prot_H-paniculata_contig58721.13486.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig58721.13486.1
Unique Nameprot_H-paniculata_contig58721.13486.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length61
Homology
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A6H5HV20_9HEMI (Integrase catalytic domain-containing protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HV20_9HEMI)

HSP 1 Score: 81.6 bits (200), Expect = 2.230e-17
Identity = 33/60 (55.00%), Postives = 45/60 (75.00%), Query Frame = 0
Query:    2 ARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            AR+ +  AN+G+ +WG+ V +A Y +NR+P+R  NG+TPYE WHGE P+L HL VFGC A
Sbjct:  105 ARSLLADANLGKEFWGKAVVTACYLMNRSPSRALNGKTPYEIWHGEQPDLSHLCVFGCPA 164          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A0A9W1E1_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9W1E1_LYGHE)

HSP 1 Score: 80.5 bits (197), Expect = 3.120e-16
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 0
Query:    2 ARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            AR+ M  A++G+ YWGE V +AVY LNR+P++   G+TPYE W GE P L HLR+FGC A
Sbjct:   35 ARSMMFDADLGKEYWGESVATAVYLLNRSPSKRLPGKTPYEMWTGEKPVLTHLRIFGCEA 94          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: UPI000DF4E0C1 (uncharacterized protein LOC112892555 n=1 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4E0C1)

HSP 1 Score: 80.1 bits (196), Expect = 4.270e-16
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            MAR  + +  M   +WGE V +AVY LNRAPTR   G+TPYE WH + P +DHLR FGC A
Sbjct:  574 MARCMLKSKKMPSEFWGEAVHTAVYLLNRAPTRSLKGKTPYEAWHKKKPSVDHLRTFGCVA 634          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: I1NXJ5_ORYGL (Integrase catalytic domain-containing protein n=1 Tax=Oryza glaberrima TaxID=4538 RepID=I1NXJ5_ORYGL)

HSP 1 Score: 77.4 bits (189), Expect = 1.120e-15
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            MAR  +    M   +WGE V +AVY LNR+PT+  +GRTPYE WHG  P + HLRVFGC A
Sbjct:  131 MARALLKQRRMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGRKPAVSHLRVFGCLA 191          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A453NGZ9_AEGTS (Integrase catalytic domain-containing protein n=1 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NGZ9_AEGTS)

HSP 1 Score: 78.6 bits (192), Expect = 1.480e-15
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            MAR+ M +  M  ++WGE V +AVY LNRAPT+   G TPYE W+G  P +DHLR FGC A
Sbjct:  356 MARSMMKSKGMPGKFWGEAVNTAVYLLNRAPTKSVVGMTPYEAWYGHKPAVDHLRTFGCIA 416          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A453NGN6_AEGTS (Uncharacterized protein n=3 Tax=Aegilops tauschii subsp. strangulata TaxID=200361 RepID=A0A453NGN6_AEGTS)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-15
Identity = 34/61 (55.74%), Postives = 42/61 (68.85%), Query Frame = 0
Query:    1 MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            MAR+ M +  M  ++WGE V +AVY LNRAPT+   G TPYE W+G  P +DHLR FGC A
Sbjct:  401 MARSMMKSKGMPGKFWGEAVNTAVYLLNRAPTKSVVGMTPYEAWYGHKPAVDHLRTFGCIA 461          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 78.6 bits (192), Expect = 1.490e-15
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 0
Query:    2 ARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            AR+ +  A +G+ +W E + +A Y +NR+P+R    RTPYE WHGE P+L HLRVFGC+A
Sbjct:  569 ARSMLADAKLGKEFWAEAIVTACYLINRSPSRALGERTPYEVWHGEKPDLSHLRVFGCSA 628          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A6H5HIK9_9HEMI (Uncharacterized protein n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5HIK9_9HEMI)

HSP 1 Score: 77.8 bits (190), Expect = 2.780e-15
Identity = 31/59 (52.54%), Postives = 42/59 (71.19%), Query Frame = 0
Query:    3 RTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            R  +  A +G+ YWGE V +AVY +NR P++   G+TP+E W GE P+L HLR+FGCTA
Sbjct:  568 RAMLSDAQLGKEYWGEAVATAVYPINRTPSKRLPGKTPFEMWTGERPDLSHLRIFGCTA 626          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: C7IZA8_ORYSJ (Os02g0163901 protein n=1 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=C7IZA8_ORYSJ)

HSP 1 Score: 77.4 bits (189), Expect = 3.780e-15
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            MAR  +    M   +WGE V +AVY LNR+PT+  +GRTPYE WHG  P + HLRVFGC A
Sbjct:  537 MARALLKQRGMPAIFWGEAVVTAVYILNRSPTKALDGRTPYEAWHGRKPAVSHLRVFGCLA 597          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: Q2QW16_ORYSJ (Retrotransposon protein, putative, unclassified n=6 Tax=Magnoliopsida TaxID=3398 RepID=Q2QW16_ORYSJ)

HSP 1 Score: 77.4 bits (189), Expect = 3.820e-15
Identity = 34/61 (55.74%), Postives = 41/61 (67.21%), Query Frame = 0
Query:    1 MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 61
            MAR  +    M   +WGEVV +A Y LNR+PT+  +GRTPYE WHG  P + HLRVFGC A
Sbjct: 1010 MARALLKQRGMPAIFWGEVVVTAAYILNRSPTKALDGRTPYEAWHGRKPAVSHLRVFGCLA 1070          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5HV20_9HEMI2.230e-1755.00Integrase catalytic domain-containing protein n=1 ... [more]
A0A0A9W1E1_LYGHE3.120e-1656.67Retrovirus-related Pol polyprotein from transposon... [more]
UPI000DF4E0C14.270e-1655.74uncharacterized protein LOC112892555 n=1 Tax=Panic... [more]
I1NXJ5_ORYGL1.120e-1555.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A453NGZ9_AEGTS1.480e-1555.74Integrase catalytic domain-containing protein n=1 ... [more]
A0A453NGN6_AEGTS1.490e-1555.74Uncharacterized protein n=3 Tax=Aegilops tauschii ... [more]
A0A6H5GGZ1_9HEMI1.490e-1551.67Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5HIK9_9HEMI2.780e-1552.54Uncharacterized protein n=1 Tax=Nesidiocoris tenui... [more]
C7IZA8_ORYSJ3.780e-1555.74Os02g0163901 protein n=1 Tax=Oryza sativa subsp. j... [more]
Q2QW16_ORYSJ3.820e-1555.74Retrotransposon protein, putative, unclassified n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 5..61
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 5..61
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 10..49

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58721contigH-paniculata_contig58721:1..183 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58721.13486.1mRNA_H-paniculata_contig58721.13486.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig58721 1..621 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig58721.13486.1 ID=prot_H-paniculata_contig58721.13486.1|Name=mRNA_H-paniculata_contig58721.13486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPE
LDHLRVFGCTA
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR039537Retrotran_Ty1/copia-like
IPR012337RNaseH-like_sf