mRNA_H-paniculata_contig5867.13468.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5867.13468.1
Unique NamemRNA_H-paniculata_contig5867.13468.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: D7G4B4_ECTSI (Ubiquitin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4B4_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 8.620e-76
Identity = 119/192 (61.98%), Postives = 143/192 (74.48%), Query Frame = 1
Query:  190 LYPR------KQLAVSVEV-----VVDYRQCEWRVRASPNGTLRDLETNKDYPYLFWEADSGDGRVVQSFNLSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGLATYDACLDTAELNDLQAPPRKGFVAVEWGGMNLNGTA 732
            LYP+      KQLA   E      V   +QC+W V ASP G+L+DL T ++YPYLFWEADS DGRV +SF L G+ SFCVAG  AG FLD+AL RLGLN +ERCDM+T WL QLE+  F  IYFV+V+RY QAA+L+IVP PDV IRVFMAFRG   YDA LDTA++ +L++P R+GFVAVEWGGMNLNG +
Sbjct:  260 LYPKLQPRNLKQLAADYEAGSQANVAGGQQCKWNVHASPGGSLKDLSTGREYPYLFWEADSSDGRVTRSFGLDGSRSFCVAGEAAGVFLDVALERLGLNVRERCDMVTCWLPQLESSRFNVIYFVEVERYEQAARLTIVPTPDVTIRVFMAFRGAHAYDAELDTAKIEELRSPAREGFVAVEWGGMNLNGVS 451          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: D7FN69_ECTSI (Ubiquitin family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN69_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.820e-42
Identity = 79/167 (47.31%), Postives = 103/167 (61.68%), Query Frame = 1
Query:    1 PSDTVGKIKKMYKSIRGPPPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKPVILLYPRKQLAVSVEVVVDYRQCEWRVRASPNGTLRDLETNKDYPYLFWEADSGDGRVVQSFNLSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLE 501
            PS+TV  +K+  +   G PP+QQ+ +F  K LE+D  + +            L L G  P  L   R+       +V   + CEW V A+P+G+L D+ T+++YPYLFWEADS DG V  +F L  T SFCVAGN AG FLD+AL RLGLN +ERCD+ITYWL QLE
Sbjct:    3 PSNTVLDLKRKVQEEEGIPPDQQKAVFAGKLLENDRTMPEPT----------LELLGAVPQTLDEERQTSGYEA-IVASGQHCEWIVHANPDGSLTDISTSREYPYLFWEADSTDGLVCGNFGLEKTPSFCVAGNDAGLFLDVALERLGLNVRERCDVITYWLPQLE 158          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: A0A0K6FPD1_9AGAM (Polyubiquitin-C n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A0K6FPD1_9AGAM)

HSP 1 Score: 157 bits (398), Expect = 7.210e-42
Identity = 106/298 (35.57%), Postives = 144/298 (48.32%), Query Frame = 1
Query:    4 SDTVGKIKKMYKSIRGPPPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKPVILLYP-------RKQLAVS-----------VEVVVDYRQCE-------WRVRASPNGTLRDLETNKDYPYLFWEADSG------------DGRVVQSFN-----LSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRG--------------LATYDACL--DTAELNDLQAPPRKGFVAVEWGGMNLN 723
            SDT+  IK   ++  G PP++QRLIF  KQLED   LSDYN++   T HLV RL GGKPVI L+P       R QL+++             +    ++ +       W V A P+GTL D  TN++  YLFWEA +                V  +F+     L  + S  +  NK   ++D AL  LGL+T+ R   ITYWL  L  + F A+ F+    Y  AA L + PAP V+ RVFM FRG              +A  D  +  D   ++  Q   +  F  VEWGGM +N
Sbjct:  171 SDTIDNIKASIQNRTGMPPDEQRLIFAGKQLEDGRTLSDYNIQRETTLHLVKRLRGGKPVIYLFPPSSTSDIRVQLSLARSWDFSEIYPPTTITTAAKETKSLGQSVAWTVNAQPDGTLWDQATNREVSYLFWEARTNPKLPSSPPTTRPSSPVEANFDPASPLLLPSHSALLPFNKVTGYIDDALLALGLHTEARTSFITYWLPDLSKHAFIALRFLPQHEYENAAPLDVSPAPQVVTRVFMLFRGVDESQVELWNEAAEMAQRDVVVWRDVVGVDIAQVRDKLLFRVVEWGGMEVN 468          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: A0A8H3GSI3_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3GSI3_9AGAM)

HSP 1 Score: 154 bits (389), Expect = 5.630e-40
Identity = 101/300 (33.67%), Postives = 144/300 (48.00%), Query Frame = 1
Query:    4 SDTVGKIKKMYKSIRGPPPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKPVILLYPR---KQLAVSVEVVVDY----------------------RQCEWRVRASPNGTLRDLETNKDYPYLFWEADSGDGRVVQ---------------SFN-----LSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGL----------ATYDACLDTAELNDL------QAPPRKGFVAVEWGGMNL 720
            SDTV  +K   +   G PP+QQRLIF  KQLED+  L +Y V  G+  HLV RL GGKPVI ++P    K + V + +   +                      +   WRV A PNGTL D  T+++  YLFWEA +    +                 +F+     L  + S  +   K   ++D  L  LGL+T+ R   ITYWL QL  + F A+ F+  + Y +AA L+I PAP+VI RVFM F+G+          A   AC+D +   ++      +   +  F  +EWGGM +
Sbjct:  262 SDTVDILKARIQDKAGIPPDQQRLIFSGKQLEDERTLHEYGVTAGSFLHLVSRLKGGKPVIYIFPANTMKDIQVHLSLTQGWSFSGIYPPTNITTISDNSMGLGQNINWRVDAKPNGTLLDHTTHREVTYLFWEAQTNPKSLFSPPATRPSTPTEMSTLAFDPASPILLPSQSALLPCEKVTNYIDDVLLTLGLHTEARTSFITYWLPQLSNHAFVALRFLAQEDYEKAAPLNITPAPEVIARVFMLFKGIEESEIGLWSEAAARACMDVSMWRNIVGIDVAKVHDKSLFRVLEWGGMEV 561          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: D7FJP3_ECTSI (Ubiquitin fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJP3_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 9.640e-38
Identity = 62/89 (69.66%), Postives = 75/89 (84.27%), Query Frame = 1
Query:  457 QERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGLATYDACLDTAELNDLQAPPRKGFVAVEWGGMNLN 723
            +ERCDM+TYWL QLE+  F  IYFV+V+RY +AA+L+I PAPDV IR+FMAFRG+  YD  LDTA++ DL+AP RKGFVAVEWGGMNLN
Sbjct:    2 RERCDMVTYWLPQLESSAFNVIYFVNVERYEKAARLTIEPAPDVTIRIFMAFRGIDAYDKELDTAKMEDLRAPGRKGFVAVEWGGMNLN 90          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: A0A8H8P4X4_9AGAM (Ubiquitin family protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H8P4X4_9AGAM)

HSP 1 Score: 144 bits (363), Expect = 1.410e-36
Identity = 90/277 (32.49%), Postives = 133/277 (48.01%), Query Frame = 1
Query:    4 SDTVGKIKKMYKSIRGPPPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKPVILLYPR---KQLAVSVEVVVDYRQCEWRVRASPNGTLRDLETNKDYPYLFWEADSGD----------GRVVQSFNLS---------GTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGL----------ATYDACLDTAELNDL------QAPPRKGFVAVEWGGMNL 720
            SDT+  +K   +   G P   QRLI   +QLED   L DYN++  +  HLV RL GGKP+I ++P    K + V +  +   +  +W V A P+GTL D   N++  YLFWEA +            G  V+   L+          + S  +  +K   ++D  L   G + + R   ITYWL  L  + + ++ F+  + Y +AA L+I PAP+VI RVFM FRG+          A   AC D     D+      +   R  +  +EWGGM +
Sbjct:  228 SDTIASLKSKIQDREGIPTNHQRLIMAGRQLEDKATLMDYNIQHESIVHLVCRLVGGKPIIYIFPASTVKDVRVHLSTLTGGQTIDWTVDAKPDGTLFDKVANREVAYLFWEAHTSPRLPSPPVTRPGTPVEISALTFDPSSPVLLSSQSALLPFDKITGYIDDVLLAPGFHLEARTSFITYWLPSLSRHAYVSLRFLPQEEYEKAAPLNITPAPEVITRVFMLFRGVEESQVEFWSDAAGMACQDVTVWRDVVGVDIEKTLNRSLYRVLEWGGMEV 504          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: A2FER7_TRIVA (Ubiquitin family protein n=1 Tax=Trichomonas vaginalis TaxID=5722 RepID=A2FER7_TRIVA)

HSP 1 Score: 141 bits (356), Expect = 2.250e-36
Identity = 88/244 (36.07%), Postives = 123/244 (50.41%), Query Frame = 1
Query:   13 VGKIKKMYKSIRGPPPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKPVILLYPRKQLAVSVEVVV---DY--------RQCEWRVRASPNGTLRDLETNKDYPYLFWEADSGDGRVVQSFNLSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGLATYDACLDTAELNDLQAPPRKGFVAVEWGG 711
            VG +K M K   G  P+QQRLIF+ KQ+ED+  L DYNV DG T +L+LRL GGKPVI LYP++++   V + +   D+        +   W V+A P+G +  +   K   YLFWE        +   NL+    F + G  +  F +  L  + LN  E CD ITYW  +L  Y +  + F   + +     +++ P PD I RVF  F  L     C    E  +L    R GF  +EWGG
Sbjct:  151 VGYLKDMIKEKEGICPDQQRLIFKGKQMEDENTLMDYNVHDGDTINLILRLRGGKPVIYLYPKEEIDAKVSIKINDGDFSFVYPSFDKDNTWNVKALPSGEI--VHRGKKMRYLFWE-------TLFYPNLNMDKGFIIKGEDSVSFFEDKLKFMNLNDAEICDFITYWCPKLCGYKYVKVCF-HFENFDDMCPMNVEPKPDNINRVF--FAALPLESPC--DIEPQELPTFNRDGFTVIEWGG 380          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: A0A165KQJ3_EXIGL (Ubiquitin-domain-containing protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165KQJ3_EXIGL)

HSP 1 Score: 138 bits (348), Expect = 2.730e-36
Identity = 92/271 (33.95%), Postives = 130/271 (47.97%), Query Frame = 1
Query:   55 PPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKPVILLYPRKQLAVSVEV-------------VVDY--------RQCEWRVRAS-PNGTLRDLETNKDYPYLFWEADSGDGRV---------VQSFN-----LSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGLATYDACL-------------DTAELNDLQAPPRKGFVAVEWGGMNL 720
            PP+QQRLI+  KQLED   +SDYN++ GAT  LV RL GGKPV+ L+     + SV +              VD         +  +W V  + P+G L D +T ++  YLFWEA S    V           +FN     ++  +S  +A      +L  AL  L L+ + R   ITYWL  ++A+   A+ F+    Y +AA L + PAPD++ RVFM FRGL+  DA               D   +   +A     F  +EWGGM +
Sbjct:    2 PPDQQRLIYAGKQLEDGRTISDYNIRRGATITLVSRLRGGKPVVYLFAPSPTSASVSLSLVPEWSFSCVYPTVDIVPSVNGKGQAVQWDVNVNGPDGVLVDKQTGQEEAYLFWEALSNPSAVDTPPASPTLPAAFNPARPVINPQNSVVLAVADVPAYLQAALKALCLHVEARTSFITYWLPHIQAHTHIALRFLPQDEYERAAPLDVTPAPDIVTRVFMLFRGLSAQDAGAWRAAQFVEAHVWKDVVGVETDKALDASLFRVLEWGGMEV 272          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: A0A4Q2D1A5_9AGAR (Ubiquitin-like domain-containing protein n=1 Tax=Candolleomyces aberdarensis TaxID=2316362 RepID=A0A4Q2D1A5_9AGAR)

HSP 1 Score: 139 bits (351), Expect = 2.900e-35
Identity = 84/249 (33.73%), Postives = 124/249 (49.80%), Query Frame = 1
Query:    4 SDTVGKIKKMYKSIRGPPPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKPVILLYPRKQLAVSVEVVV-------------------DYRQCEWRVRASPNGTLRDLETNKDYPYLFWEADSGD---------------GRVVQSF-----NLSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGLATYD 633
            SDTV  +K   +   G  PE QRLI+  +QL DD  L+   ++ GA  HLVLR  GGKPVI LYP     VS ++ +                     ++ EW V ASPNGTL+++ T+ +  YL+WEA++                   V ++F      L+  +S  +   K   +LD +L  LGL+ + R   ITYWL  +  +   A+ F+    Y +AA L++ P PDV+ R+FM F+G+   D
Sbjct:  145 SDTVANLKAKVEDQDGTLPEDQRLIYAGRQLADDPTLAACGIQSGAMIHLVLRQRGGKPVIYLYPPSATRVSTKLSLVPEWEFSAIYPVVPAKTTPQGQELEWVVDASPNGTLKEVNTDLEVSYLYWEAETNTHNLLSPPPSPSLIPTSNVDETFVPNRATLNAKNSVLLEVKKITPYLDTSLKALGLHVEARTSFITYWLPSILKHKHVALRFLPQSAYERAAPLNLDPTPDVVARIFMLFKGVEEED 393          
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Match: R5AD22_9CLOT (Uncharacterized protein n=1 Tax=Clostridium sp. CAG:1013 TaxID=1262769 RepID=R5AD22_9CLOT)

HSP 1 Score: 132 bits (333), Expect = 1.120e-34
Identity = 81/192 (42.19%), Postives = 111/192 (57.81%), Query Frame = 1
Query:  175 KPVILLYPRKQLAVSVEVVVDYR----------QCEWRVRASPNGTLRDLETNKDYPYLFWEADSGDGRVVQSFNLSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMITYWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGLATYDACLDTAELNDLQAPPRKGFVAVEWGGMNL 720
            KPVI LYP ++  V+V++  DY           Q  W V ASP+GTL D +  + Y YL+WE   G+ +V   F+      FCVAG     FL+ AL+RLGL  +E  + I YWL Q+E  P+  I F     Y +AAKLS+ PAPD ++RVFMA++ L   +  L+   + +L AP R+GF AVEWGG  +
Sbjct:   41 KPVIYLYPEEETQVAVKL--DYAGELTCTYPAYQDGWTVTASPDGTLTDAD-GQTYNYLYWE---GEDQVEYDFS----QGFCVAGEDTASFLEDALSRLGLTRKEANEFIVYWLPQMEENPYNLIAFQS-DAYTEAAKLSMEPAPDTLLRVFMAWKPL---EEPLEIP-VQELTAPERRGFTAVEWGGCQV 217          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5867.13468.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4B4_ECTSI8.620e-7661.98Ubiquitin-like domain-containing protein n=1 Tax=E... [more]
D7FN69_ECTSI1.820e-4247.31Ubiquitin family protein n=1 Tax=Ectocarpus silicu... [more]
A0A0K6FPD1_9AGAM7.210e-4235.57Polyubiquitin-C n=1 Tax=Rhizoctonia solani TaxID=4... [more]
A0A8H3GSI3_9AGAM5.630e-4033.67Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
D7FJP3_ECTSI9.640e-3869.66Ubiquitin fusion protein n=1 Tax=Ectocarpus silicu... [more]
A0A8H8P4X4_9AGAM1.410e-3632.49Ubiquitin family protein n=1 Tax=Rhizoctonia solan... [more]
A2FER7_TRIVA2.250e-3636.07Ubiquitin family protein n=1 Tax=Trichomonas vagin... [more]
A0A165KQJ3_EXIGL2.730e-3633.95Ubiquitin-domain-containing protein n=1 Tax=Exidia... [more]
A0A4Q2D1A5_9AGAR2.900e-3533.73Ubiquitin-like domain-containing protein n=1 Tax=C... [more]
R5AD22_9CLOT1.120e-3442.19Uncharacterized protein n=1 Tax=Clostridium sp. CA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5867contigH-paniculata_contig5867:8452..10401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.9
Seed ortholog evalue2.2e-72
Seed eggNOG ortholog2880.D7G4B4
KEGG koko:K02977,ko:K02983,ko:K08770
KEGG Pathwayko03010,ko03320,map03010,map03320
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein tag
EggNOG OGsCOG1552@1,KOG0003@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Exons4
Model size735
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5867.13468.1prot_H-paniculata_contig5867.13468.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5867 8452..10371 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.3614848-CDS-H-paniculata_contig5867:8451..85721622930638.3614848-CDS-H-paniculata_contig5867:8451..8572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 8452..8572 -
1691481384.2258825-CDS-H-paniculata_contig5867:8451..85721691481384.2258825-CDS-H-paniculata_contig5867:8451..8572Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 8452..8572 -
1622930638.3802767-CDS-H-paniculata_contig5867:8988..91901622930638.3802767-CDS-H-paniculata_contig5867:8988..9190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 8989..9190 -
1691481384.2391586-CDS-H-paniculata_contig5867:8988..91901691481384.2391586-CDS-H-paniculata_contig5867:8988..9190Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 8989..9190 -
1622930638.3935747-CDS-H-paniculata_contig5867:9492..96761622930638.3935747-CDS-H-paniculata_contig5867:9492..9676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 9493..9676 -
1691481384.2489777-CDS-H-paniculata_contig5867:9492..96761691481384.2489777-CDS-H-paniculata_contig5867:9492..9676Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 9493..9676 -
1622930638.405271-CDS-H-paniculata_contig5867:10173..103711622930638.405271-CDS-H-paniculata_contig5867:10173..10371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 10174..10371 -
1691481384.2652123-CDS-H-paniculata_contig5867:10173..103711691481384.2652123-CDS-H-paniculata_contig5867:10173..10371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5867 10174..10371 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.4173648-UTR-H-paniculata_contig5867:10371..104011622930638.4173648-UTR-H-paniculata_contig5867:10371..10401Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5867 10372..10401 -
1691481384.2789068-UTR-H-paniculata_contig5867:10371..104011691481384.2789068-UTR-H-paniculata_contig5867:10371..10401Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5867 10372..10401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5867.13468.1

>prot_H-paniculata_contig5867.13468.1 ID=prot_H-paniculata_contig5867.13468.1|Name=mRNA_H-paniculata_contig5867.13468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=235bp
MYKSIRGPPPEQQRLIFEYKQLEDDWILSDYNVKDGATFHLVLRLTGGKP
VILLYPRKQLAVSVEVVVDYRQCEWRVRASPNGTLRDLETNKDYPYLFWE
ADSGDGRVVQSFNLSGTSSFCVAGNKAGEFLDIALTRLGLNTQERCDMIT
YWLAQLEAYPFTAIYFVDVQRYAQAAKLSIVPAPDVIIRVFMAFRGLATY
DACLDTAELNDLQAPPRKGFVAVEWGGMNLNGTA*
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mRNA from alignment at H-paniculata_contig5867:8452..10401-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5867.13468.1 ID=mRNA_H-paniculata_contig5867.13468.1|Name=mRNA_H-paniculata_contig5867.13468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1950bp|location=Sequence derived from alignment at H-paniculata_contig5867:8452..10401- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTAGCGACACCGTTGGAAAGATCAAGAAGATGTACAAGAGCATCAGGGG GCCACCCCCGGAGCAACAGCGGCTGATATTCGAGTACAAACAACTTGAAG ATGATTGGATCCTTTCGGACTACAACGTGAAAGACGGGGCTACGTTTCAT CTAGTATTGCGTCTTACGGGTGGTAAGCCGGTGATCCTCCTCTACCCGCG GAAACAGCTTGCTGTCTCTGTGGAAGTCGTTTTGAGCTCTTGCTGGAATT TCTCCGCGCTTTACCCCAAGCCCTCAAGCAAGGGGCTGCCGCAGTCTGAG AATCCTTCGGTGAGTCCACAGATTCTCGCTCGCTCTCATTTATCTTGCAT GGCACTGGCTGAACGCTTGGTTAAAATGTAGATAATTTTTGGGTCTGTGC CACACGGCACTGTGTCGATCTCACAACGTGAAAATTCTTCTTGGAATAGC CTACAGCATGTCTGATCGCATTTCGAATTCAGTAATTATCACGTAGCTCA CTACAGGACCTATCACGTTGACCTCTGACTTCCTACTTGAACGGTAACGT TTGACAGTCTGCCTACCATACGATGTATGTGTATATGGAATCTCCTTGTT TTCATGCCCACAGACCGATTTCCACGAGTAATCGCCCGGCCAACCGGGGC AAAAATGATTTTAAAAGATTCCGCAAAACTCTTTCCTCTCTTTCTGTGCT TATCACATGCATGTTACCTGGACAGGTAGTAGACTACAGACAATGCGAGT GGAGAGTTCGAGCCAGTCCCAACGGCACCTTGCGGGACCTGGAAACGAAC AAAGACTACCCCTACCTCTTCTGGGAAGCCGACTCTGGCGATGGTCGAGT TGTGCAGAGCTTCAACCTGAGTGGGACTTCATCGTTCTGCGTGGCTGGCA ACAAGGCTGGTATGTGACACAAAACGAAATGTACCTACTCTTTACGAGTG GACTGATGGTGGTACGCAGTGGTTACGATAAATGTAGGCAAGTAGCATTC TCGGAAACGGCGTGAGCAGGAAGGGATTAACTGAAAAATTGGTTTAAATG CAAGTGTTGGGTTTCCGGTGCGTTGTGTGGTATATGCGGCATGCTTATCA GTCATTGTGGGTGCATGTCGCGTGTATACTTTTCTTACATTAACGCTTTG GGATTGACTCTGTCTATTGCCTGGTATTCATCGAACTCTACGACGCATGA TACCTTCCCAGGCGAATTCCTTGACATCGCCCTGACACGGCTCGGGCTCA ACACACAGGAGAGATGTGATATGATCACCTATTGGTTGGCGCAGCTGGAG GCCTACCCATTCACCGCCATCTACTTCGTCGATGTACAGCGCTATGCCCA AGCTGCCAAGCTCAGTATCGTTCCAGCTCCCGACGTGATTATCCGGGTTT TCATGGCCTTCAGGTGGGTTTCGTCACGCGAAAACAGTATTGTTGTACAC CAAGATATAAGAGTGTCTCGTACCTACGTCGCAGAGTATTTGGGGTTGCT CCACCAGAAATGGTTTGGTACAACATGCACAATATGTTAGGTGTAATGAG GCTGGGGTCGGAAATATAGAAAGTCAAAGTTTCCCTGCGATTAGTCCCTA GCAATGGGAGAAACGCACTTGCCATGCTTCGAGGGTGAGAATAATGACCT AATTATATTGTCTCACATTTTGTGTTAGCCTGCTTATGCCATGTGTGCCT ACAATAATAAATACGCTGGGCACAACGACACACATCTACACCCAGAAGCT GCCGTCATACGCACCAATTTAAGCCCCACGTTTCTGTAATTTACAATCGT CACATTTGTTATCCTTCGGTTGGTGGCAGGGGGTTGGCAACGTATGACGC CTGTCTAGATACGGCGGAGCTTAATGACTTACAGGCTCCCCCTAGAAAAG GCTTCGTCGCGGTGGAGTGGGGAGGCATGAACCTCAACGGTACCGCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig5867:8452..10401-

>mRNA_H-paniculata_contig5867.13468.1 ID=mRNA_H-paniculata_contig5867.13468.1|Name=mRNA_H-paniculata_contig5867.13468.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1410bp|location=Sequence derived from alignment at H-paniculata_contig5867:8452..10401- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTACAAGAGCATCAGGGGGCCACCCCCGGAGCAACAGCGGCTGATATT
CGAGTACAAACAACTTGAAGATGATTGGATCCTTTCGGACTACAACGTGA
AAGACGGGGCTACGTTTCATCTAGTATTGCGTCTTACGGGTGGTAAGCCG
GTGATCCTCCTCTACCCGCGGAAACAGCTTGCTGTCTCTGTGGAAGTCAT
GTACAAGAGCATCAGGGGGCCACCCCCGGAGCAACAGCGGCTGATATTCG
AGTACAAACAACTTGAAGATGATTGGATCCTTTCGGACTACAACGTGAAA
GACGGGGCTACGTTTCATCTAGTATTGCGTCTTACGGGTGGTAAGCCGGT
GATCCTCCTCTACCCGCGGAAACAGCTTGCTGTCTCTGTGGAAGTCGTAG
TAGACTACAGACAATGCGAGTGGAGAGTTCGAGCCAGTCCCAACGGCACC
TTGCGGGACCTGGAAACGAACAAAGACTACCCCTACCTCTTCTGGGAAGC
CGACTCTGGCGATGGTCGAGTTGTGCAGAGCTTCAACCTGAGTGGGACTT
CATCGTTCTGCGTGGCTGGCAACAAGGCTGGTAGTAGACTACAGACAATG
CGAGTGGAGAGTTCGAGCCAGTCCCAACGGCACCTTGCGGGACCTGGAAA
CGAACAAAGACTACCCCTACCTCTTCTGGGAAGCCGACTCTGGCGATGGT
CGAGTTGTGCAGAGCTTCAACCTGAGTGGGACTTCATCGTTCTGCGTGGC
TGGCAACAAGGCTGGCGAATTCCTTGACATCGCCCTGACACGGCTCGGGC
TCAACACACAGGAGAGATGTGATATGATCACCTATTGGTTGGCGCAGCTG
GAGGCCTACCCATTCACCGCCATCTACTTCGTCGATGTACAGCGCTATGC
CCAAGCTGCCAAGCTCAGTATCGTTCCAGCTCCCGACGTGATTATCCGGG
TTTTCATGGCCTTCAGGCGAATTCCTTGACATCGCCCTGACACGGCTCGG
GCTCAACACACAGGAGAGATGTGATATGATCACCTATTGGTTGGCGCAGC
TGGAGGCCTACCCATTCACCGCCATCTACTTCGTCGATGTACAGCGCTAT
GCCCAAGCTGCCAAGCTCAGTATCGTTCCAGCTCCCGACGTGATTATCCG
GGTTTTCATGGCCTTCAGGGGGTTGGCAACGTATGACGCCTGTCTAGATA
CGGCGGAGCTTAATGACTTACAGGCTCCCCCTAGAAAAGGCTTCGTCGCG
GTGGAGTGGGGAGGCATGAACCTCAACGGTACCGCGTAGGGGGTTGGCAA
CGTATGACGCCTGTCTAGATACGGCGGAGCTTAATGACTTACAGGCTCCC
CCTAGAAAAGGCTTCGTCGCGGTGGAGTGGGGAGGCATGAACCTCAACGG
TACCGCGTAG
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