mRNA_H-paniculata_contig5878.13495.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5878.13495.1
Unique NamemRNA_H-paniculata_contig5878.13495.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5878.13495.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5878contigH-paniculata_contig5878:6498..6773 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size277
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930641.231835-CDS-H-paniculata_contig5878:6497..67731622930641.231835-CDS-H-paniculata_contig5878:6497..6773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5878 6498..6773 +
1691481385.369878-CDS-H-paniculata_contig5878:6497..67731691481385.369878-CDS-H-paniculata_contig5878:6497..6773Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5878 6498..6773 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5878.13495.1prot_H-paniculata_contig5878.13495.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5878 6498..6773 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5878.13495.1

>prot_H-paniculata_contig5878.13495.1 ID=prot_H-paniculata_contig5878.13495.1|Name=mRNA_H-paniculata_contig5878.13495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
AIYFIFVFSFNTDHVIHFSNSTVDDTTHDTFEGAARGLGTVSGNKEFGLR
MQEPALFRTACRLRALFVTLILHGAPAAELQEQCQHDITKDY
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mRNA from alignment at H-paniculata_contig5878:6498..6773+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5878.13495.1 ID=mRNA_H-paniculata_contig5878.13495.1|Name=mRNA_H-paniculata_contig5878.13495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at H-paniculata_contig5878:6498..6773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATATATTTTATATTCGTTTTCTCCTTCAACACGGACCATGTCATTCA
TTTCAGCAACTCAACCGTAGATGACACTACTCACGATACGTTCGAGGGCG
CTGCGCGTGGGCTGGGTACTGTTTCCGGCAACAAAGAGTTCGGTCTGCGT
ATGCAAGAGCCAGCTTTGTTCAGAACCGCCTGCCGCCTTCGTGCCCTCTT
CGTTACATTGATCCTCCACGGGGCTCCAGCCGCTGAGTTACAGGAACAAT
GTCAACACGATATCACAAAAGATTAT
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Coding sequence (CDS) from alignment at H-paniculata_contig5878:6498..6773+

>mRNA_H-paniculata_contig5878.13495.1 ID=mRNA_H-paniculata_contig5878.13495.1|Name=mRNA_H-paniculata_contig5878.13495.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig5878:6498..6773+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGATATATTTTATATTCGTTTTCTCCTTCAACACGGACCATGTCATTCA
TTTCAGCAACTCAACCGTAGATGACACTACTCACGATACGTTCGAGGGCG
CTGCGCGTGGGCTGGGTACTGTTTCCGGCAACAAAGAGTTCGGTCTGCGT
ATGCAAGAGCCAGCTTTGTTCAGAACCGCCTGCCGCCTTCGTGCCCTCTT
CGTTACATTGATCCTCCACGGGGCTCCAGCCGCTGAGTTACAGGAACAAT
GTCAACACGATATCACAAAAGATTATGCGATATATTTTATATTCGTTTTC
TCCTTCAACACGGACCATGTCATTCATTTCAGCAACTCAACCGTAGATGA
CACTACTCACGATACGTTCGAGGGCGCTGCGCGTGGGCTGGGTACTGTTT
CCGGCAACAAAGAGTTCGGTCTGCGTATGCAAGAGCCAGCTTTGTTCAGA
ACCGCCTGCCGCCTTCGTGCCCTCTTCGTTACATTGATCCTCCACGGGGC
TCCAGCCGCTGAGTTACAGGAACAATGTCAACACGATATCACAAAAGATT
AT
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