mRNA_H-paniculata_contig58721.13486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A182GDX6_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDX6_AEDAL) HSP 1 Score: 153 bits (387), Expect = 9.700e-43 Identity = 77/200 (38.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query: 16 CSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
C C + KT + P + R+T P++LVHTD+ GPV+ S R+ + +DDYSR C +Y L++KSE ++++ G + K +RSDQGG Y+GK L ++ +++A Y P QNG RS+ EM R + A + +RYW E + +AVY N PT+P + TP+E W G P++DHL++FGC+A
Sbjct: 50 CECCLQGKTPRTPFPSESQSRSTAPMDLVHTDVCGPVEMSSVSGYRYFMTVIDDYSRFCVLYLLKEKSEVATRIEEYVAYAKTLFGRKPKAIRSDQGGEYSGKRLRAFYKREGISAQYTAGYSPQQNGIAERKNRSLIEMVRCMLFDAQLEQRYWAEALSTAVYLQNVLPTKPLDV-TPFELWTGVKPKVDHLKIFGCSA 248
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY) HSP 1 Score: 160 bits (406), Expect = 4.390e-42 Identity = 85/201 (42.29%), Postives = 117/201 (58.21%), Query Frame = 1
Query: 13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
+C AC K K +Q E R R PLE+VHTDIAGP D S R+ + F+DD+SR C +Y L++KSEAL L++F+ + +G +K LRSD+GG YT K ++ + +A Y P QNG R+I +MAR+ + + R +W E VR AVY LNR PT+ TP E W G+ P + HL++FGC A
Sbjct: 363 LCEACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIA 563
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A4Y1RBJ0_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBJ0_PRUDU) HSP 1 Score: 149 bits (375), Expect = 2.030e-41 Identity = 77/198 (38.89%), Postives = 114/198 (57.58%), Query Frame = 1
Query: 13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
VCS C K + +K R R + PLEL+H+DI GP+ + R+ + F+DD++RMC V+ L+ KS+A K+F+ V +G +IK LRSD+GG YT ++ E++ + AY P QNG R++ EMAR M + ++W E V +AVY NR+PT + TP+EK+ G P + HLR+FG
Sbjct: 14 VCSGCAVSKNHRSSFDKERAWRASHPLELIHSDICGPMQTITLGGNRYFLTFIDDHTRMCWVFFLQHKSQAFNIFKRFKSMVELQSGYQIKKLRSDRGGEYTSLDFSKFCEEVGLERQLTVAYSPQQNGVAERKNRTVMEMARAMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNSTPFEKFSGRKPGVKHLRIFG 211
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 156 bits (394), Expect = 1.710e-40 Identity = 83/201 (41.29%), Postives = 115/201 (57.21%), Query Frame = 1
Query: 13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
+C AC K K +Q + R R LE+VHTDIAGP D S R+ + F+DD+SR C +Y L++KSEAL LK+F+ + +G +K LRSD+GG YT K ++ + +A Y P QNG R+I +MAR+ + + R +W E VR AVY LNR PT+ TP E W G+ P + H ++FGC A
Sbjct: 364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIA 564
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF) HSP 1 Score: 149 bits (375), Expect = 2.270e-40 Identity = 81/202 (40.10%), Postives = 112/202 (55.45%), Query Frame = 1
Query: 1 GKLGVCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
GK VC C K + P K R E LEL+HTD+ GP+D S R+ I+F+DD++RM VY +RQKSE K+F+ V + +G IK LRSD+G YT K N E++ + Y P QNG ++I EMA++ M + + +W E V +AVY NR PT +TP+E W G P ++HL+VFG
Sbjct: 10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH) HSP 1 Score: 155 bits (393), Expect = 2.350e-40 Identity = 77/201 (38.31%), Postives = 119/201 (59.20%), Query Frame = 1
Query: 13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
VC C K K ++ + K ++T+ L+LVHTDI GP++ S R+ + F+DD+SR C Y L +KSE K+F+ +V R +G ++ CLRSD+GG Y + ++ +++ +AAY P QNG RS+ M R ++ ++ R++W E V+ AVY LNR+P++ N TP EKW P ++HLR+FG A
Sbjct: 470 VCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLA 670
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF) HSP 1 Score: 149 bits (376), Expect = 7.030e-40 Identity = 82/202 (40.59%), Postives = 112/202 (55.45%), Query Frame = 1
Query: 1 GKLGVCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
GK VC C K + P K R E LEL+HTDI GP+D S R+ I+F+DD++RM VY +RQKSE K+F+ V + +G IK LRSD+G YT K N E++ + Y P QNG ++I EMA++ M + + +W E V +AVY NR PT +TP+E W G P ++HL+VFG
Sbjct: 10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTMAIPNKTPFEAWSGRRPSVNHLKVFG 211
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR) HSP 1 Score: 151 bits (381), Expect = 8.310e-40 Identity = 82/201 (40.80%), Postives = 110/201 (54.73%), Query Frame = 1
Query: 13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
VC C K K S++P R+T+ L+LVHTD+ GP+ K+F R+ + F+DDYSR Y L KSE + E V RIK LRSD+G Y K + Q+F+A+Y P QNG R+I E AR + A + +YW E V++AVY NR+ T+ TPYE W G+ P+L +LRVFGC A
Sbjct: 150 VCEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQA 350
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464) HSP 1 Score: 153 bits (387), Expect = 1.440e-39 Identity = 79/201 (39.30%), Postives = 113/201 (56.22%), Query Frame = 1
Query: 13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
+C C K ++ K R +PLEL+HTDI GP+ S + ++F+DD+SR VY L+QKSEA K+F+ V + +G+ IK +RSD+GG +T + N K + + P QNG R+I +MAR+ + + N+ + +W E V AVY LNR+PTR G+TP E W G P + HLRVFG A
Sbjct: 149 LCEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKA 349
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A8J5HFT2_ZINOF (Integrase catalytic domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HFT2_ZINOF) HSP 1 Score: 149 bits (375), Expect = 1.850e-39 Identity = 81/202 (40.10%), Postives = 112/202 (55.45%), Query Frame = 1
Query: 1 GKLGVCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
GK VC C K + P K R E LEL+HTD+ GP+D S R+ I+F+DD++RM VY +RQKSE K+F+ V + +G IK LRSD+G YT K N E++ + Y P QNG ++I EMA++ M + + +W E V +AVY NR PT +TP+E W G P ++HL+VFG
Sbjct: 10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58721.13486.1 >prot_H-paniculata_contig58721.13486.1 ID=prot_H-paniculata_contig58721.13486.1|Name=mRNA_H-paniculata_contig58721.13486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPEback to top mRNA from alignment at H-paniculata_contig58721:1..621- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58721.13486.1 ID=mRNA_H-paniculata_contig58721.13486.1|Name=mRNA_H-paniculata_contig58721.13486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig58721:1..621- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58721:1..621- >mRNA_H-paniculata_contig58721.13486.1 ID=mRNA_H-paniculata_contig58721.13486.1|Name=mRNA_H-paniculata_contig58721.13486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig58721:1..621- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |