mRNA_H-paniculata_contig58722.13487.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58722.13487.1
Unique NamemRNA_H-paniculata_contig58722.13487.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6A3DBR6_9STRA (Uncharacterized protein n=6 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3DBR6_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-10
Identity = 38/111 (34.23%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQGLTVCLKEEGAAIALPNGSDLLCRKIGE 330
            W+ DSGATAHMTP  K +F+Y+   SN+ VT+A+G+ + + G G + +   D   +       V ++PGLD  LLS+  + ++G++V L+++   I   + +    +KIG+
Sbjct:   28 WLIDSGATAHMTPHRKDLFEYKDLDSNIEVTIADGKRIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVELQKKSCTIWNKSKAIASGKKIGK 135
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BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5JEW4_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEW4_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 5.050e-10
Identity = 42/107 (39.25%), Postives = 52/107 (48.60%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQGLTVCLKEEGAAIALPNGSDLLCRK 321
            +VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    R         RVAHVP LD NL+SL  +   G       +   + L  G   +CRK
Sbjct:  187 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTPNKHE-LELERGEGRVCRK 291
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BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5JXF7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXF7_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 6.840e-10
Identity = 38/82 (46.34%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:    4 VADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQG 249
            VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    RG        RVAHVP LD NL+SL  +   G
Sbjct:  396 VADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRGGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 476
[Close]
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6A3HCV0_9STRA (CCHC-type domain-containing protein n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HCV0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 1.090e-9
Identity = 38/111 (34.23%), Postives = 66/111 (59.46%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETC-SNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQGLTVCLKEEGAAIALPNGSDLLCRKIGE 330
            W+ DSGATAHMTP  K +F+Y+   SN+ VT+A+G+ + + G G + +   D   +       V ++PGLD  LLS+  + ++G++V L+++   I   + +    +KIG+
Sbjct:  245 WLIDSGATAHMTPHRKDLFEYKDLDSNIEVTIADGKRIRVVGTGSVRLTGIDGKRIKMID---VLYIPGLDRQLLSVSRLAERGMSVELQKKSCTIWNKSKAIASGKKIGK 352
[Close]
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5KX24_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX24_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 2.370e-9
Identity = 42/102 (41.18%), Postives = 50/102 (49.02%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQGL-TVCLKEEGAAIALPNGS 303
            +VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    R         RVAHVP LD NL+SL  +   G  T  L E    +    GS
Sbjct:  385 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDGFETKTLNEHELELERRGGS 485
[Close]
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5L142_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L142_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.010e-9
Identity = 37/83 (44.58%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQG 249
            +VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    R         RVAHVP LD NL+SL  +   G
Sbjct:  234 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 315
[Close]
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5KGB7_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGB7_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.150e-9
Identity = 37/83 (44.58%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQG 249
            +VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    R         RVAHVP LD NL+SL  +   G
Sbjct:  326 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 407
[Close]
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5J894_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J894_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.280e-9
Identity = 37/83 (44.58%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQG 249
            +VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    R         RVAHVP LD NL+SL  +   G
Sbjct:  382 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 463
[Close]
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.280e-9
Identity = 37/83 (44.58%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQG 249
            +VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    R         RVAHVP LD NL+SL  +   G
Sbjct:  369 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 450
[Close]
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 3.290e-9
Identity = 37/83 (44.58%), Postives = 44/83 (53.01%), Query Frame = 1 
Query:    1 WVADSGATAHMTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSFSRVAHVPGLDINLLSLQIVVKQG 249
            +VAD+GAT HM  ++     YE C    V VA GET PI GYG + V    R         RVAHVP LD NL+SL  +   G
Sbjct:  382 YVADTGATTHMFANSDGFVRYEECDRR-VRVAAGETFPIVGYGDVTVTLSSRDGTTDLLLKRVAHVPRLDYNLVSLTSLFDDG 463
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58722.13487.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6A3DBR6_9STRA1.680e-1034.23Uncharacterized protein n=6 Tax=Phytophthora fraga... [more]
A0A6H5JEW4_9PHAE5.050e-1039.25CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5JXF7_9PHAE6.840e-1046.34Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3HCV0_9STRA1.090e-934.23CCHC-type domain-containing protein n=3 Tax=Phytop... [more]
A0A6H5KX24_9PHAE2.370e-941.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L142_9PHAE3.010e-944.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KGB7_9PHAE3.150e-944.58CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J894_9PHAE3.280e-944.58Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.280e-944.58Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN00_9PHAE3.290e-944.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58722contigH-paniculata_contig58722:146..490 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size345
Cds size315
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.3895643-CDS-H-paniculata_contig58722:145..4601622930640.3895643-CDS-H-paniculata_contig58722:145..460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58722 146..460 -
1691481385.1024656-CDS-H-paniculata_contig58722:145..4601691481385.1024656-CDS-H-paniculata_contig58722:145..460Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58722 146..460 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.4035463-UTR-H-paniculata_contig58722:460..4901622930640.4035463-UTR-H-paniculata_contig58722:460..490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58722 461..490 -
1691481385.110784-UTR-H-paniculata_contig58722:460..4901691481385.110784-UTR-H-paniculata_contig58722:460..490Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58722 461..490 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58722.13487.1prot_H-paniculata_contig58722.13487.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58722 146..460 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58722.13487.1

>prot_H-paniculata_contig58722.13487.1 ID=prot_H-paniculata_contig58722.13487.1|Name=mRNA_H-paniculata_contig58722.13487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=105bp
MTPSNKLMFDYETCSNLFVTVANGETLPIEGYGKMLVWTKDRGEMHKFSF
SRVAHVPGLDINLLSLQIVVKQGLTVCLKEEGAAIALPNGSDLLCRKIGE
HEFLV
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mRNA from alignment at H-paniculata_contig58722:146..490-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58722.13487.1 ID=mRNA_H-paniculata_contig58722.13487.1|Name=mRNA_H-paniculata_contig58722.13487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=345bp|location=Sequence derived from alignment at H-paniculata_contig58722:146..490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCATCTAACAAATT
AATGTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGGTGGCTAACG
GCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAG
GATCGGGGCGAGATGCACAAATTCAGCTTCAGTCGTGTAGCGCATGTTCC
GGGCCTGGACATAAACTTGCTTTCCCTACAGATTGTAGTGAAGCAGGGAC
TTACTGTCTGTTTGAAGGAGGAGGGTGCAGCAATTGCACTACCTAATGGG
AGCGATCTTTTGTGCAGAAAAATCGGTGAACATGAGTTTTTGGTA
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Coding sequence (CDS) from alignment at H-paniculata_contig58722:146..490-

>mRNA_H-paniculata_contig58722.13487.1 ID=mRNA_H-paniculata_contig58722.13487.1|Name=mRNA_H-paniculata_contig58722.13487.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=630bp|location=Sequence derived from alignment at H-paniculata_contig58722:146..490- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGACTCCATCTAACAAATTAATGTTTGATTACGAAACCTGCAGTAATTT
GTTTGTGACGGTGGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTA
AGATGTTGGTATGGACGAAGGATCGGGGCGAGATGCACAAATTCAGCTTC
AGTCGTGTAGCGCATGTTCCGGGCCTGGACATAAACTTGCTTTCCCTACA
GATTGTAGTGAAGCAGGGACTTACTGTCTGTTTGAAGGAGGAGGGTGCAG
CAATTGCACTACCTAATGGGAGCGATCTTTTGTGCAGAAAAATCGGTGAA
CATGAGTTTTTGGTAATGACTCCATCTAACAAATTAATGTTTGATTACGA
AACCTGCAGTAATTTGTTTGTGACGGTGGCTAACGGCGAAACACTTCCGA
TTGAGGGATATGGTAAGATGTTGGTATGGACGAAGGATCGGGGCGAGATG
CACAAATTCAGCTTCAGTCGTGTAGCGCATGTTCCGGGCCTGGACATAAA
CTTGCTTTCCCTACAGATTGTAGTGAAGCAGGGACTTACTGTCTGTTTGA
AGGAGGAGGGTGCAGCAATTGCACTACCTAATGGGAGCGATCTTTTGTGC
AGAAAAATCGGTGAACATGAGTTTTTGGTA
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