mRNA_H-paniculata_contig58721.13486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58721.13486.1
Unique NamemRNA_H-paniculata_contig58721.13486.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A182GDX6_AEDAL (Integrase catalytic domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDX6_AEDAL)

HSP 1 Score: 153 bits (387), Expect = 9.700e-43
Identity = 77/200 (38.50%), Postives = 117/200 (58.50%), Query Frame = 1
Query:   16 CSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
            C  C + KT + P     + R+T P++LVHTD+ GPV+  S    R+ +  +DDYSR C +Y L++KSE    ++++        G + K +RSDQGG Y+GK L    ++     +++A Y P QNG      RS+ EM R  +  A + +RYW E + +AVY  N  PT+P +  TP+E W G  P++DHL++FGC+A
Sbjct:   50 CECCLQGKTPRTPFPSESQSRSTAPMDLVHTDVCGPVEMSSVSGYRYFMTVIDDYSRFCVLYLLKEKSEVATRIEEYVAYAKTLFGRKPKAIRSDQGGEYSGKRLRAFYKREGISAQYTAGYSPQQNGIAERKNRSLIEMVRCMLFDAQLEQRYWAEALSTAVYLQNVLPTKPLDV-TPFELWTGVKPKVDHLKIFGCSA 248          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A6A3BY51_HIBSY (Histone acetyltransferase n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3BY51_HIBSY)

HSP 1 Score: 160 bits (406), Expect = 4.390e-42
Identity = 85/201 (42.29%), Postives = 117/201 (58.21%), Query Frame = 1
Query:   13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
            +C AC K K  +Q  E  R  R   PLE+VHTDIAGP D  S    R+ + F+DD+SR C +Y L++KSEAL  L++F+    + +G  +K LRSD+GG YT K      ++     + +A Y P QNG      R+I +MAR+ +    + R +W E VR AVY LNR PT+     TP E W G+ P + HL++FGC A
Sbjct:  363 LCEACIKGKQHRQSFEVGRSWRARRPLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIA 563          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A4Y1RBJ0_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RBJ0_PRUDU)

HSP 1 Score: 149 bits (375), Expect = 2.030e-41
Identity = 77/198 (38.89%), Postives = 114/198 (57.58%), Query Frame = 1
Query:   13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
            VCS C   K  +   +K R  R + PLEL+H+DI GP+   +    R+ + F+DD++RMC V+ L+ KS+A    K+F+  V   +G +IK LRSD+GG YT         ++  E++ + AY P QNG      R++ EMAR  M    +  ++W E V +AVY  NR+PT   +  TP+EK+ G  P + HLR+FG
Sbjct:   14 VCSGCAVSKNHRSSFDKERAWRASHPLELIHSDICGPMQTITLGGNRYFLTFIDDHTRMCWVFFLQHKSQAFNIFKRFKSMVELQSGYQIKKLRSDRGGEYTSLDFSKFCEEVGLERQLTVAYSPQQNGVAERKNRTVMEMARAMMHEKKIPLKFWAEAVNTAVYLQNRSPTSALDNSTPFEKFSGRKPGVKHLRIFG 211          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY)

HSP 1 Score: 156 bits (394), Expect = 1.710e-40
Identity = 83/201 (41.29%), Postives = 115/201 (57.21%), Query Frame = 1
Query:   13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
            +C AC K K  +Q  +  R  R    LE+VHTDIAGP D  S    R+ + F+DD+SR C +Y L++KSEAL  LK+F+    + +G  +K LRSD+GG YT K      ++     + +A Y P QNG      R+I +MAR+ +    + R +W E VR AVY LNR PT+     TP E W G+ P + H ++FGC A
Sbjct:  364 LCEACIKGKQHRQSFKVGRSGRAQRLLEIVHTDIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIA 564          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A8J5C7R4_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5C7R4_ZINOF)

HSP 1 Score: 149 bits (375), Expect = 2.270e-40
Identity = 81/202 (40.10%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 GKLGVCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
            GK  VC  C   K  + P  K    R  E LEL+HTD+ GP+D  S    R+ I+F+DD++RM  VY +RQKSE     K+F+  V + +G  IK LRSD+G  YT K   N       E++ +  Y P QNG      ++I EMA++ M    + + +W E V +AVY  NR PT     +TP+E W G  P ++HL+VFG
Sbjct:   10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: Q9C7Y1_ARATH (Copia-type polyprotein, putative; 28768-32772 n=3 Tax=Arabidopsis thaliana TaxID=3702 RepID=Q9C7Y1_ARATH)

HSP 1 Score: 155 bits (393), Expect = 2.350e-40
Identity = 77/201 (38.31%), Postives = 119/201 (59.20%), Query Frame = 1
Query:   13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
            VC  C K K  ++ + K    ++T+ L+LVHTDI GP++  S    R+ + F+DD+SR C  Y L +KSE     K+F+ +V R +G ++ CLRSD+GG Y  +      ++   +++ +AAY P QNG      RS+  M R  ++  ++ R++W E V+ AVY LNR+P++  N  TP EKW    P ++HLR+FG  A
Sbjct:  470 VCDICLKGKQIRESIPKESAWKSTQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVERESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLTAAYTPQQNGVAERKNRSVMNMTRCMLMEMSVPRKFWPEAVQYAVYILNRSPSKALNDITPEEKWSSWKPSVEHLRIFGSLA 670          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A8J5MAE0_ZINOF (Integrase catalytic domain-containing protein n=1 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5MAE0_ZINOF)

HSP 1 Score: 149 bits (376), Expect = 7.030e-40
Identity = 82/202 (40.59%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 GKLGVCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
            GK  VC  C   K  + P  K    R  E LEL+HTDI GP+D  S    R+ I+F+DD++RM  VY +RQKSE     K+F+  V + +G  IK LRSD+G  YT K   N       E++ +  Y P QNG      ++I EMA++ M    + + +W E V +AVY  NR PT     +TP+E W G  P ++HL+VFG
Sbjct:   10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDICGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTMAIPNKTPFEAWSGRRPSVNHLKVFG 211          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A3S3RF48_9ACAR (Retrovirus-related Pol polyprotein from transposon TNT 1-94-like protein (Fragment) n=1 Tax=Dinothrombium tinctorium TaxID=1965070 RepID=A0A3S3RF48_9ACAR)

HSP 1 Score: 151 bits (381), Expect = 8.310e-40
Identity = 82/201 (40.80%), Postives = 110/201 (54.73%), Query Frame = 1
Query:   13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
            VC  C K K S++P       R+T+ L+LVHTD+ GP+  K+F   R+ + F+DDYSR    Y L  KSE      + E  V      RIK LRSD+G  Y  K      +     Q+F+A+Y P QNG      R+I E AR  +  A +  +YW E V++AVY  NR+ T+     TPYE W G+ P+L +LRVFGC A
Sbjct:  150 VCEGCAKGKMSRRPFPNTSTNRSTKTLQLVHTDVCGPMQTKTFSGKRYFLTFIDDYSRFTVCYLLEHKSEVYDKFVECEALVTNMTSNRIKMLRSDEGCEYRSKKFNAFCKGKGIIQQFTASYTPQQNGVAERMNRTIVEAARCMLQAAQLDNKYWDEAVQTAVYLQNRSSTKALTNITPYEAWFGKKPDLSNLRVFGCQA 350          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: UPI001F004464 (DDE-type integrase/transposase/recombinase n=1 Tax=Corynebacterium parakroppenstedtii TaxID=2828363 RepID=UPI001F004464)

HSP 1 Score: 153 bits (387), Expect = 1.440e-39
Identity = 79/201 (39.30%), Postives = 113/201 (56.22%), Query Frame = 1
Query:   13 VCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVD-KSFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFGCTA 594
            +C  C   K  ++   K    R  +PLEL+HTDI GP+   S     + ++F+DD+SR   VY L+QKSEA    K+F+  V + +G+ IK +RSD+GG +T +   N   K    +  +    P QNG      R+I +MAR+ + + N+ + +W E V  AVY LNR+PTR   G+TP E W G  P + HLRVFG  A
Sbjct:  149 LCEGCLLGKQFRKSFPKKSSSRAQKPLELIHTDICGPIKPSSLGKSNYFLLFIDDFSRKTWVYFLKQKSEAFEVFKKFKAAVEKESGLHIKAMRSDRGGEFTSREFQNFCEKHGIRRPLTVPRSPQQNGVAERKNRTILDMARSMLKSKNLPKEFWAEAVACAVYLLNRSPTRSVWGKTPQESWSGRKPGISHLRVFGSKA 349          
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Match: A0A8J5HFT2_ZINOF (Integrase catalytic domain-containing protein n=2 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5HFT2_ZINOF)

HSP 1 Score: 149 bits (375), Expect = 1.850e-39
Identity = 81/202 (40.10%), Postives = 112/202 (55.45%), Query Frame = 1
Query:    1 GKLGVCSACEKRKTSKQPVEKYREERTTEPLELVHTDIAGPVDK-SFRDCRFAIIFVDDYSRMCKVYTLRQKSEALWALKQFERDVARANGVRIKCLRSDQGG*YTGKPLGNSARKLASEQEFSAAYKPHQNG------RSIFEMARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPELDHLRVFG 585
            GK  VC  C   K  + P  K    R  E LEL+HTD+ GP+D  S    R+ I+F+DD++RM  VY +RQKSE     K+F+  V + +G  IK LRSD+G  YT K   N       E++ +  Y P QNG      ++I EMA++ M    + + +W E V +AVY  NR PT     +TP+E W G  P ++HL+VFG
Sbjct:   10 GKQHVCEGCAFGKQHRLPFPKGVSWRAKEKLELIHTDVCGPMDTLSHAQNRYFILFIDDHTRMTWVYFMRQKSEVFMIFKKFKSLVEKQSGCFIKTLRSDRGKEYTSKEFHNFCEDEGVERQLTVRYTPQQNGVTERKNQTIVEMAKSMMHEKGLPKIFWAEAVYTAVYLSNRCPTTAIPNKTPFEAWSGRRPSVNHLKVFG 211          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58721.13486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182GDX6_AEDAL9.700e-4338.50Integrase catalytic domain-containing protein n=1 ... [more]
A0A6A3BY51_HIBSY4.390e-4242.29Histone acetyltransferase n=2 Tax=Hibiscus syriacu... [more]
A0A4Y1RBJ0_PRUDU2.030e-4138.89Transposable element protein n=1 Tax=Prunus dulcis... [more]
A0A6A2WSU7_HIBSY1.710e-4041.29Integrase catalytic domain-containing protein n=2 ... [more]
A0A8J5C7R4_ZINOF2.270e-4040.10Integrase catalytic domain-containing protein n=1 ... [more]
Q9C7Y1_ARATH2.350e-4038.31Copia-type polyprotein, putative; 28768-32772 n=3 ... [more]
A0A8J5MAE0_ZINOF7.030e-4040.59Integrase catalytic domain-containing protein n=1 ... [more]
A0A3S3RF48_9ACAR8.310e-4040.80Retrovirus-related Pol polyprotein from transposon... [more]
UPI001F0044641.440e-3939.30DDE-type integrase/transposase/recombinase n=1 Tax... [more]
A0A8J5HFT2_ZINOF1.850e-3940.10Integrase catalytic domain-containing protein n=2 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58721contigH-paniculata_contig58721:1..621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score79.7
Seed ortholog evalue5.1e-13
Seed eggNOG ortholog15368.BRADI2G01640.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons2
Model size594
Cds size183
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58721.13486.1prot_H-paniculata_contig58721.13486.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58721 1..183 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.3128533-CDS-H-paniculata_contig58721:0..1831622930640.3128533-CDS-H-paniculata_contig58721:0..183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58721 1..183 -
1691481385.077564-CDS-H-paniculata_contig58721:0..1831691481385.077564-CDS-H-paniculata_contig58721:0..183Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58721 1..183 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930640.3315687-UTR-H-paniculata_contig58721:183..1981622930640.3315687-UTR-H-paniculata_contig58721:183..198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58721 184..198 -
1691481385.0870886-UTR-H-paniculata_contig58721:183..1981691481385.0870886-UTR-H-paniculata_contig58721:183..198Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58721 184..198 -
1622930640.348351-UTR-H-paniculata_contig58721:225..6211622930640.348351-UTR-H-paniculata_contig58721:225..621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58721 226..621 -
1691481385.0947452-UTR-H-paniculata_contig58721:225..6211691481385.0947452-UTR-H-paniculata_contig58721:225..621Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58721 226..621 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58721.13486.1

>prot_H-paniculata_contig58721.13486.1 ID=prot_H-paniculata_contig58721.13486.1|Name=mRNA_H-paniculata_contig58721.13486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=61bp
MARTSMITANMGRRYWGEVVRSAVYCLNRAPTRPHNGRTPYEKWHGETPE
LDHLRVFGCTA
back to top

mRNA from alignment at H-paniculata_contig58721:1..621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58721.13486.1 ID=mRNA_H-paniculata_contig58721.13486.1|Name=mRNA_H-paniculata_contig58721.13486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=621bp|location=Sequence derived from alignment at H-paniculata_contig58721:1..621- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAAGCTCGGTGTTTGCTCGGCGTGTGAGAAGAGGAAAACGTCGAAGCA GCCTGTAGAAAAGTATCGAGAGGAGCGGACGACCGAGCCATTGGAGCTGG TGCACACCGACATAGCCGGACCAGTGGACAAGTCCTTCAGAGATTGTCGC TTCGCCATCATCTTCGTCGACGACTACAGCAGAATGTGCAAAGTCTATAC CTTGCGACAAAAGTCGGAGGCGCTATGGGCCCTGAAGCAATTCGAGAGGG ATGTAGCGAGGGCAAACGGTGTGCGGATCAAGTGCCTTCGGTCGGATCAG GGAGGATAATATACTGGGAAGCCTTTAGGCAATTCTGCGCGGAAACTGGC ATCAGAGCAGGAGTTCTCTGCCGCCTACAAACCGCATCAAAATGGTGTGG CGGAGCGCAGCTAGCGCAGCTAGCGCAGTATTTTCGAGATGGCAAGAACC AGCATGATCACCGCCAACATGGGTCGTCGATATTGGGGGGAAGTGGTGCG CTCGGCAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCACAACGGAA GAACGCCGTACGAAAAATGGCACGGCGAGACGCCAGAGTTGGACCATCTT CGCGTCTTCGGCTGCACGGCG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig58721:1..621-

>mRNA_H-paniculata_contig58721.13486.1 ID=mRNA_H-paniculata_contig58721.13486.1|Name=mRNA_H-paniculata_contig58721.13486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=366bp|location=Sequence derived from alignment at H-paniculata_contig58721:1..621- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAGAACCAGCATGATCACCGCCAACATGGGTCGTCGATATTGGGG
GGAAGTGGTGCGCTCGGCAGTGTACTGCCTAAATCGCGCCCCGACGCGAC
CGCACAACGGAAGAACGCCGTACGAAAAATGGCACGGCGAGACGCCAGAG
TTGGACCATCTTCGCGTCTTCGGCTGCACGGCGATGGCAAGAACCAGCAT
GATCACCGCCAACATGGGTCGTCGATATTGGGGGGAAGTGGTGCGCTCGG
CAGTGTACTGCCTAAATCGCGCCCCGACGCGACCGCACAACGGAAGAACG
CCGTACGAAAAATGGCACGGCGAGACGCCAGAGTTGGACCATCTTCGCGT
CTTCGGCTGCACGGCG
back to top