLI EVL R A       +R+      + GRH  KM L  +         E     A  ++A+   A A+DVVVDATGSP GL  +  LCR  GT+VLKSTCAAG  FN AP V++E RV GSRCGPF  ALELL
Sbjct:  108 CNTCMLCERGGPRARNHCPKRTVLGILNKNGTYQERLTLPARNLHVVPDCVKTENAAFAEPLAAAFRVVEQNLVPAKTKIAIVGDGKLGLLIGEVLGRHA-------QRTGSPRPVLYGRHVSKMKLLSS---------ESQCDTALSDTALPKNAYAYDVVVDATGSPAGLDLSRQLCRTEGTLVLKSTCAAGTDFNTAPFVVDELRVQGSRCGPFGPALELL 315          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A1Z5KM79_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KM79_FISSO)

HSP 1 Score: 211 bits (537), Expect = 1.290e-63
Identity = 131/247 (53.04%), Postives = 164/247 (66.40%), Query Frame = 1
Query:    1 CAACHVCEGGGD-----LARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLA----PPEARAAVLGDGKLGLLIAEVLARRAASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRV--DAGDESAVT----AMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAG--FNPAPIVINEQRVVGSRCGPFEAALELLASSSDD 690
            CAAC VC+   D     ++RNHCPNR+VLGILG++G+ AE+LTLP RNLH VPD++ D  A+F+EPLAAACRI+EQGL     PP+ + A+LGDGKLGL+IAEVL R     V +       +  + G+H  K+ L    + DA   G +T++  +  D SA      A AG FDVVVDATGSP  LA + ALCRPMGT+VLKSTCA+     FN AP VI+E +VVGSRCGP + AL LLA    D
Sbjct:   92 CAACGVCDKQYDHRCSQMSRNHCPNRSVLGILGRNGSMAEYLTLPVRNLHPVPDDMPDEVAVFSEPLAAACRIVEQGLVSYNDPPD-KVAILGDGKLGLMIAEVLGREHTERVGN----ALDAPVLFGKHEHKLQL----VSDA---GVITKLIKECQDSSAFNGVSPAYAGKFDVVVDATGSPDALALSAALCRPMGTLVLKSTCASTPEKPFNSAPFVIDELKVVGSRCGPIDRALALLAIPDSD 326          
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Match: A0A7S1D6F2_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D6F2_CYCTE)

HSP 1 Score: 211 bits (538), Expect = 1.490e-63
Identity = 130/246 (52.85%), Postives = 155/246 (63.01%), Query Frame = 1
Query:    1 CAACHVC-------EGGGDLARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDNVTDAAALFAEPLAAACRILEQGLAPPEA----RAAVLGDGKLGLLIAEVLARRAA---STVFSDERSRPGSTTII-GRHREKMVLC------CAGLGDAEGRGELTRVDAGDESAVTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPAPIVINEQRVVGSRCGPFEAALELLA 675
            CA C VC       E    ++RNHCPNRTVLGIL ++GT AE+LTLP  NLHVVPD+V D  A+FAEPLAAACRI EQ L    A    + A+LGDGKLGL+IAEVL R      +T  +D    P    ++ G+H+ K+ L       C  + + +       V AG        A  +DVVVDATGSP GL+ A  LCRPMGT+VLKSTCAAG  FN AP VI+E +VVGSRCGP E ALELLA
Sbjct:   99 CADCSVCFNAERLDERCCKMSRNHCPNRTVLGILKRNGTMAEYLTLPVSNLHVVPDDVPDEEAVFAEPLAAACRIPEQNLVYYNAQRPDKVAILGDGKLGLMIAEVLGREHTKHFATAANDASPPPPPRPVLFGKHQHKLDLVKDSGVVCKHVSECKDEKAFNGVAAGH-------AAQYDVVVDATGSPAGLSLAAGLCRPMGTLVLKSTCAAGEQFNAAPFVIDELKVVGSRCGPIEKALELLA 337          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5880.13499.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S2SK93_9STRA2.310e-7358.08Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1Y2C0_9STRA1.860e-7154.10Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S1AD40_NOCSC3.080e-7055.41Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A7S0Q5J9_9EUKA7.390e-6959.65Hypothetical protein n=1 Tax=Coccolithus braarudii... [more]
A0A1E7FAK7_9STRA1.480e-6752.00GroES-like protein n=1 Tax=Fragilariopsis cylindru... [more]
A0A0M0JNU1_9EUKA2.240e-6755.51L-threonine 3-dehydrogenase n=1 Tax=Chrysochromuli... [more]
A0A7S4HX77_9STRA1.420e-6552.87Hypothetical protein (Fragment) n=1 Tax=Odontella ... [more]
A0A7S4EC03_9STRA4.400e-6455.36Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Z5KM79_FISSO1.290e-6353.04Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S1D6F2_CYCTE1.490e-6352.85Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5880contigH-paniculata_contig5880:1451..3598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue2.7e-46
Seed eggNOG ortholog35128.Thaps261172
Hectar predicted targeting categoryother localisation
EggNOG free text desc.L-arabinose catabolic process
EggNOG OGsCOG1063@1,KOG0024@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size699
Cds size699
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5880.13499.1prot_H-paniculata_contig5880.13499.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5880 1451..3598 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.7091532-CDS-H-paniculata_contig5880:1450..15881622930641.7091532-CDS-H-paniculata_contig5880:1450..1588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 1451..1588 +
1691481385.5574257-CDS-H-paniculata_contig5880:1450..15881691481385.5574257-CDS-H-paniculata_contig5880:1450..1588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 1451..1588 +
1622930641.7285044-CDS-H-paniculata_contig5880:2322..25011622930641.7285044-CDS-H-paniculata_contig5880:2322..2501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 2323..2501 +
1691481385.5699742-CDS-H-paniculata_contig5880:2322..25011691481385.5699742-CDS-H-paniculata_contig5880:2322..2501Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 2323..2501 +
1622930641.750412-CDS-H-paniculata_contig5880:2639..28701622930641.750412-CDS-H-paniculata_contig5880:2639..2870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 2640..2870 +
1691481385.5823414-CDS-H-paniculata_contig5880:2639..28701691481385.5823414-CDS-H-paniculata_contig5880:2639..2870Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 2640..2870 +
1622930641.7736742-CDS-H-paniculata_contig5880:3447..35981622930641.7736742-CDS-H-paniculata_contig5880:3447..3598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 3448..3598 +
1691481385.5895264-CDS-H-paniculata_contig5880:3447..35981691481385.5895264-CDS-H-paniculata_contig5880:3447..3598Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5880 3448..3598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5880.13499.1

>prot_H-paniculata_contig5880.13499.1 ID=prot_H-paniculata_contig5880.13499.1|Name=mRNA_H-paniculata_contig5880.13499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=233bp
CAACHVCEGGGDLARNHCPNRTVLGILGKHGTYAEFLTLPCRNLHVVPDN
VTDAAALFAEPLAAACRILEQGLAPPEARAAVLGDGKLGLLIAEVLARRA
ASTVFSDERSRPGSTTIIGRHREKMVLCCAGLGDAEGRGELTRVDAGDES
AVTAMAGAFDVVVDATGSPLGLASACALCRPMGTVVLKSTCAAGAGFNPA
PIVINEQRVVGSRCGPFEAALELLASSSDDVID
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mRNA from alignment at H-paniculata_contig5880:1451..3598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5880.13499.1 ID=mRNA_H-paniculata_contig5880.13499.1|Name=mRNA_H-paniculata_contig5880.13499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2148bp|location=Sequence derived from alignment at H-paniculata_contig5880:1451..3598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGCAGCATGCCACGTCTGCGAGGGAGGAGGCGATCTCGCCAGAAATCA CTGTCCCAACCGCACAGTTCTCGGCATATTGGGCAAGCACGGCACGTACG CGGAGTTCCTGACGCTCCCATGCCGAAACCTCCACGTTGTGAGTTGACGA TCAGATGTCTGCCCGCGAGAGAGAACATGAATAGCTTGACGCGTAGATAT TTTGCGGGGAAAGGAGGCTGCGGGGGGTTCGTTAGGCAAGAGCGTGTGAA TTTTTTTTAGTTCTCCCTGGTTGTACTGACCTACAGGGATGGGTGTCTAA ATATAGTATTTTTCTAACTTGAAAGTTCTTACGGTGAAGCAGTAGTACAG TAGCGTGCGTGTCTGTTTGTTAGTTATCGTCTGGAGTCTCGAGAACTTCA ACGGTGCGAAAGCACAACGGTAGCGTTTCTTTTTACTATTTTCGTCGTAC AGGTAACTGCAGGATTTTATTCTGTATATATATATATATAGTCATATAAT CACCACGTCACCTCAAGATTGGCGTACAAACACCCCAAAACACAGGTGCT GGACATTGTCACCGACGCGGCTGTTGTAAGGCTTTATCGTTGAAGGTCGC TAGCCAACCCCCCCCCCCCCCCCCCCCCCCCCAACAGTGTACCCATCGCT CACTTCCAAAATAAATGGTGCGAAATCGAACCCCCCCTCCCCCCCAAAAA AAAGCAGGTGCTGGAGAAAAAGACCCGTCACCAGCATGGCTGATGTGCGG CTTGAACGCTAGAGGTCGGTCGCCAGCCGATCCCCGCAGCACGTGTTTTA GAACACTTCCCCATTGCTGCTCAGTCCCGAATAATTGGTGCGAACTCTCC CTCAAAAACAATCAAACGTCAGGTGCCGGACAATGTTACCGATGCCGCCG CCCTCTTCGCTGAGCCCCTCGCCGCCGCCTGCCGAATACTGGAGCAAGGC CTAGCGCCGCCGGAGGCCCGAGCGGCCGTATTGGGCGACGGTAAACTTGG ACTCCTGATCGCCGAGGTATTGGCACGACGAGCTGCTTCTACTGTTTTCT CGTCGAAAACGAAGCATCTCACCGATACCGTTACACCATCATCATCACCA TCATTGTCGTTACCTCTGCCTCCTGCTCCTCCTCCGACAAACGACAAAAC GGTAGCTGCGGATGGGAACTCCGGGGGCAGTGCCGGGAGTGACGAGCGTT CGCGGCCGGGAAGCACGACGATCATCGGGAGACACAGGGAGAAGATGGTG TTGTGCTGTGCTGGGCTAGGGGATGCGGAGGGGAGGGGCGAGTTGACTCG CGTGGATGCTGGTGACGAGTCTGCGGTGACGGCTATGGCCGGGGCGTTTG ATGTTGTTGTGGATGCTACAGGGAGTCCGCTAGGGTTGGCGTCCGCGTGT GCGCTCTGTCGGCCGATGGGGTAAGAGGGATTTACTTTCGACATACGTTC TGGCGACCTTAATTTATGGTGGAATCTTGTTATGTGTTGTTTCCTCGGAT CGAACAACAGCTGTATTTTTTTGACAGTATTGTTGTCTTCGTTCAGCCTC CCTGTGTGTGTGCCCCAGTCGTCACTTCGATGCTTTAAGGACTGCGTGAG GCAAAACCTACGTATCTATGCAGCAAGGTTGGCGGTGTGTTGTAGACCTG GAGTAGAGATGGTGGTAGAAGGAGAACTGGATTTACGTCTGGGAGCGTTT GGCGCAGAAAGGTCCCACGGTACACTTGAGTATATATCATATCTCCAATT GACGCATAAAACCTTGTACAACATGTACGTTTTTGCTCTAAGATGAAAGA TGAATATATGTGTTACTGGTGTTTGATTTTTTTTCGTGAAAAGAAAAAAA TTATTTTGGGGGGGTCATCTTCATTGTCGTAATTCTGTGTCGTAATGCCT GTCAATATGAAGAGGTTTAATGGAATAGGATTACGACGTCAACAATTTGC ATGTGTTTTTACTTTTTTTTTTTTTTTTTTGGCCGGGAACCAACAAGCAC CGTGGTGCTCAAGTCAACCTGTGCAGCCGGCGCCGGCTTCAACCCGGCCC CAATCGTCATCAATGAGCAGCGGGTCGTGGGGTCTAGATGCGGACCGTTC GAGGCAGCTCTGGAGCTGCTGGCATCGTCGTCCGATGACGTTATTGAT
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Coding sequence (CDS) from alignment at H-paniculata_contig5880:1451..3598+

>mRNA_H-paniculata_contig5880.13499.1 ID=mRNA_H-paniculata_contig5880.13499.1|Name=mRNA_H-paniculata_contig5880.13499.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1398bp|location=Sequence derived from alignment at H-paniculata_contig5880:1451..3598+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGCGCAGCATGCCACGTCTGCGAGGGAGGAGGCGATCTCGCCAGAAATCA
CTGTCCCAACCGCACAGTTCTCGGCATATTGGGCAAGCACGGCACGTACG
CGGAGTTCCTGACGCTCCCATGCCGAAACCTCCACGTTTGCGCAGCATGC
CACGTCTGCGAGGGAGGAGGCGATCTCGCCAGAAATCACTGTCCCAACCG
CACAGTTCTCGGCATATTGGGCAAGCACGGCACGTACGCGGAGTTCCTGA
CGCTCCCATGCCGAAACCTCCACGTTGTGCCGGACAATGTTACCGATGCC
GCCGCCCTCTTCGCTGAGCCCCTCGCCGCCGCCTGCCGAATACTGGAGCA
AGGCCTAGCGCCGCCGGAGGCCCGAGCGGCCGTATTGGGCGACGGTAAAC
TTGGACTCCTGATCGCCGAGGTATTGGCACGACGAGCTGCTTCTACTGTT
TTCTCGTGCCGGACAATGTTACCGATGCCGCCGCCCTCTTCGCTGAGCCC
CTCGCCGCCGCCTGCCGAATACTGGAGCAAGGCCTAGCGCCGCCGGAGGC
CCGAGCGGCCGTATTGGGCGACGGTAAACTTGGACTCCTGATCGCCGAGG
TATTGGCACGACGAGCTGCTTCTACTGTTTTCTCTGACGAGCGTTCGCGG
CCGGGAAGCACGACGATCATCGGGAGACACAGGGAGAAGATGGTGTTGTG
CTGTGCTGGGCTAGGGGATGCGGAGGGGAGGGGCGAGTTGACTCGCGTGG
ATGCTGGTGACGAGTCTGCGGTGACGGCTATGGCCGGGGCGTTTGATGTT
GTTGTGGATGCTACAGGGAGTCCGCTAGGGTTGGCGTCCGCGTGTGCGCT
CTGTCGGCCGATGGGTGACGAGCGTTCGCGGCCGGGAAGCACGACGATCA
TCGGGAGACACAGGGAGAAGATGGTGTTGTGCTGTGCTGGGCTAGGGGAT
GCGGAGGGGAGGGGCGAGTTGACTCGCGTGGATGCTGGTGACGAGTCTGC
GGTGACGGCTATGGCCGGGGCGTTTGATGTTGTTGTGGATGCTACAGGGA
GTCCGCTAGGGTTGGCGTCCGCGTGTGCGCTCTGTCGGCCGATGGGCACC
GTGGTGCTCAAGTCAACCTGTGCAGCCGGCGCCGGCTTCAACCCGGCCCC
AATCGTCATCAATGAGCAGCGGGTCGTGGGGTCTAGATGCGGACCGTTCG
AGGCAGCTCTGGAGCTGCTGGCATCGTCGTCCGATGACGTTATTGATCAC
CGTGGTGCTCAAGTCAACCTGTGCAGCCGGCGCCGGCTTCAACCCGGCCC
CAATCGTCATCAATGAGCAGCGGGTCGTGGGGTCTAGATGCGGACCGTTC
GAGGCAGCTCTGGAGCTGCTGGCATCGTCGTCCGATGACGTTATTGAT
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