mRNA_H-paniculata_contig5858.13461.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig5858.13461.1
Unique Name	mRNA_H-paniculata_contig5858.13461.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5KBN1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBN1_9PHAE)

HSP 1 Score: 60.8 bits (146), Expect = 1.030e-8
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = -1

Query:    4 LDSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEGIEMTVKKRRLPFAGNVLRMGDERLPNVVM 228
            L  H+ TL+  H   LLR +G Y R   T    SY  T+K +GC+ +E T+++RRL FAG   R  D RLP  +M
Sbjct:  181 LSGHYQTLRSIHHRLLLRVIG-YMRKEDTYRQLSYPQTLKRVGCQSVEATIRQRRLLFAGAFARQPDGRLPKRLM 254

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BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5L7R3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R3_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.560e-8
Identity = 32/75 (42.67%), Postives = 44/75 (58.67%), Query Frame = -1

Query:    4 LDSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEGIEMTVKKRRLPFAGNVLRMGDERLPNVVM 228
            L  H+ TL+  H   LLR +G YKR   T    SY  T+K +GC+ +E T+++RRL FA  + R  D RLP  +M
Sbjct:  245 LCGHYQTLRSIHHRLLLRVIG-YKRKKDTYRQLSYAQTLKRVGCQSVEATIRQRRLLFARALARQPDGRLPKRLM 318

[Close]

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5J747_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J747_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 4.650e-8
Identity = 43/105 (40.95%), Postives = 54/105 (51.43%), Query Frame = -1

Query:   16 LYS*GKRTRGPAVRLLH---VDTLL---------DSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEG-IEMTVKKRRLPFAGNVLRMGDERLP 291
            +Y   +  R   +RLL    V+TLL           H+  L E HR  L RC+G  KR   ++   SY   +   GCE  IE TV+KRRL FAG V+RM D RLP
Sbjct:    1 MYDGRRANRQLKIRLLQAEVVETLLYGCASWSPTAEHYTKLNETHRQFLTRCIGWSKRKR-SDRPLSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDSRLP 104

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BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5KN66_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN66_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 7.910e-8
Identity = 31/73 (42.47%), Postives = 44/73 (60.27%), Query Frame = -1

Query:    4 SHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEGIEMTVKKRRLPFAGNVLRMGDERLPNVVM 222
              + TL+  H   LLR +G Y+RM  T    SY  T+K +GC+ +E T+++RRL FAG + R  D RLP  +M
Sbjct:  713 DQYRTLRTIHHRLLLRVVG-YQRMKCTYRQLSYAQTLKRVGCQSVESTIRQRRLLFAGALARQPDGRLPKRLM 784

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BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5L649_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L649_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 8.270e-8
Identity = 36/79 (45.57%), Postives = 46/79 (58.23%), Query Frame = -1

Query:    4 TLLDSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGP-SYRVTIKSIGCEG-IEMTVKKRRLPFAGNVLRMGDERLPNVVM 234
            +L   H+  L E HR  L RC+G  +R    +H P SY   +   GCE  IE TV+KRRL FAG V+RM D RLP  ++
Sbjct:  136 SLTTEHYAKLNETHRQFLTRCVGWSRRKR--SHRPLSYAQAVIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLPKHIL 212

[Close]

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5KPA7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPA7_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 8.410e-8
Identity = 32/75 (42.67%), Postives = 43/75 (57.33%), Query Frame = -1

Query:    4 LDSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEGIEMTVKKRRLPFAGNVLRMGDERLPNVVM 228
            L  H+ TL+  H   LLR +G  +R   T    SY  T+K IGC+  E T+++RRL FAG + R  D RLP  +M
Sbjct:  146 LSGHYQTLRSIHHRLLLRVIGD-ERKKDTYRQLSYAQTLKRIGCQSAEATIRQRRLLFAGALARQPDGRLPKRLM 219

[Close]

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5J984_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J984_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.330e-7
Identity = 31/75 (41.33%), Postives = 44/75 (58.67%), Query Frame = -1

Query:    4 LDSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEGIEMTVKKRRLPFAGNVLRMGDERLPNVVM 228
            L  H+ TL+  H   LLR  G YKR   T    S+  T+K + C+ +E+T+++RRL FAG + R  D RLP  +M
Sbjct:  146 LSGHYQTLRSIHHRLLLRVTG-YKRKKDTFRQLSFAQTLKRVECQSVEVTLRQRRLLFAGALARQPDGRLPKRLM 219

[Close]

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5JS19_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS19_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.360e-7
Identity = 31/73 (42.47%), Postives = 43/73 (58.90%), Query Frame = -1

Query:    4 SHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEGIEMTVKKRRLPFAGNVLRMGDERLPNVVM 222
              + TL+  H   LLR +G Y+R   T    SY  T+K +GC+ +E T+++RRL FAG + R  D RLP  VM
Sbjct:  336 DQYRTLRTIHHRLLLRVIG-YQREKGTYRQLSYAQTLKRVGCQSVETTIRQRRLLFAGALARQPDGRLPKRVM 407

[Close]

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: UPI001AA1A1FE (hypothetical protein n=1 Tax=Vibrio parahaemolyticus TaxID=670 RepID=UPI001AA1A1FE)

HSP 1 Score: 56.6 bits (135), Expect = 1.730e-7
Identity = 30/77 (38.96%), Postives = 43/77 (55.84%), Query Frame = -1

Query:    4 TLLDSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEGIEMTVKKRRLPFAGNVLRMGDERLPNVVM 234
            TL   H   L+  H   LLR +G  +R+   +   SY   ++   CE IE T++KRRL FAG V+R  + RLP+ +M
Sbjct:   18 TLNADHFAKLRSAHHEVLLRVIGFQRRLRTDHTTLSYAKALRITRCESIETTIRKRRLFFAGAVVRQHEGRLPSRLM 94

[Close]

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Match: A0A6H5K3Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Y0_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 1.870e-7
Identity = 43/105 (40.95%), Postives = 54/105 (51.43%), Query Frame = -1

Query:   16 LYS*GKRTRGPAVRLLH---VDTLL---------DSHHGTLKEYHRGPLLRCLGIYKRMSPTNHGPSYRVTIKSIGCEG-IEMTVKKRRLPFAGNVLRMGDERLP 291
            +Y   +  R   +RLL    V+TLL           H+  L   HR  L RC+G  KR   ++  PSY   +   GCE  IE TV+KRRL FAG V+RM D RLP
Sbjct:  177 MYDRRRADRQLKIRLLQAEVVETLLYGCASWSLTAEHYTKLNGTHRQFLTRCIGWSKRKR-SDRPPSYAQALIQAGCEETIEATVRKRRLCFAGFVMRMEDNRLP 280

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig5858.13461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KBN1_9PHAE	1.030e-8	42.67	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L7R3_9PHAE	2.560e-8	42.67	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5J747_9PHAE	4.650e-8	40.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KN66_9PHAE	7.910e-8	42.47	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5L649_9PHAE	8.270e-8	45.57	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5KPA7_9PHAE	8.410e-8	42.67	Reverse transcriptase domain-containing protein n=...	[more]
A0A6H5J984_9PHAE	1.330e-7	41.33	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JS19_9PHAE	1.360e-7	42.47	Reverse transcriptase domain-containing protein n=...	[more]
UPI001AA1A1FE	1.730e-7	38.96	hypothetical protein n=1 Tax=Vibrio parahaemolytic...	[more]
A0A6H5K3Y0_9PHAE	1.870e-7	40.95	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig5858	contig	H-paniculata_contig5858:4343..4669 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Hectar predicted targeting category	other localisation
Exons	1
Model size	327
Cds size	327
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930637.3759887-CDS-H-paniculata_contig5858:4342..4669	1622930637.3759887-CDS-H-paniculata_contig5858:4342..4669	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig5858 4343..4669 +
1691481383.7614725-CDS-H-paniculata_contig5858:4342..4669	1691481383.7614725-CDS-H-paniculata_contig5858:4342..4669	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig5858 4343..4669 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig5858.13461.1	prot_H-paniculata_contig5858.13461.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig5858 4343..4669 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig5858:4343..4669+
coding sequence from alignment at H-paniculata_contig5858:4343..4669+

protein sequence of mRNA_H-paniculata_contig5858.13461.1

>prot_H-paniculata_contig5858.13461.1 ID=prot_H-paniculata_contig5858.13461.1|Name=mRNA_H-paniculata_contig5858.13461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=109bp
GHDHVWQAFVPHAQYIPRERKSALFHGHLNALASNTLDGDSVRRAVICRA
HPFVDAEASQQGATVVLLQRTVVRVEESVHVEQPYGRTSSTFALTIQILD
SGHIFGQS*

mRNA from alignment at H-paniculata_contig5858:4343..4669+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig5858.13461.1 ID=mRNA_H-paniculata_contig5858.13461.1|Name=mRNA_H-paniculata_contig5858.13461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=327bp|location=Sequence derived from alignment at H-paniculata_contig5858:4343..4669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCATGACCACGTTTGGCAGGCGTTCGTCCCCCATGCGCAATACATTCC
CCGCGAACGGAAGTCGGCGCTTTTTCACGGTCATCTCAATGCCCTCGCAT
CCAATACTCTTGATGGTGACTCGGTAAGACGGGCCGTGATTTGTAGGGCT
CATCCTTTTGTAGATGCCGAGGCATCGCAACAGGGGGCCACGGTGGTACT
CCTTCAACGTACCGTGGTGCGAGTCGAGGAGAGTGTCCACGTGGAGCAGC
CGTACGGCAGGACCTCGAGTACGTTTGCCCTAACTATACAAATATTGGAT
TCTGGTCACATTTTCGGGCAGTCTTAA

Coding sequence (CDS) from alignment at H-paniculata_contig5858:4343..4669+

>mRNA_H-paniculata_contig5858.13461.1 ID=mRNA_H-paniculata_contig5858.13461.1|Name=mRNA_H-paniculata_contig5858.13461.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=654bp|location=Sequence derived from alignment at H-paniculata_contig5858:4343..4669+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGTCATGACCACGTTTGGCAGGCGTTCGTCCCCCATGCGCAATACATTCC
CCGCGAACGGAAGTCGGCGCTTTTTCACGGTCATCTCAATGCCCTCGCAT
CCAATACTCTTGATGGTGACTCGGTAAGACGGGCCGTGATTTGTAGGGCT
CATCCTTTTGTAGATGCCGAGGCATCGCAACAGGGGGCCACGGTGGTACT
CCTTCAACGTACCGTGGTGCGAGTCGAGGAGAGTGTCCACGTGGAGCAGC
CGTACGGCAGGACCTCGAGTACGTTTGCCCTAACTATACAAATATTGGAT
TCTGGTCACATTTTCGGGCAGTCTTAAGGTCATGACCACGTTTGGCAGGC
GTTCGTCCCCCATGCGCAATACATTCCCCGCGAACGGAAGTCGGCGCTTT
TTCACGGTCATCTCAATGCCCTCGCATCCAATACTCTTGATGGTGACTCG
GTAAGACGGGCCGTGATTTGTAGGGCTCATCCTTTTGTAGATGCCGAGGC
ATCGCAACAGGGGGCCACGGTGGTACTCCTTCAACGTACCGTGGTGCGAG
TCGAGGAGAGTGTCCACGTGGAGCAGCCGTACGGCAGGACCTCGAGTACG
TTTGCCCTAACTATACAAATATTGGATTCTGGTCACATTTTCGGGCAGTC
TTAA