mRNA_H-paniculata_contig587.13480.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig587.13480.1
Unique NamemRNA_H-paniculata_contig587.13480.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig587.13480.1 vs. uniprot
Match: A0A6H5KZY8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZY8_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 3.540e-38
Identity = 102/200 (51.00%), Postives = 124/200 (62.00%), Query Frame = 1 
Query:   19 GRRG--GRKAPLGSDVGLILLASRLLLALSEDERFMGALAVM----PAGGRRGEFSAPEMETEVGATLLEVVLSLTAWSLAQGAAGVTVAAAALAAVARNACPFLEGGMREQTAEWLLDALEVHLGTKTARLDSAPWGGAAAAEVDSEVEEGRWPSSWNAPMPA-WSMGVASLLLEGLSAGAAFHHDEQEELVVAMVKRS 597
            G RG   R+ P G ++GL++L SRLLL LS++ RF+  L  M     AGGR  EF+AP++    G T++EVVLSL  ++LA+   G  V A ALAAVARN CPFL  GMR QTAE LLDALEV+L            GG+    V+ E E G       AP P  WS  VASLLLEGL+A A FHH+EQ ELV AM+ RS
Sbjct:  673 GNRGIDNRRKPHGEEIGLLVLLSRLLLTLSDNVRFVAMLVDMLAAGGAGGRGAEFAAPDLGDAPGTTMIEVVLSLCVYALARAGTGGAVVAPALAAVARNLCPFLTRGMRRQTAELLLDALEVYL----------VGGGSDGGLVEEEGEGG----GATAPNPCYWS--VASLLLEGLAAAAVFHHEEQAELVKAMIGRS 856
[Close]
BLAST of mRNA_H-paniculata_contig587.13480.1 vs. uniprot
Match: D8LIC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIC0_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 7.220e-24
Identity = 64/112 (57.14%), Postives = 79/112 (70.54%), Query Frame = 1 
Query:   55 DVGLILLASRLLLALSEDERFMGALAVM-----PAGGRRGEFSAPEMETEVGATLLEVVLSLTAWSLAQGAAGVTVAAAALAAVARNACPFLEGGMREQTAEWLLDALEVHL 375
            +VGL++L SRLLL LS++ERF+  L  M      AGGR  EF+AP++    G T++EVVLSL  ++LA+   G  V A ALAAVARN CPFL  GMR QTAE LLDALEV+L
Sbjct:  122 EVGLLVLLSRLLLTLSDNERFVAMLVDMLAAGGGAGGRGAEFAAPDLGDAPGTTMIEVVLSLCVYALARAGTGGAVVAPALAAVARNLCPFLTRGMRRQTAESLLDALEVYL 233
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig587.13480.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KZY8_9PHAE3.540e-3851.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIC0_ECTSI7.220e-2457.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig587contigH-paniculata_contig587:5025..8293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size628
Cds size627
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig587.13480.1prot_H-paniculata_contig587.13480.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig587 5025..8293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930639.3367934-CDS-H-paniculata_contig587:5024..50931622930639.3367934-CDS-H-paniculata_contig587:5024..5093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 5025..5093 -
1691481384.6746857-CDS-H-paniculata_contig587:5024..50931691481384.6746857-CDS-H-paniculata_contig587:5024..5093Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 5025..5093 -
1622930639.352648-CDS-H-paniculata_contig587:5792..60211622930639.352648-CDS-H-paniculata_contig587:5792..6021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 5793..6021 -
1691481384.685907-CDS-H-paniculata_contig587:5792..60211691481384.685907-CDS-H-paniculata_contig587:5792..6021Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 5793..6021 -
1622930639.3688338-CDS-H-paniculata_contig587:6816..69951622930639.3688338-CDS-H-paniculata_contig587:6816..6995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 6817..6995 -
1691481384.6988115-CDS-H-paniculata_contig587:6816..69951691481384.6988115-CDS-H-paniculata_contig587:6816..6995Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 6817..6995 -
1622930639.3833005-CDS-H-paniculata_contig587:8143..82931622930639.3833005-CDS-H-paniculata_contig587:8143..8293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 8144..8293 -
1691481384.7085-CDS-H-paniculata_contig587:8143..82931691481384.7085-CDS-H-paniculata_contig587:8143..8293Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig587 8144..8293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig587.13480.1

>prot_H-paniculata_contig587.13480.1 ID=prot_H-paniculata_contig587.13480.1|Name=mRNA_H-paniculata_contig587.13480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=209bp
EGVAGLGRRGGRKAPLGSDVGLILLASRLLLALSEDERFMGALAVMPAGG
RRGEFSAPEMETEVGATLLEVVLSLTAWSLAQGAAGVTVAAAALAAVARN
ACPFLEGGMREQTAEWLLDALEVHLGTKTARLDSAPWGGAAAAEVDSEVE
EGRWPSSWNAPMPAWSMGVASLLLEGLSAGAAFHHDEQEELVVAMVKRSL
PPQSADTAG
back to top

mRNA from alignment at H-paniculata_contig587:5025..8293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig587.13480.1 ID=mRNA_H-paniculata_contig587.13480.1|Name=mRNA_H-paniculata_contig587.13480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3269bp|location=Sequence derived from alignment at H-paniculata_contig587:5025..8293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGGGTCGCGGGCCTGGGTCGAAGGGGTGGGCGAAAGGCTCCCCTAGG
GTCGGACGTGGGGCTGATATTGCTGGCGAGTCGTCTATTGCTGGCGTTGA
GCGAGGACGAGCGTTTCATGGGTGCTCTGGCTGTCATGCCCGCTGGCGGG
GTACGTCGTGTGTGTGTGCAGCCGTTACCATCTTACGTGTAATAATTTGT
GTTCTTTTTCTCATATTCTGTGTGTACACAATGCCACCTCAAAGGTCACC
CGCATACAGTCATGAGCAAAATTCGATCAATCAGGGGGACTGGCATTTCA
TTGAATTTCACTCTGAACAAAACTACGTTGTGCAATGTACTTGGCGCAAA
AAATTGAACCAATCAGGGCAGGGGGGTAAAATGGTGGTCGTGACGAAGTT
TTTCATGAACACAACGATAGCGCTAATGGAAATGCCAATAAAGAAAGAAA
AACGGTCATGATGCGGTACTGTTGCTCACGTGTTGACAAGAGTTCACCCC
GCGGACAAATCTGAATACTTGTAAATGGTTTTCACAAAAAATTGAGAGAT
AGCATTCGCCTGAGTCCTAACATGAGCCTGTGTATTTCCTTTTTTATTTT
TTTCAAGCCCCGGAAGGCTGAGGCAAAAACCTTTACCGATGCTTCCATAC
TCAAGTATTTTACCAAAGTATTTCTACAATTCACATAACAGAGTTGTTTA
TTGCTCTGCGGGGTAGGCGCCACCCCGGTTCGGCCGAACCAAGTAGGCAG
TGTGGGGGTTGCACCCAAGACAAGACCTCTGACTAGACTTCCAGTCATGC
TCAGTTCACGAGCTACCCTACCCGTTCGGGCGTAGGTCCGTGTCGTGTAT
TTCATGTGCCCCGGACCATCCATGACTGTTGATGATATTCGTAAATCGAA
TGGATAGGGGTGAGTATCGTCTTTTATACATCTGCTCGTTCTGAAACTCA
GCCGAATAATTTCATCGTTTTTTTTAATATCATTTGCAAGTGTTCGTATT
TGTCCGGGGACTGAAAGACTTACAAAACCACGGCGATGTTGCCCGCGTTC
ATGGTGCATTTCAAGTTGCTGTCTGACGCCATAAAGAAGCAACCCTCCAC
GCATGGTGCCACCAACCCGCCCCTTGCTTGATCTACTTCACTTGATGAGG
GTACGTGAGTGAAACTCGAGATATGTTGCATAACCTGAACATAAGCACGA
TGGAACTATTATGTAAGTATTGTAGATATTTTTACTATCGCAAATGGGTG
GGCTTGTGAGTGAGGTTTCCTCCCCCCGACTTCCCCACGTTCAAACAGCG
CCGCGGGGAGTTTTCCGCCCCGGAAATGGAGACGGAGGTCGGCGCTACGC
TTCTCGAGGTGGTGCTGTCGCTCACGGCTTGGTCGTTGGCGCAGGGAGCG
GCAGGCGTGACGGTGGCGGCCGCAGCGCTTGCGGCGGTGGCTCGCAATGC
ATGTCCCTTCTTGGAGGGGGGCATGCGGTGAGCGAGCGAGCAGAGCGACC
GATTCTTGGCCGTTACATATTCGAGTGCAAAGCAATGAAATGAAAGATTG
TCCTTTGTTTTTTGTTTTGTTTTCGTCGCCCGTCGTTTTCGCGTTTTTTT
TCTGTAATATATTGAGAAATGATCGCATACAGTAATGGTATCCTCTATAT
TGGGTCATCATTGGTTATGCGTGGAGTCTATCACGGGAATTGTATCATGA
GGCAGGAGGACCAACGAAACACGGCCTACTGGAGCCTCGCCATGGTTGTA
TCGAATGACTAATGATGTAAAGTGCAGAAATTACCGATGAGTTGCTTTTT
GTGAGTTGGTAATATACGCTTTTATTTCTTTTGGGAGTACAGAACGAGTA
CTCACTTTTGTTGTTTGAAGTTTGCTGGACGATAACCAGATGGGTGCTAC
ATGACATGAGCAGGAGGTATGTGTGTACCTGCAATACGGACTGTTGTGAG
AAACTATAAGGCGAGTTGACTGCTATTCGTTAAGGATCCGTTTGTGGGCA
TGGGTAAGTTTTGTTTCGGTAACCCCCCGCCTCTCTCTCCCCTCCCCCTC
CTCCCATTAGCTAATAGTGATGTGCTGATCAGTATATCCAGCGATAATTA
TGGGTCAGATAACCTCAGCTCGAGTTTTATGTATAACTTCCGTTGGCATC
CTTCGCCCCTAACTTGGTAGGTCTGGGAATCTCCCATTCAACAGTATTGA
AAAACTGAACATAACCCCAATCTTTGTTGTTATAACCCTCCCGCTCTCTC
ACCCTTACCCCTTGTCTGGCAGGGAGCAAACGGCAGAATGGCTGCTTGAC
GCCCTAGAGGTGCACCTTGGCACCAAGACTGCCCGGTTGGATTCTGCACC
TTGGGGTGGTGCTGCCGCGGCGGAGGTGGACTCGGAAGTCGAGGAGGGTA
GGTGGCCATCTTCATGGAATGCCCCCATGCCGGCATGGTCGATGGGGGTG
GCGTCGCTTCTGCTGGAGGGACTTTCCGCTGGTGCGGCATTTCACCATGA
TGTAAGAATTGAAAAAAATGGCCAAGGAAATGATGTCTTGTTGTCCCGCT
TGTCCCTCAATATGTTAATGTTTTTGTTTAGGTGTGATCGAGACTAGGTT
AGGTTGGGATTCGTCTTGGTTGGTCATGCACAAAACGATGAATGGTTGTT
TGCATGGGCCGTGGACGAACGATTGGTTTTGGGAACGGCCCGATCCGTGT
CGTCGTTTCGCCCTTCAAGCCCCTGTGTAGGTCGGAGTGTCTCAGTCCCA
TTTCTATCTTCGGTGTAAGGTTACCTTGATCCTTTGCCTGTGGAGTGAGC
TGTTATCGAGTCGTATCTGCGCTCGAGTTGTTCTTTTTAACGGATGCTCA
CATATAACTCCGGTAGAGAGAGACAATTGGCCCATGGTGATGAACGAAAT
TCTAAGTTTGCTGCAAAGAGAGTATATATTGTTGAGCAACGAGTTTTTAA
AACCCACAAATGCTGCCACGTGCACATGAAAGGTTTTCCACGTGAGTGCA
TGCGTACCTGAAACACTCCAGTTATGGTAGCCCTTTGCGTCATCGTTACT
AACTGGACTCCGGAAATTGTCATGTTCTAGAGGAACATTCCGAAAAGGTA
CCTGATTACACCTGGTTATAGGTTGTTACAGTGGCTCAAAGAAGCAACTC
CAACCCTGACCATGGCCATACCCCGAATTTGAACCTGAAACATTCGCCAG
GAACAAGAAGAACTGGTCGTGGCTATGGTGAAAAGATCTTTGCCTCCGCA
GAGCGCTGATACCGCGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig587:5025..8293-

>mRNA_H-paniculata_contig587.13480.1 ID=mRNA_H-paniculata_contig587.13480.1|Name=mRNA_H-paniculata_contig587.13480.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1254bp|location=Sequence derived from alignment at H-paniculata_contig587:5025..8293- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAGGGGGTCGCGGGCCTGGGTCGAAGGGGTGGGCGAAAGGCTCCCCTAGG
GTCGGACGTGGGGCTGATATTGCTGGCGAGTCGTCTATTGCTGGCGTTGA
GCGAGGACGAGCGTTTCATGGGTGCTCTGGCTGTCATGCCCGCTGGCGGG
GAGGGGGTCGCGGGCCTGGGTCGAAGGGGTGGGCGAAAGGCTCCCCTAGG
GTCGGACGTGGGGCTGATATTGCTGGCGAGTCGTCTATTGCTGGCGTTGA
GCGAGGACGAGCGTTTCATGGGTGCTCTGGCTGTCATGCCCGCTGGCGGG
CGCCGCGGGGAGTTTTCCGCCCCGGAAATGGAGACGGAGGTCGGCGCTAC
GCTTCTCGAGGTGGTGCTGTCGCTCACGGCTTGGTCGTTGGCGCAGGGAG
CGGCAGGCGTGACGGTGGCGGCCGCAGCGCTTGCGGCGGTGGCTCGCAAT
GCATGTCCCTTCTTGGAGGGGGGCATGCGCGCCGCGGGGAGTTTTCCGCC
CCGGAAATGGAGACGGAGGTCGGCGCTACGCTTCTCGAGGTGGTGCTGTC
GCTCACGGCTTGGTCGTTGGCGCAGGGAGCGGCAGGCGTGACGGTGGCGG
CCGCAGCGCTTGCGGCGGTGGCTCGCAATGCATGTCCCTTCTTGGAGGGG
GGCATGCGGGAGCAAACGGCAGAATGGCTGCTTGACGCCCTAGAGGTGCA
CCTTGGCACCAAGACTGCCCGGTTGGATTCTGCACCTTGGGGTGGTGCTG
CCGCGGCGGAGGTGGACTCGGAAGTCGAGGAGGGTAGGTGGCCATCTTCA
TGGAATGCCCCCATGCCGGCATGGTCGATGGGGGTGGCGTCGCTTCTGCT
GGAGGGACTTTCCGCTGGTGCGGCATTTCACCATGATGGAGCAAACGGCA
GAATGGCTGCTTGACGCCCTAGAGGTGCACCTTGGCACCAAGACTGCCCG
GTTGGATTCTGCACCTTGGGGTGGTGCTGCCGCGGCGGAGGTGGACTCGG
AAGTCGAGGAGGGTAGGTGGCCATCTTCATGGAATGCCCCCATGCCGGCA
TGGTCGATGGGGGTGGCGTCGCTTCTGCTGGAGGGACTTTCCGCTGGTGC
GGCATTTCACCATGATGAACAAGAAGAACTGGTCGTGGCTATGGTGAAAA
GATCTTTGCCTCCGCAGAGCGCTGATACCGCGGGGGAACAAGAAGAACTG
GTCGTGGCTATGGTGAAAAGATCTTTGCCTCCGCAGAGCGCTGATACCGC
GGGG
back to top