mRNA_H-paniculata_contig5871.13483.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5871.13483.1
Unique NamemRNA_H-paniculata_contig5871.13483.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5871.13483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5871contigH-paniculata_contig5871:2831..3821 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size235
Cds size234
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930639.961044-CDS-H-paniculata_contig5871:2830..30161622930639.961044-CDS-H-paniculata_contig5871:2830..3016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 2831..3016 -
1691481384.924882-CDS-H-paniculata_contig5871:2830..30161691481384.924882-CDS-H-paniculata_contig5871:2830..3016Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 2831..3016 -
1622930639.973764-CDS-H-paniculata_contig5871:3773..38211622930639.973764-CDS-H-paniculata_contig5871:3773..3821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 3774..3821 -
1691481384.934484-CDS-H-paniculata_contig5871:3773..38211691481384.934484-CDS-H-paniculata_contig5871:3773..3821Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5871 3774..3821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5871.13483.1prot_H-paniculata_contig5871.13483.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5871 2831..3821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5871.13483.1

>prot_H-paniculata_contig5871.13483.1 ID=prot_H-paniculata_contig5871.13483.1|Name=mRNA_H-paniculata_contig5871.13483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=78bp
SGGNTTIATALLLELQENNVKFLVELCIEGLDERSARKALQDARGNAQYV
AHHFQSESEKRQHQAQVAERMAVMESVL
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mRNA from alignment at H-paniculata_contig5871:2831..3821-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5871.13483.1 ID=mRNA_H-paniculata_contig5871.13483.1|Name=mRNA_H-paniculata_contig5871.13483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=991bp|location=Sequence derived from alignment at H-paniculata_contig5871:2831..3821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGGTGGCAACACTACAATCGCAACCGCTCTCTTGTTGGAATTGCAGGT
GCGGACTAAAATGATTGCCATGGCCGTGGATATCAAGAATAGGAATTCCT
GAAACATGTTTTACAATCTCTGACGCTTGATAATGCGGTAAACATTGTCG
ATAGCCGGCCAGTCTTAAGCCACAAGCCACCAGAATAGCTCGAGATTATG
ATTTTTTCTCATCCTTGAGCAGGTCTTGGCCCGTTAGGTTGGCGGCGTCG
ATATCCGATTCGCCTCTCCCATGCTGCCCCGAATTACGATATACCAGTCA
GAGTGAACTGCATTGAAGGGAATACTATTGATTCATTTAGTTAGGGTCTC
GAGTCTCCTCCGAGAGCGATCGTTAATTTTTCAGCTAGGCACTCACTTTC
CTACCTTGTGCTTCGAAGTATGTTGGCAGTGAGGTATTCGACCGCTTGTG
CCAATCTGTCAGTTCCTGCAAATGTAAACCTCGCTCATATTTTTTACTTG
TGGTTCTGAAATCCTCGTTTTTTTCTCAACGCGGAAGTCATGCGTCAACT
GGTTACCGCTACTTCTCCACGCCCATATCGTGAACATCCTTTGGTCGCAT
TTCGCTCTTCTTTTGTACATCATGTTCAAAGTTCCCCAAAAGCCAAAATG
GCTAGAAAAACGTCGAGGGACAGTAGACACGAGCCCAAAAATGCGCCCGC
ATTATTTCACTCACTGTCGACGCATGAAGAATATTGTCAAGCAGCTTCGC
CCGCTCCCTCCCCCGTGGTCTCCCTGCCCTGCTCTCACGCCAATGCGTGG
CTCAGGAGAATAACGTGAAATTCCTCGTCGAGCTTTGCATTGAAGGGTTG
GACGAACGTTCTGCTCGGAAAGCCCTCCAGGATGCCCGCGGAAATGCGCA
GTATGTTGCCCACCACTTTCAATCCGAGAGTGAGAAGCGGCAACATCAGG
CGCAGGTGGCCGAAAGAATGGCCGTGATGGAATCAGTCTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig5871:2831..3821-

>mRNA_H-paniculata_contig5871.13483.1 ID=mRNA_H-paniculata_contig5871.13483.1|Name=mRNA_H-paniculata_contig5871.13483.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=468bp|location=Sequence derived from alignment at H-paniculata_contig5871:2831..3821- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCGGTGGCAACACTACAATCGCAACCGCTCTCTTGTTGGAATTGCAGTC
CGGTGGCAACACTACAATCGCAACCGCTCTCTTGTTGGAATTGCAGGAGA
ATAACGTGAAATTCCTCGTCGAGCTTTGCATTGAAGGGTTGGACGAACGT
TCTGCTCGGAAAGCCCTCCAGGATGCCCGCGGAAATGCGCAGTATGTTGC
CCACCACTTTCAATCCGAGAGTGAGAAGCGGCAACATCAGGCGCAGGTGG
CCGAAAGAATGGCCGTGATGGAATCAGTCTTGGAGAATAACGTGAAATTC
CTCGTCGAGCTTTGCATTGAAGGGTTGGACGAACGTTCTGCTCGGAAAGC
CCTCCAGGATGCCCGCGGAAATGCGCAGTATGTTGCCCACCACTTTCAAT
CCGAGAGTGAGAAGCGGCAACATCAGGCGCAGGTGGCCGAAAGAATGGCC
GTGATGGAATCAGTCTTG
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