mRNA_H-paniculata_contig58611.13466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE) HSP 1 Score: 176 bits (445), Expect = 9.120e-46 Identity = 109/305 (35.74%), Postives = 156/305 (51.15%), Query Frame = -3
Query: 20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
LAR+L MPDKQ A L+ ++S T + ++ER ++ +L AC DN +W+LE + R E FF C +R L P+Q+ QA +STG+GGLGL + R +SA++ A LGE V+ +PGT +V +G ++ L ++ G+S E +L P V WA E G P + L HD + K+G ++K ++ + L +LP PP D+P+ G E + A R RS G G A RA P D AR + E+V RR LGIE +LA RCP C
Sbjct: 701 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVRGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVDTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGIEEFLAERCPRC 1004
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE) HSP 1 Score: 172 bits (436), Expect = 1.950e-45 Identity = 107/305 (35.08%), Postives = 155/305 (50.82%), Query Frame = -3
Query: 20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
LAR+L MPDKQ A L+ ++S T + ++ER ++ +L AC DN +W+LE + R E FF C +R L P+Q+ QA +STG+GGLGL + R +SA++ A LGE V+ +PGT +V +G ++ L ++ +S E +L P V WA E G P + L HD + ++G V+K ++ + L +LP PP D+P+ G E + A R RS G G A RA P D AR + E+V RR LG+E +LA RCP C
Sbjct: 177 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHELGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 480
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE) HSP 1 Score: 172 bits (437), Expect = 2.380e-45 Identity = 106/305 (34.75%), Postives = 155/305 (50.82%), Query Frame = -3
Query: 20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
LAR+L MPDKQ A L+ ++S T + ++ER ++ +L AC DN +W+LE + R E FF C +R L P+Q+ QA +STG+GGLGL + R +SA++ A LGE V+ +PGT +V +G ++ L ++ +S E ++ P V WA E G P + L HD + K+G ++K ++ + L +LP PP D+P+ G E + A R RS G G A RA P D AR + E+V RR LG+E +LA RCP C
Sbjct: 247 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGIIPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 550
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5K2M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M1_9PHAE) HSP 1 Score: 168 bits (426), Expect = 8.320e-45 Identity = 105/305 (34.43%), Postives = 152/305 (49.84%), Query Frame = -3
Query: 20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
LAR+L MPDKQ A + ++S T + ++ER ++ +L AC DN +W+LE + R +E FF C +R L P+Q+ QA +STG+GGLGL + R +SA++ A LGE V+ +PGT +V +G ++ L ++ GVS E +L P V WA E G P + L HD + K+G ++K ++ + L +LP PP D P+ G E + A R R G RA P D AR + E+V RR LG+E +LA RCP C
Sbjct: 184 LARMLVRMPDKQEAHFVISQSLTQRSGYIERGINHKLVRGACERLDNMVMWVLEATMGLRDTEDEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVSTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDSPYGGQEARNMAYARTRCSQGQRGRTFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 487
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE) HSP 1 Score: 166 bits (419), Expect = 2.590e-42 Identity = 104/305 (34.10%), Postives = 153/305 (50.16%), Query Frame = -3
Query: 20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
LAR+L MPDKQ A L+ ++S T + ++ER ++ L AC L DN +W+LE + R E FF +R + +Q+ QA +STG+GGLGL + R +SA++ A LGE V+ +PGT +V +G ++ L ++ +S E +L P V WA E G P + L HD + K+G ++K ++ + L +LP PP D+P+ G E + A R RS G G A RA P D AR + E+V RR LG+E +LA +CP C
Sbjct: 658 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHNLVRGACELLDNMVMWVLEATMGLRDTEVEEEFFQDDYQPDRFKIKTYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPAGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAEKCPRC 961
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE) HSP 1 Score: 151 bits (382), Expect = 1.970e-37 Identity = 102/313 (32.59%), Postives = 150/313 (47.92%), Query Frame = -3
Query: 20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRL--------QATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
LAR++ MPDKQ A L+ ++ T + +ER ++ +L AC DN +W+LE + R +E FF C +R L + QA +S G+GGLGL + R +SA++ A LGE V+ +PGT +V +G ++ L ++ +S E +L P V WA E G P + L HD + K+G ++ ++ L+ L +LP PP D+P+ G E + A R RS G G A RA P D AR + E+V RR LG+E +LA RCP C
Sbjct: 340 LARMVVRMPDKQVAHLVTSQLLTQRSGNIERGINHKLVRGACERLDNMVMWVLEATMGLRDAEDEEEFFQDDCQPDRFKRLAGALVPADAPPAAQARLSAGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINDIQLEKLMESLKHLPQEAVPPTRDNPYGGQEARNMAYARTRSSKGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 651
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.060e-34 Identity = 89/256 (34.77%), Postives = 125/256 (48.83%), Query Frame = -3
Query: 20 LWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 772
+W+LE + R E FF C +R L P+Q+ QA +STG+GGLGL + R +SA++ A LGE V+ +PGT +V +G ++ L ++ GVS E +L P V WA E G P + L HD + K+G V K ++ + L ++P PP D+P+ G E + A R RS G G A RA P D AR + E+V RR LG+E +LA RCP C
Sbjct: 3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQSQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAV-KIQLEKFMESLEHVPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 256
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE) HSP 1 Score: 136 bits (343), Expect = 4.710e-33 Identity = 85/256 (33.20%), Postives = 122/256 (47.66%), Query Frame = -3
Query: 20 LWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 772
+W+LE + R E FF C +R L P+Q+ QA +STG+G LGL R +SA++ A LGE V+ +PGT +V +G ++ L ++ G+S E +L P V WA E G P + L HD + K+G ++K ++ + L +LP PP D+P+ G E + A R RS G G RA D AR + E+V RR LG+E +LA RCP C
Sbjct: 3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLRPYQQAQARLSTGAGELGLPEAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHTFLRAAATDRAREIPSNEFVYATRRALGVEEFLAERCPRC 257
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE) HSP 1 Score: 108 bits (271), Expect = 9.100e-23 Identity = 81/258 (31.40%), Postives = 107/258 (41.47%), Query Frame = -3
Query: 20 EEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAVVRAACCRRSSRTLGERVQA---------------------HLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 730
+E FF C +R L P+Q+ QA +STG+GGLGL AA RR S +LG V L + GVS + +L P V WA E G P + L +D + K+G V+K ++ L+ LG+LP PP D+P+ G E + A R RS G G A RA P D AR + E+V RR LG+E +LA RCP C
Sbjct: 392 DEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLP-------------AAVMRRFSASLGNLVGTLFAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNREHGVSVKILKGILPPSWVEWAFEPPGETGRRQ-PTVAELAAYDGESTTPRKAQHKLGKAVNKIQLEKLIESLGHLPQEAVPPTSDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 635
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE) HSP 1 Score: 82.8 bits (203), Expect = 3.430e-14 Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = -3
Query: 20 LGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 499
+G ++ L ++ GVS E +L P V WA E P + L HD + K+G V K ++ + L +LP P D+P+ G E + A R RS G G A +A P + AR + E+V RR LG+E +LA RCP C
Sbjct: 1 MGDAIKELNQEHGVSVEILKGILPPSWVEWALEPAGET-RRRQPTVAELAAHDEESTTPRKAQHKLGKAVSKIQLEKFMESLEHLPQEAVPHTRDNPYGGQEARNMAYARTRSSQGQGEHAFLKAAPTERAREIPLNEFVYATRRALGVEEFLAERCPRC 159 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58611.13466.1 >prot_H-paniculata_contig58611.13466.1 ID=prot_H-paniculata_contig58611.13466.1|Name=mRNA_H-paniculata_contig58611.13466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp MPRNLRFMSTYSAGVTVLALSCGCARCTARTPVPDMLRNLVLAASAGSIPback to top mRNA from alignment at H-paniculata_contig58611:64..995+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58611.13466.1 ID=mRNA_H-paniculata_contig58611.13466.1|Name=mRNA_H-paniculata_contig58611.13466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=932bp|location=Sequence derived from alignment at H-paniculata_contig58611:64..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58611:64..995+ >mRNA_H-paniculata_contig58611.13466.1 ID=mRNA_H-paniculata_contig58611.13466.1|Name=mRNA_H-paniculata_contig58611.13466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig58611:64..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |