mRNA_H-paniculata_contig58611.13466.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58611.13466.1
Unique NamemRNA_H-paniculata_contig58611.13466.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KMQ2_9PHAE (Reverse transcriptase domain-containing protein n=16 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ2_9PHAE)

HSP 1 Score: 176 bits (445), Expect = 9.120e-46
Identity = 109/305 (35.74%), Postives = 156/305 (51.15%), Query Frame = -3
Query:   20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
            LAR+L  MPDKQ A L+ ++S T +  ++ER ++ +L   AC   DN  +W+LE  +  R    E  FF   C  +R  L P+Q+ QA +STG+GGLGL +   R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++ G+S E    +L P  V WA     E G    P +  L  HD       +   K+G  ++K ++   +  L +LP    PP  D+P+ G E  + A  R RS  G G  A  RA P D AR +   E+V   RR LGIE +LA RCP C
Sbjct:  701 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVRGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVDTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGIEEFLAERCPRC 1004          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JHZ7_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHZ7_9PHAE)

HSP 1 Score: 172 bits (436), Expect = 1.950e-45
Identity = 107/305 (35.08%), Postives = 155/305 (50.82%), Query Frame = -3
Query:   20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
            LAR+L  MPDKQ A L+ ++S T +  ++ER ++ +L   AC   DN  +W+LE  +  R    E  FF   C  +R  L P+Q+ QA +STG+GGLGL +   R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++  +S E    +L P  V WA     E G    P +  L  HD       +   ++G  V+K ++   +  L +LP    PP  D+P+ G E  + A  R RS  G G  A  RA P D AR +   E+V   RR LG+E +LA RCP C
Sbjct:  177 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHELGKAVNKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 480          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KUZ8_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUZ8_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 2.380e-45
Identity = 106/305 (34.75%), Postives = 155/305 (50.82%), Query Frame = -3
Query:   20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
            LAR+L  MPDKQ A L+ ++S T +  ++ER ++ +L   AC   DN  +W+LE  +  R    E  FF   C  +R  L P+Q+ QA +STG+GGLGL +   R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++  +S E    ++ P  V WA     E G    P +  L  HD       +   K+G  ++K ++   +  L +LP    PP  D+P+ G E  + A  R RS  G G  A  RA P D AR +   E+V   RR LG+E +LA RCP C
Sbjct:  247 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHKLVKGACKRLDNMVMWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGIIPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 550          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5K2M1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M1_9PHAE)

HSP 1 Score: 168 bits (426), Expect = 8.320e-45
Identity = 105/305 (34.43%), Postives = 152/305 (49.84%), Query Frame = -3
Query:   20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
            LAR+L  MPDKQ A  + ++S T +  ++ER ++ +L   AC   DN  +W+LE  +  R   +E  FF   C  +R  L P+Q+ QA +STG+GGLGL +   R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++ GVS E    +L P  V WA     E G    P +  L  HD       +   K+G  ++K ++   +  L +LP    PP  D P+ G E  + A  R R   G       RA P D AR +   E+V   RR LG+E +LA RCP C
Sbjct:  184 LARMLVRMPDKQEAHFVISQSLTQRSGYIERGINHKLVRGACERLDNMVMWVLEATMGLRDTEDEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVSTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDSPYGGQEARNMAYARTRCSQGQRGRTFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 487          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5K195_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K195_9PHAE)

HSP 1 Score: 166 bits (419), Expect = 2.590e-42
Identity = 104/305 (34.10%), Postives = 153/305 (50.16%), Query Frame = -3
Query:   20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
            LAR+L  MPDKQ A L+ ++S T +  ++ER ++  L   AC L DN  +W+LE  +  R    E  FF      +R  +  +Q+ QA +STG+GGLGL +   R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++  +S E    +L P  V WA     E G    P +  L  HD       +   K+G  ++K ++   +  L +LP    PP  D+P+ G E  + A  R RS  G G  A  RA P D AR +   E+V   RR LG+E +LA +CP C
Sbjct:  658 LARMLVRMPDKQVAHLVTSQSLTQRSGYIERGINHNLVRGACELLDNMVMWVLEATMGLRDTEVEEEFFQDDYQPDRFKIKTYQQAQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPAGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAEKCPRC 961          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JLG6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLG6_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 1.970e-37
Identity = 102/313 (32.59%), Postives = 150/313 (47.92%), Query Frame = -3
Query:   20 LARLLAHMPDKQAAMLIATKSRTLKIYFLERVMDAELSDQACALTDNDGLWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRL--------QATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 919
            LAR++  MPDKQ A L+ ++  T +   +ER ++ +L   AC   DN  +W+LE  +  R   +E  FF   C  +R   L    +        QA +S G+GGLGL +   R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++  +S E    +L P  V WA     E G    P +  L  HD       +   K+G  ++  ++  L+  L +LP    PP  D+P+ G E  + A  R RS  G G  A  RA P D AR +   E+V   RR LG+E +LA RCP C
Sbjct:  340 LARMVVRMPDKQVAHLVTSQLLTQRSGNIERGINHKLVRGACERLDNMVMWVLEATMGLRDAEDEEEFFQDDCQPDRFKRLAGALVPADAPPAAQARLSAGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHAISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINDIQLEKLMESLKHLPQEAVPPTRDNPYGGQEARNMAYARTRSSKGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 651          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KTK7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTK7_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.060e-34
Identity = 89/256 (34.77%), Postives = 125/256 (48.83%), Query Frame = -3
Query:   20 LWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 772
            +W+LE  +  R    E  FF   C  +R  L P+Q+ QA +STG+GGLGL +   R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++ GVS E    +L P  V WA     E G    P +  L  HD       +   K+G  V K ++   +  L ++P    PP  D+P+ G E  + A  R RS  G G  A  RA P D AR +   E+V   RR LG+E +LA RCP C
Sbjct:    3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLKPYQQSQARLSTGAGGLGLPAAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGVSVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAV-KIQLEKFMESLEHVPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 256          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JQ53_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ53_9PHAE)

HSP 1 Score: 136 bits (343), Expect = 4.710e-33
Identity = 85/256 (33.20%), Postives = 122/256 (47.66%), Query Frame = -3
Query:   20 LWMLENILEHRQPAEEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAV-----VRAACCRRSSRTLGERVQAHLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 772
            +W+LE  +  R    E  FF   C  +R  L P+Q+ QA +STG+G LGL     R +SA++        A        LGE V+  +PGT +V  +G  ++ L ++ G+S E    +L P  V WA     E G    P +  L  HD       +   K+G  ++K ++   +  L +LP    PP  D+P+ G E  + A  R RS  G G     RA   D AR +   E+V   RR LG+E +LA RCP C
Sbjct:    3 MWVLEATMGLRDTEVEEEFFQDDCQPDRFKLRPYQQAQARLSTGAGELGLPEAVMRRFSASLGNLVGTLPAVIAALRGPLGESVRVRIPGTVLVERMGDAIKELNQEHGISVEILKGILPPSWVEWALEPTGETGRRQ-PTVAELAAHDGESTTPRKAQHKLGKAINKIQLEKFMESLEHLPQEAVPPTRDNPYGGQEARNMAYARTRSSQGQGGHTFLRAAATDRAREIPSNEFVYATRRALGVEEFLAERCPRC 257          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5JTC7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC7_9PHAE)

HSP 1 Score: 108 bits (271), Expect = 9.100e-23
Identity = 81/258 (31.40%), Postives = 107/258 (41.47%), Query Frame = -3
Query:   20 EEHAFFDAGCPANRLNLLPHQRLQATMSTGSGGLGLASTWSRHWSAAVVRAACCRRSSRTLGERVQA---------------------HLPGTPMVRSLGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 730
            +E  FF   C  +R  L P+Q+ QA +STG+GGLGL              AA  RR S +LG  V                                        L  + GVS +    +L P  V WA     E G    P +  L  +D       +   K+G  V+K ++  L+  LG+LP    PP  D+P+ G E  + A  R RS  G G  A  RA P D AR +   E+V   RR LG+E +LA RCP C
Sbjct:  392 DEEEFFQDDCQPDRFKLKPYQQAQARLSTGAGGLGLP-------------AAVMRRFSASLGNLVGTLFAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLNREHGVSVKILKGILPPSWVEWAFEPPGETGRRQ-PTVAELAAYDGESTTPRKAQHKLGKAVNKIQLEKLIESLGHLPQEAVPPTSDNPYGGQEARNMAYARTRSSQGQGGHAFLRAAPTDRAREIPSNEFVYATRRALGVEEFLAERCPRC 635          
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Match: A0A6H5KDZ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDZ4_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 3.430e-14
Identity = 52/160 (32.50%), Postives = 74/160 (46.25%), Query Frame = -3
Query:   20 LGATLRVLIEQGGVSAEQQAAVLRPGLVVWAHGGRSEDGSLPTPNIDVLGGHDAPGRNSHRLHGKVGNLVHKAKITTLLSLLGNLPPAGRPPGPDDPFAGIEPADAAKTRFRSMSGTGVLAVQRAQPQDNARTVTPAEYVLMKRRFLGIEPYLAARCPCC 499
            +G  ++ L ++ GVS E    +L P  V WA     E      P +  L  HD       +   K+G  V K ++   +  L +LP    P   D+P+ G E  + A  R RS  G G  A  +A P + AR +   E+V   RR LG+E +LA RCP C
Sbjct:    1 MGDAIKELNQEHGVSVEILKGILPPSWVEWALEPAGET-RRRQPTVAELAAHDEESTTPRKAQHKLGKAVSKIQLEKFMESLEHLPQEAVPHTRDNPYGGQEARNMAYARTRSSQGQGEHAFLKAAPTERAREIPLNEFVYATRRALGVEEFLAERCPRC 159          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58611.13466.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5KMQ2_9PHAE9.120e-4635.74Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHZ7_9PHAE1.950e-4535.08Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KUZ8_9PHAE2.380e-4534.75Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K2M1_9PHAE8.320e-4534.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K195_9PHAE2.590e-4234.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JLG6_9PHAE1.970e-3732.59Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KTK7_9PHAE1.060e-3434.77Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQ53_9PHAE4.710e-3333.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC7_9PHAE9.100e-2331.40Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KDZ4_9PHAE3.430e-1432.50Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58611contigH-paniculata_contig58611:64..995 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size921
Cds size618
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58611.13466.1prot_H-paniculata_contig58611.13466.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58611 117..745 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.0852575-UTR-H-paniculata_contig58611:63..1161622930638.0852575-UTR-H-paniculata_contig58611:63..116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58611 64..116 +
1691481384.10734-UTR-H-paniculata_contig58611:63..1161691481384.10734-UTR-H-paniculata_contig58611:63..116Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58611 64..116 +
1622930638.1301894-UTR-H-paniculata_contig58611:745..9951622930638.1301894-UTR-H-paniculata_contig58611:745..995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58611 746..995 +
1691481384.141641-UTR-H-paniculata_contig58611:745..9951691481384.141641-UTR-H-paniculata_contig58611:745..995Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58611 746..995 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930638.0983796-CDS-H-paniculata_contig58611:116..6151622930638.0983796-CDS-H-paniculata_contig58611:116..615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58611 117..615 +
1691481384.1221297-CDS-H-paniculata_contig58611:116..6151691481384.1221297-CDS-H-paniculata_contig58611:116..615Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58611 117..615 +
1622930638.1131306-CDS-H-paniculata_contig58611:626..7451622930638.1131306-CDS-H-paniculata_contig58611:626..745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58611 627..745 +
1691481384.1329052-CDS-H-paniculata_contig58611:626..7451691481384.1329052-CDS-H-paniculata_contig58611:626..745Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58611 627..745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58611.13466.1

>prot_H-paniculata_contig58611.13466.1 ID=prot_H-paniculata_contig58611.13466.1|Name=mRNA_H-paniculata_contig58611.13466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=206bp
MPRNLRFMSTYSAGVTVLALSCGCARCTARTPVPDMLRNLVLAASAGSIP
ANGSSGPGGLPAGGRLPSSESKVVILALWTRLPTFPCSRCEFLPGASWPP
RTSMFGVGSDPSSLRPPWAHTTSPGRSTAACCSALTPPCSINTRRVAPNE
RTIGVPGRCACTRSPNVRDDLRQHAALTTAADQCLLHVEASPNPPEPVDM
VAWSR*
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mRNA from alignment at H-paniculata_contig58611:64..995+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58611.13466.1 ID=mRNA_H-paniculata_contig58611.13466.1|Name=mRNA_H-paniculata_contig58611.13466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=932bp|location=Sequence derived from alignment at H-paniculata_contig58611:64..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGTTACGTCCTCCGCTCCGCAGCATGGGCATCGAGCGGCTAAATAGGGC TCAATGCCAAGAAACCTCCGCTTCATGAGCACGTACTCTGCTGGAGTTAC GGTCCTGGCGTTGTCTTGTGGCTGTGCCCGTTGCACCGCGAGAACTCCAG TCCCCGACATGCTGCGGAATCTCGTTTTAGCCGCGTCGGCCGGTTCGATC CCTGCGAACGGGTCATCAGGGCCAGGTGGCCTACCGGCCGGGGGTAGGTT GCCAAGCAGCGAGAGCAAGGTCGTTATCTTGGCCTTGTGGACCAGATTGC CGACTTTCCCATGCAGTCGATGCGAGTTCCTCCCTGGCGCGTCGTGGCCT CCTAGGACGTCGATGTTCGGTGTAGGTAGCGATCCGTCTTCACTCCGTCC TCCGTGGGCCCACACGACCAGCCCGGGACGTAGCACCGCAGCTTGTTGTT CGGCGCTAACTCCTCCCTGTTCTATCAACACGCGGAGAGTCGCCCCTAAT GAGCGCACCATCGGTGTCCCGGGAAGATGTGCTTGCACCCGCTCCCCCAA CGGTCCCGACAAGTCCGCGATGATCTGCGGCAGCATGCCGCTCTCACCAC CGCTGCTGACCAGTGCCTGCTCCATGTCGAGGCGAGTCCTAACCCCCCTG AACCGGTCGACATGGTAGCCTGGAGTCGCTGATGGGGCAGCAGGTTGAGG CGGTTCGCCGGGCAGCCGGCGTCGAAGAAGGCGTGTTCTTCTGCTGGCTG CCTGTGTTCCAGGATGTTCTCCAACATCCATAGTCCGTCATTGTCGGTTA GTGCGCAGGCTTGGTCGGAGAGTTCGGCATCCATCACTCTCTCCAGGAAG TAGATCTTCAGGGTCCTGGACTTTGTGGCGATCAGCATCGCCGCTTGTTT GTCGGGCATATGCGCTAGTAGGCGCGCAAGGT
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Coding sequence (CDS) from alignment at H-paniculata_contig58611:64..995+

>mRNA_H-paniculata_contig58611.13466.1 ID=mRNA_H-paniculata_contig58611.13466.1|Name=mRNA_H-paniculata_contig58611.13466.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1236bp|location=Sequence derived from alignment at H-paniculata_contig58611:64..995+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCAAGAAACCTCCGCTTCATGAGCACGTACTCTGCTGGAGTTACGGT
CCTGGCGTTGTCTTGTGGCTGTGCCCGTTGCACCGCGAGAACTCCAGTCC
CCGACATGCTGCGGAATCTCGTTTTAGCCGCGTCGGCCGGTTCGATCCCT
GCGAACGGGTCATCAGGGCCAGGTGGCCTACCGGCCGGGGGTAGGTTGCC
AAGCAGCGAGAGCAAGGTCGTTATCTTGGCCTTGTGGACCAGATTGCCGA
CTTTCCCATGCAGTCGATGCGAGTTCCTCCCTGGCGCGTCGTGGCCTCCT
AGGACGTCGATGTTCGGTGTAGGTAGCGATCCGTCTTCACTCCGTCCTCC
GTGGGCCCACACGACCAGCCCGGGACGTAGCACCGCAGCTTGTTGTTCGG
CGCTAACTCCTCCCTGTTCTATCAACACGCGGAGAGTCGCCCCTAATGAG
CGCACCATCGGTGTCCCGGGAAGATGTGCTTGCACCCGCTCCCCCAACGA
TGCCAAGAAACCTCCGCTTCATGAGCACGTACTCTGCTGGAGTTACGGTC
CTGGCGTTGTCTTGTGGCTGTGCCCGTTGCACCGCGAGAACTCCAGTCCC
CGACATGCTGCGGAATCTCGTTTTAGCCGCGTCGGCCGGTTCGATCCCTG
CGAACGGGTCATCAGGGCCAGGTGGCCTACCGGCCGGGGGTAGGTTGCCA
AGCAGCGAGAGCAAGGTCGTTATCTTGGCCTTGTGGACCAGATTGCCGAC
TTTCCCATGCAGTCGATGCGAGTTCCTCCCTGGCGCGTCGTGGCCTCCTA
GGACGTCGATGTTCGGTGTAGGTAGCGATCCGTCTTCACTCCGTCCTCCG
TGGGCCCACACGACCAGCCCGGGACGTAGCACCGCAGCTTGTTGTTCGGC
GCTAACTCCTCCCTGTTCTATCAACACGCGGAGAGTCGCCCCTAATGAGC
GCACCATCGGTGTCCCGGGAAGATGTGCTTGCACCCGCTCCCCCAACGTC
CGCGATGATCTGCGGCAGCATGCCGCTCTCACCACCGCTGCTGACCAGTG
CCTGCTCCATGTCGAGGCGAGTCCTAACCCCCCTGAACCGGTCGACATGG
TAGCCTGGAGTCGCTGATCCGCGATGATCTGCGGCAGCATGCCGCTCTCA
CCACCGCTGCTGACCAGTGCCTGCTCCATGTCGAGGCGAGTCCTAACCCC
CCTGAACCGGTCGACATGGTAGCCTGGAGTCGCTGA
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