mRNA_H-paniculata_contig58600.13464.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58600.13464.1
Unique NamemRNA_H-paniculata_contig58600.13464.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A7V2LM34_9CHLR (Aminotransferase class V-fold PLP-dependent enzyme n=1 Tax=Caldilineae bacterium TaxID=2420332 RepID=A0A7V2LM34_9CHLR)

HSP 1 Score: 90.5 bits (223), Expect = 1.740e-19
Identity = 44/77 (57.14%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCRR 234
            QAH SL+KAA IAGLG+ N+R IE  + + L  DALAR + +DR  G +P FVCAT+GTT+S A+DPVR+I  +C+R
Sbjct:  182 QAHSSLEKAAMIAGLGSKNLRPIEVDETFALRPDALARQIAEDRAAGLIPAFVCATIGTTSSNAIDPVREIGEICQR 258          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A2V7NF82_9BACT (Aspartate aminotransferase family protein n=4 Tax=unclassified Gemmatimonadetes TaxID=234665 RepID=A0A2V7NF82_9BACT)

HSP 1 Score: 89.0 bits (219), Expect = 6.090e-19
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCRR 234
            QAH SL+KAA IAG+G  +VR IE    Y +  DAL RA+ +DR  G  P FVCATVGTT+S A+DPV  +A LCRR
Sbjct:  182 QAHSSLEKAAGIAGIGRRHVRAIEVDAGYAMRPDALERALEEDRRAGHTPFFVCATVGTTSSTAIDPVPAVAELCRR 258          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A2V9T136_9BACT (Aspartate aminotransferase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9T136_9BACT)

HSP 1 Score: 86.3 bits (212), Expect = 5.820e-18
Identity = 40/76 (52.63%), Postives = 56/76 (73.68%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGTN-VRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCR 231
            QAH S++KA  IAGLG + +R IE +  + +  DALA+ + +DR+NG +P FVCATVGTT+S A+DPV +I  +CR
Sbjct:  190 QAHSSIEKAVQIAGLGRDSLRLIEVHANFAMRPDALAQRIQEDRQNGLIPCFVCATVGTTSSNAIDPVPEIGRICR 265          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A2V9BXU9_9BACT (Aspartate aminotransferase family protein n=2 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9BXU9_9BACT)

HSP 1 Score: 85.5 bits (210), Expect = 1.110e-17
Identity = 41/76 (53.95%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCR 231
            QAH S++KA  IAGLG  N+R IE  + + +  DALA  +  DR+ G +P FVCATVGTT+S A+DPVR+I  +CR
Sbjct:  190 QAHSSIEKAVKIAGLGRQNLRLIEVDERFAMRPDALAAQLRQDRDAGRIPCFVCATVGTTSSNAIDPVREIGRICR 265          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A2V9V3Z8_9BACT (Aspartate aminotransferase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9V3Z8_9BACT)

HSP 1 Score: 85.1 bits (209), Expect = 1.490e-17
Identity = 42/76 (55.26%), Postives = 54/76 (71.05%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCR 231
            Q H S++KA  IAGLG+ N+R IE    + L  DALAR +  D++ G VP FVCAT+GTT+S A+DPVR+I  LCR
Sbjct:  190 QTHSSVEKAVKIAGLGSDNLRAIEVDQNFALRTDALARQIDADKKAGLVPCFVCATLGTTSSNAIDPVREIGRLCR 265          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A0S8H239_9BACT (Amino acid decarboxylase (Fragment) n=1 Tax=Phycisphaerae bacterium SM23_30 TaxID=1703411 RepID=A0A0S8H239_9BACT)

HSP 1 Score: 84.3 bits (207), Expect = 1.520e-17
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCRR 234
            QAH S++KA  IAGLG+ N+R IE  D + L  +ALA+ +  D++NG  P FVCATVGTT+S A+DP+  I  +CR+
Sbjct:   57 QAHSSIEKAVRIAGLGSDNLRLIEVDDHFALRPEALAKQIEQDKQNGLTPCFVCATVGTTSSNAIDPLGAIGKICRQ 133          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A2V7NK89_9BACT (Aspartate aminotransferase family protein n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7NK89_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 1.980e-17
Identity = 44/77 (57.14%), Postives = 54/77 (70.13%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCRR 234
            QAH SL+KAA +AG+G  NVR I+   A  +  DAL RA+ +DR  G  P FVCATVGTT+S A+DPV  IA +CRR
Sbjct:  182 QAHSSLEKAAGVAGVGRRNVRLIDVDAAQAMRPDALERAIAEDRRAGRTPFFVCATVGTTSSTAIDPVPAIAEICRR 258          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A2V9R9N3_9BACT (Aspartate aminotransferase family protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A2V9R9N3_9BACT)

HSP 1 Score: 84.7 bits (208), Expect = 2.000e-17
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCR 231
            QAH S++KA  IAG+G+ N+R IET + + +N +ALA A+  DR +G  P FVCATVGTT+S A+DPV  I  +CR
Sbjct:  182 QAHSSIEKAIKIAGIGSENLRLIETDENFAMNPEALAAAIEKDRADGLTPFFVCATVGTTSSNAIDPVPQIGEVCR 257          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A6H5J9H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H5_9PHAE)

HSP 1 Score: 84.0 bits (206), Expect = 2.130e-17
Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGTNVRCIETYDA-------YGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCRR 234
            QAH S+QKAA IAGLG+N+R I T  +       Y L+A  L+ AM +D   G  P+FV A VG+TN+CAVDPVR +   CRR
Sbjct:  263 QAHSSVQKAANIAGLGSNLRLIPTSGSCEDGQRCYTLDAAELSEAMREDEAAGLTPVFVSANVGSTNTCAVDPVRSLGEACRR 345          
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Match: A0A1W9LWD3_9DELT (Aspartate aminotransferase family protein n=1 Tax=Desulfobacteraceae bacterium IS3 TaxID=1934248 RepID=A0A1W9LWD3_9DELT)

HSP 1 Score: 84.3 bits (207), Expect = 2.740e-17
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    7 QAHCSLQKAATIAGLGT-NVRCIETYDAYGLNADALARAMHDDRENGFVPIFVCATVGTTNSCAVDPVRDIAMLCRR 234
            Q H S++KA  +AGLG  N+R IET ++  + ADALA+ +  D+E G +P FVCAT+GTT+S A+DP+ DI  +C +
Sbjct:  182 QTHSSVEKAVKVAGLGRENLRLIETDESLAMRADALAQQIRKDKEAGLIPCFVCATIGTTSSNAIDPIPDIGRICNK 258          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58600.13464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7V2LM34_9CHLR1.740e-1957.14Aminotransferase class V-fold PLP-dependent enzyme... [more]
A0A2V7NF82_9BACT6.090e-1958.44Aspartate aminotransferase family protein n=4 Tax=... [more]
A0A2V9T136_9BACT5.820e-1852.63Aspartate aminotransferase family protein n=1 Tax=... [more]
A0A2V9BXU9_9BACT1.110e-1753.95Aspartate aminotransferase family protein n=2 Tax=... [more]
A0A2V9V3Z8_9BACT1.490e-1755.26Aspartate aminotransferase family protein n=1 Tax=... [more]
A0A0S8H239_9BACT1.520e-1751.95Amino acid decarboxylase (Fragment) n=1 Tax=Phycis... [more]
A0A2V7NK89_9BACT1.980e-1757.14Aspartate aminotransferase family protein n=1 Tax=... [more]
A0A2V9R9N3_9BACT2.000e-1753.95Aspartate aminotransferase family protein n=1 Tax=... [more]
A0A6H5J9H5_9PHAE2.130e-1751.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1W9LWD3_9DELT2.740e-1749.35Aspartate aminotransferase family protein n=1 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58600contigH-paniculata_contig58600:363..808 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score82.4
Seed ortholog evalue1e-13
Seed eggNOG ortholog926550.CLDAP_30940
Preferred nameddc
KEGG rclassRC00299
KEGG koko:K01593
KEGG ReactionR00685,R00699,R00736,R02080,R02701,R04909
KEGG Pathwayko00350,ko00360,ko00380,ko00901,ko00950,ko00965,ko01100,ko01110,ko04726,ko04728,ko05030,ko05031,ko05034,map00350,map00360,map00380,map00901,map00950,map00965,map01100,map01110,map04726,map04728,map05030,map05031,map05034
KEGG ModuleM00037,M00042
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Pyridoxal-dependent decarboxylase conserved domain
EggNOG OGs2G7N6@200795,COG0076@1,COG0076@2
EC4.1.1.105,4.1.1.28
COG Functional cat.E
Best tax levelChloroflexi
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Exons2
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930637.8329973-CDS-H-paniculata_contig58600:362..4411622930637.8329973-CDS-H-paniculata_contig58600:362..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58600 363..441 +
1691481383.9595394-CDS-H-paniculata_contig58600:362..4411691481383.9595394-CDS-H-paniculata_contig58600:362..441Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58600 363..441 +
1622930637.855312-CDS-H-paniculata_contig58600:647..8081622930637.855312-CDS-H-paniculata_contig58600:647..808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58600 648..808 +
1691481383.9752836-CDS-H-paniculata_contig58600:647..8081691481383.9752836-CDS-H-paniculata_contig58600:647..808Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58600 648..808 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58600.13464.1prot_H-paniculata_contig58600.13464.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58600 363..808 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58600.13464.1

>prot_H-paniculata_contig58600.13464.1 ID=prot_H-paniculata_contig58600.13464.1|Name=mRNA_H-paniculata_contig58600.13464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MLQAHCSLQKAATIAGLGTNVRCIETYDAYGLNADALARAMHDDRENGFV
PIFVCATVGTTNSCAVDPVRDIAMLCRRR*
back to top

mRNA from alignment at H-paniculata_contig58600:363..808+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58600.13464.1 ID=mRNA_H-paniculata_contig58600.13464.1|Name=mRNA_H-paniculata_contig58600.13464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=446bp|location=Sequence derived from alignment at H-paniculata_contig58600:363..808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACAGGCGCATTGCTCTCTGCAGAAAGCAGCAACTATTGCCGGCCT CGGTACCAACGTGCGGTGCATTGAGACATGTGGGGGAAGAGTCGGAAAAG GTGAACCCTAAACGAGCTGTGTACTTACAGTAGCACCTATTTCTCAAGAA TAACGCCCCCAGGATGCGGTTGTATATTGCATTGCCAGCAACTGATGGAA TAGTGAATAAAAGGAAGAATATTTTGATTCAAGTATGCCTTTTTGTGTAC CCTCTCACCGCCCGTCGATCTCGGCAACAATACAGATGATGCGTACGGGC TTAATGCAGACGCTCTGGCGAGGGCTATGCACGATGATCGGGAAAACGGT TTTGTGCCGATCTTTGTCTGCGCGACTGTAGGCACCACCAACAGCTGCGC TGTCGATCCAGTTCGGGACATTGCGATGTTGTGTCGAAGAAGGTGA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig58600:363..808+

>mRNA_H-paniculata_contig58600.13464.1 ID=mRNA_H-paniculata_contig58600.13464.1|Name=mRNA_H-paniculata_contig58600.13464.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig58600:363..808+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTACAGGCGCATTGCTCTCTGCAGAAAGCAGCAACTATTGCCGGCCT
CGGTACCAACGTGCGGTGCATTGAGACATATGTTACAGGCGCATTGCTCT
CTGCAGAAAGCAGCAACTATTGCCGGCCTCGGTACCAACGTGCGGTGCAT
TGAGACATATGATGCGTACGGGCTTAATGCAGACGCTCTGGCGAGGGCTA
TGCACGATGATCGGGAAAACGGTTTTGTGCCGATCTTTGTCTGCGCGACT
GTAGGCACCACCAACAGCTGCGCTGTCGATCCAGTTCGGGACATTGCGAT
GTTGTGTCGAAGAAGGTGAATGATGCGTACGGGCTTAATGCAGACGCTCT
GGCGAGGGCTATGCACGATGATCGGGAAAACGGTTTTGTGCCGATCTTTG
TCTGCGCGACTGTAGGCACCACCAACAGCTGCGCTGTCGATCCAGTTCGG
GACATTGCGATGTTGTGTCGAAGAAGGTGA
back to top