mRNA_H-paniculata_contig58674.13470.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58674.13470.1
Unique NamemRNA_H-paniculata_contig58674.13470.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig58674.13470.1 vs. uniprot
Match: B8CGQ2_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CGQ2_THAPS)

HSP 1 Score: 60.5 bits (145), Expect = 1.450e-9
Identity = 28/38 (73.68%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    4 EWPYHIDSTTSRSLCEVKRCRARLVLRWGTTWEAVVLF 117
            E PYH D+T SR L EVK CRARLVLRWGTT E++VLF
Sbjct:  520 ERPYHSDNTASRLLSEVKHCRARLVLRWGTTLESLVLF 557
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BLAST of mRNA_H-paniculata_contig58674.13470.1 vs. uniprot
Match: A0A8K0P260_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0P260_LADFU)

HSP 1 Score: 47.0 bits (110), Expect = 1.670e-5
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = -1 
Query:    7 KQHHGFPRGPPP*Y*PGPTPLNFTERTGRGAIDVVWP 117
            +QH  FP G P  Y PGPT LNF +RT  G   VVWP
Sbjct:    5 QQHPVFPGGHPSKYYPGPTMLNFGDRTRTGVFIVVWP 41
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BLAST of mRNA_H-paniculata_contig58674.13470.1 vs. uniprot
Match: A0A0N4TUI9_BRUPA (Uncharacterized protein n=3 Tax=Brugia TaxID=6278 RepID=A0A0N4TUI9_BRUPA)

HSP 1 Score: 43.5 bits (101), Expect = 9.900e-5
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:   10 PYHIDSTTSRSLCEVKRCRARLVLRWGTTWEAVVL 114
            PYH++STTSR +C+VK+  A LVL   T WE+ VL
Sbjct:    3 PYHVESTTSRPICQVKQRWAWLVLGSETAWESQVL 37
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58674.13470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
B8CGQ2_THAPS1.450e-973.68Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A8K0P260_LADFU1.670e-556.76Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
A0A0N4TUI9_BRUPA9.900e-557.14Uncharacterized protein n=3 Tax=Brugia TaxID=6278 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58674contigH-paniculata_contig58674:223..345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue2.2e-07
Seed eggNOG ortholog35128.Thaps12187
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG OGs2CRUX@1,2R98J@2759,2XH8G@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size123
Cds size123
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.4555626-CDS-H-paniculata_contig58674:222..3451622930638.4555626-CDS-H-paniculata_contig58674:222..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58674 223..345 +
1691481384.2903106-CDS-H-paniculata_contig58674:222..3451691481384.2903106-CDS-H-paniculata_contig58674:222..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58674 223..345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58674.13470.1prot_H-paniculata_contig58674.13470.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58674 223..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58674.13470.1

>prot_H-paniculata_contig58674.13470.1 ID=prot_H-paniculata_contig58674.13470.1|Name=mRNA_H-paniculata_contig58674.13470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=41bp
QEWPYHIDSTTSRSLCEVKRCRARLVLRWGTTWEAVVLFLL
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mRNA from alignment at H-paniculata_contig58674:223..345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58674.13470.1 ID=mRNA_H-paniculata_contig58674.13470.1|Name=mRNA_H-paniculata_contig58674.13470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=123bp|location=Sequence derived from alignment at H-paniculata_contig58674:223..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAATGGCCATACCACATCGATAGCACCACGTCCCGTTCGCTCTGTGA
AGTTAAGCGGTGTCGGGCCAGGCTAGTACTACGGTGGGGGACCACGTGGG
AAGCCGTGGTGCTGTTTCTTCTT
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Coding sequence (CDS) from alignment at H-paniculata_contig58674:223..345+

>mRNA_H-paniculata_contig58674.13470.1 ID=mRNA_H-paniculata_contig58674.13470.1|Name=mRNA_H-paniculata_contig58674.13470.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at H-paniculata_contig58674:223..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGAATGGCCATACCACATCGATAGCACCACGTCCCGTTCGCTCTGTGA
AGTTAAGCGGTGTCGGGCCAGGCTAGTACTACGGTGGGGGACCACGTGGG
AAGCCGTGGTGCTGTTTCTTCTTCAGGAATGGCCATACCACATCGATAGC
ACCACGTCCCGTTCGCTCTGTGAAGTTAAGCGGTGTCGGGCCAGGCTAGT
ACTACGGTGGGGGACCACGTGGGAAGCCGTGGTGCTGTTTCTTCTT
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