mRNA_H-paniculata_contig5873.13488.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE) HSP 1 Score: 125 bits (313), Expect = 3.980e-32 Identity = 73/155 (47.10%), Postives = 86/155 (55.48%), Query Frame = 1
Query: 1 MFICAVPRRDPSRDLDGKIGIWCVCVIKQAQRNS-------------AWRERG----------QQCEFDVTINAEWYQEWYKDSFLPALKENIP*------------ATLPTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
M I A R DP+ D DGKIGIW +CVI+ AQR+S WRE ++ EFD TI+AEWY++WY D LPA+KE +P A+ TGK P LN G GW V LVTQPAQSP+LNINDLG F SLK
Sbjct: 195 MVIVANARPDPAHDFDGKIGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLK 349
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: I6THG9_PSEMU (Tranposase n=1 Tax=Pseudo-nitzschia multiseries TaxID=37319 RepID=I6THG9_PSEMU) HSP 1 Score: 88.6 bits (218), Expect = 4.150e-18 Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 1
Query: 1 MFICAV--PRRDPSRD--LDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDV-TINAEWYQEWYKDSFLPALKENIP*A------------TLPTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+CAV PR D R+ DGKIGIW V + AQRNS R RG ++ ++NA YQ+ + LPA++E P P + + E R+ GWN+ + TQP SP+ N+ DLGFF S++
Sbjct: 272 MFLCAVARPRHDADRNAGFDGKIGIWPFVVKEPAQRNSVNRPRGTMVTKNIPSVNAAEYQKMMLEKVLPAIQEKFPVCWKSRPIFIQEDNAKPHHLRSRAAVREAAREAGWNITVTTQPPNSPDFNVLDLGFFASIQ 408
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 79.7 bits (195), Expect = 5.270e-15 Identity = 47/135 (34.81%), Postives = 73/135 (54.07%), Query Frame = 1
Query: 1 MFICAV--PRRDPS--RDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*---ATLPTGKDAP--------PKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+CAV PR D + + DGK+G+W + A+R S R+RG +T+ Y+ + D +PA++ P AT+ +D P++ GR GWN+ L+ QPAQSP+ N+ DLGFF +++
Sbjct: 209 MFLCAVARPRHDSAHRKMWDGKVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLMAQPAQSPDFNVLDLGFFNAIQ 343
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A397C8F5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397C8F5_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 5.700e-14 Identity = 49/140 (35.00%), Postives = 68/140 (48.57%), Query Frame = 1
Query: 1 MFICAV--PRRDPSRDL--DGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPTGKDAP----------------PKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+ AV PR D R DGK+G+W ++ AQR S R+RG VT+ + Y+E+ +P +K A P +D P P + GR GW + LV QPA SP+ N+ DLGFF S++
Sbjct: 74 MFLTAVARPRFDYVRKTMWDGKLGMWPFVAVQPAQRTSKNRDRGTLVTTPVTVTKKVYREYLLQHVIPRIK-----AVWPGHRDQPIYIQQDNARPHVEVDDPAVVAAGRSDGWAIQLVAQPAMSPDFNVLDLGFFNSIQ 208
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: W4GGI5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGI5_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 7.490e-14 Identity = 49/135 (36.30%), Postives = 68/135 (50.37%), Query Frame = 1
Query: 1 MFICAV--PRRDPSRDL--DGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPT----GKDAPP-------KLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+CAV PR D R + DGKIG+W + K A R S R+RG +T+ Y+ D +PA++ P T +A P ++ R GWN+ LV QPA SPN N+ DLGFF +++
Sbjct: 142 MFLCAVARPRFDFGRRVMWDGKIGLWPIVETKVAARRSKNRDRGTPVTVPMTVTKPIYRRLLVDKVIPAIQAKWPGQRGGTIYLQQNNARPHVAVDDAEVVAASRKNGWNIQLVAQPAMSPNFNVLDLGFFNAIQ 276
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6A4Z9D8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z9D8_9STRA) HSP 1 Score: 73.9 bits (180), Expect = 4.320e-13 Identity = 45/135 (33.33%), Postives = 69/135 (51.11%), Query Frame = 1
Query: 1 MFICAV--PRRDP--SRDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*A-----------TLPTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+ AV PR D R DG+IG+W + A R+S R+RG T+ + Y+ + D +PA++ P + P P + GR GGW ++L +QPAQSP+LN+ DLG+F +++
Sbjct: 84 MFLTAVARPRYDARNKRMWDGRIGMWPFVKTRPALRSSKNRKRGDDVTEPFTVTRDVYRSFLIDKVIPAVRSKWPSSKKNQIWIQQDNAKPHVSVNDPAVVAAGRQGGWTISLCSQPAQSPDLNVLDLGYFNAIQ 218
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A2P4X320_9STRA (Uncharacterized protein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X320_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 9.960e-13 Identity = 48/137 (35.04%), Postives = 70/137 (51.09%), Query Frame = 1
Query: 1 MFICAVPRRDPSRD----LDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDV-TINAEWYQEWYKDSFLPALKENIP*AT-----LPTGKDAPPKLNEL-------GRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+ AV R +RD +GKIGIW + A R S +RERG+ C+ ++ ++ Y+ + D +PA K N P L +A P L+ G +G WN+ L+ QP SP++N DLG F SL+
Sbjct: 199 MFLAAVARTRYNRDGELVWNGKIGIWPLTEEYVALRRSRYRERGETCQRNIESVTRAVYKTFLLDDVIPATKANWPRREKWRPILIQQDNAKPHLSPFDPDIVAAGTEGEWNIRLLFQPPNSPDMNCLDLGLFASLQ 335
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6A5ATA6_9STRA (HTH_Tnp_Tc3_2 domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ATA6_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 1.270e-12 Identity = 46/141 (32.62%), Postives = 67/141 (47.52%), Query Frame = 1
Query: 1 MFICAV--PRRDPSRDL--DGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPTGKDAPP-----------------KLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+ AV PR D +R DGK+G+W ++ AQR S R RG + + +Y+++ D +PA+K+ P G A P + G GW + LV QPA SP+ N+ DLGFF S++
Sbjct: 209 MFLTAVARPRFDYARKTMWDGKVGMWPFVAVRPAQRKSKNRARGALITTPIVVTKPFYRQYLLDHVIPAIKQAWP------GPRAHPIYIQQDNARPHVEVDDAAVTAAGCSDGWKIQLVAQPAMSPDFNVLDLGFFNSIQ 343
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A6G0WM27_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WM27_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.590e-12 Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1
Query: 1 MFICAV--PRRDPSRD--LDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATL-----------PTGKDAPPKLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+ AV PR D + + DGK+G+W + + A+R S R R +++ +E Y + + LPA+K + P K + N++G GWNV L QPA SP+ N+ DLGFF S++
Sbjct: 218 MFLAAVARPRHDEATNQFFDGKLGMWPFVIQEPAKRTSKNRARDTLISTPISVTSEVYFDMLVSNVLPAIKRKMSFMKNSKIFIQQDNAGPHSKSVNHRFNQVGSYDGWNVALKNQPANSPDFNVLDLGFFNSIQ 352
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Match: A0A485KDC6_9STRA (Aste57867_3131 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KDC6_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.980e-12 Identity = 48/141 (34.04%), Postives = 69/141 (48.94%), Query Frame = 1
Query: 1 MFICAV--PRRDPS--RDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINAEWYQEWYKDSFLPALKENIP*ATLPTGKDAPP-----------------KLNELGRDGGWNVNLVTQPAQSPNLNINDLGFFVSLK 360
MF+ AV PR D + R DGKIG+W + AQR S RERG VT+ + Y+E+ + +P +K+ P G+ + P + G GW++ LV QPA SP+ N+ DLGFF S++
Sbjct: 209 MFLTAVARPRYDYTQRRMWDGKIGMWPFVSVVPAQRKSKNRERGTPVTTPVTVTKKVYREYLLEHVIPTIKKVWP------GRRSHPIYIQQDNARPHVEVDDAAVTLAGHSDGWSIQLVAQPAMSPDFNVLDLGFFNSIQ 343 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5873.13488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5873.13488.1 >prot_H-paniculata_contig5873.13488.1 ID=prot_H-paniculata_contig5873.13488.1|Name=mRNA_H-paniculata_contig5873.13488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=72bp MFICAVPRRDPSRDLDGKIGIWCVCVIKQAQRNSAWRERGQQCEFDVTINback to top mRNA from alignment at H-paniculata_contig5873:8735..9130- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5873.13488.1 ID=mRNA_H-paniculata_contig5873.13488.1|Name=mRNA_H-paniculata_contig5873.13488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=396bp|location=Sequence derived from alignment at H-paniculata_contig5873:8735..9130- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5873:8735..9130- >mRNA_H-paniculata_contig5873.13488.1 ID=mRNA_H-paniculata_contig5873.13488.1|Name=mRNA_H-paniculata_contig5873.13488.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=432bp|location=Sequence derived from alignment at H-paniculata_contig5873:8735..9130- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |