prot_H-paniculata_contig5857.13459.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5857.13459.1
Unique Nameprot_H-paniculata_contig5857.13459.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length243
Homology
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BLAST of mRNA_H-paniculata_contig5857.13459.1 vs. uniprot
Match: D8LNI7_ECTSI (SRP_SPB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNI7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 3.160e-47
Identity = 99/242 (40.91%), Postives = 149/242 (61.57%), Query Frame = 0 
Query:    1 MAMRRSLPVGRALFPATGLSRTTSGHLSSVFVAKQRNLPERRSGRPRDDRSGRVLLPSGEAASGSGVRRLGMWDSIQDKMTDRNASKQEEEFRKHVNQLAEMESFDLNDFYKLLEEPLSKWTAKMPWNTKQEELVTMKKQKEILESIPVAQRSNPSLIRERQKAAIAEKAQCSVEEVHSLLFKFREMRGMSNWLVERKRLGQQLPQSAGEVQEMLADPSGVPLTKFMKKKVAKSGQGMSFTF 242
            MAMRRSLP  R   P    S + +G ++    + + +      G  RD    RVLLP+G    G+GVR  G+ DS+QDK+ +RN +KQE++F++ + +L+  ESF+L+DF K++EEPL K++AK+PWN  +EEL  MK QK++LE +   QR NP  IR   +  IA++A  + E+V+  L  +RE++ M  WL  R++  +++P +  E+  M  DPSG  L  FMK K + SG+  SF F
Sbjct:    1 MAMRRSLPTLR---PIVSASVSGAGRMAPPSCSLRGSGCSGGGGGGRD---WRVLLPTGRGVEGAGVRGFGVMDSVQDKIINRNTAKQEKQFKEQMEELSLKESFNLDDFAKIIEEPLDKFSAKLPWNKSREELQAMKMQKKVLEGLTPLQRKNPESIRHGHRQRIADRAGVTTEDVNKALAAYRELKAMHGWLSTRRKRKERIPSTQEELHVMATDPSGTMLMNFMKVKRSNSGKP-SFAF 235
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5857.13459.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNI7_ECTSI3.160e-4740.91SRP_SPB domain-containing protein n=2 Tax=Ectocarp... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004125Signal recognition particle, SRP54 subunit, M-domainPFAMPF02978SRP_SPBcoord: 105..190
e-value: 2.1E-6
score: 28.3
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilyGENE3D1.10.260.30coord: 88..202
e-value: 1.1E-8
score: 37.2
IPR036891Signal recognition particle, SRP54 subunit, M-domain superfamilySUPERFAMILY47446Signal peptide-binding domaincoord: 87..192
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 25..242
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..11
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 20..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..24
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 12..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5857contigH-paniculata_contig5857:585..9352 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5857.13459.1mRNA_H-paniculata_contig5857.13459.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5857 531..10154 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5857.13459.1 ID=prot_H-paniculata_contig5857.13459.1|Name=mRNA_H-paniculata_contig5857.13459.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=243bp
MAMRRSLPVGRALFPATGLSRTTSGHLSSVFVAKQRNLPERRSGRPRDDR
SGRVLLPSGEAASGSGVRRLGMWDSIQDKMTDRNASKQEEEFRKHVNQLA
EMESFDLNDFYKLLEEPLSKWTAKMPWNTKQEELVTMKKQKEILESIPVA
QRSNPSLIRERQKAAIAEKAQCSVEEVHSLLFKFREMRGMSNWLVERKRL
GQQLPQSAGEVQEMLADPSGVPLTKFMKKKVAKSGQGMSFTF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004125Signal_recog_particle_SRP54_M
IPR036891Signal_recog_part_SRP54_M_sf