mRNA_H-paniculata_contig58549.13458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-paniculata_contig58549.13458.1
Unique Name	mRNA_H-paniculata_contig58549.13458.1
Type	mRNA
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)

Homology

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_HETA2 (Photosystem II D2 protein n=340 Tax=cellular organisms TaxID=131567 RepID=PSBD_HETA2)

HSP 1 Score: 652 bits (1683), Expect = 2.350e-236
Identity = 312/323 (96.59%), Postives = 319/323 (98.76%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            VGWSGLLLFP AYL++GGWFTGTTFVTSWYTHGLA+SYLEGCNFLTAAVSTP+NSMGHSL+LLWGPEAQGDFTRW QIGGLW F+ALHG+F LIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL
Sbjct:   29 VGWSGLLLFPTAYLAVGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLILLWGPEAQGDFTRWCQIGGLWTFVALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 351

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: A0A023HR93_NEOPR (Photosystem II D2 protein n=12 Tax=cellular organisms TaxID=131567 RepID=A0A023HR93_NEOPR)

HSP 1 Score: 642 bits (1657), Expect = 2.160e-232
Identity = 304/323 (94.12%), Postives = 316/323 (97.83%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            VGWSGLLL PCAYL++GGW TGTTFVTSWYTHGLA+SYLEGCNFLTAAVSTP+NSMGHSLL LWGPEAQGDFTRW QIGGLWAFIALHGSF LIGFCLRQFEIARLVG+RPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPS GVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA GIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIR+WMAAQDQPHENF+FPEEVLPRGNAL
Sbjct:   29 VGWSGLLLLPCAYLAVGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWAFIALHGSFGLIGFCLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAFGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRSWMAAQDQPHENFIFPEEVLPRGNAL 351

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_GALSU (Photosystem II D2 protein n=20 Tax=cellular organisms TaxID=131567 RepID=PSBD_GALSU)

HSP 1 Score: 641 bits (1654), Expect = 6.180e-232
Identity = 301/323 (93.19%), Postives = 316/323 (97.83%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            +GWSGLLLFPC+YL+LG WFTGTTFVTSWYTHGLA+SYLEGCNFLTAAVS+P+NSMGHSLL LWGPEAQGDFTRW QIGGLW F ALHG+F LIGFCLRQFEIARLVGIRPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPSFGVAAIFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDG+AANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTS+IGI+GLALNLRAYDFVSQELRAAEDPEFETFYTKN+LLNEGIRAWMA QDQPHENFVFPEEVLPRGNAL
Sbjct:   29 IGWSGLLLFPCSYLALGAWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAVFVSVFLIYPLGQASWFFAPSFGVAAIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGEAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSSIGIIGLALNLRAYDFVSQELRAAEDPEFETFYTKNLLLNEGIRAWMATQDQPHENFVFPEEVLPRGNAL 351

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_NEOYE (Photosystem II D2 protein n=59 Tax=Eukaryota TaxID=2759 RepID=PSBD_NEOYE)

HSP 1 Score: 637 bits (1644), Expect = 2.070e-230
Identity = 302/323 (93.50%), Postives = 315/323 (97.52%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            VGWSGLLLFPCAYL++GGW TGTTFVTSWYTHGLA+SYLEGCNFLTAAVSTP+NSMGHSLL LWGPEAQGDFTRW QIGGLWAFIALHGSF LIGFCLRQFEIARLVG+RPYNAIAFSGPI++FVSVFL+YPLGQASWFFAPS GVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDGDAA+TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSA GIVGLALNLRAYDFVSQELRAAEDPEFETFYTK IL +EGIR+WMAAQDQPHENF+FPEEVLPRGNAL
Sbjct:   29 VGWSGLLLFPCAYLAVGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWAFIALHGSFGLIGFCLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGDAADTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAFGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKIILXDEGIRSWMAAQDQPHENFIFPEEVLPRGNAL 351

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_CYAM1 (Photosystem II D2 protein n=6 Tax=Cyanidiaceae TaxID=265316 RepID=PSBD_CYAM1)

HSP 1 Score: 633 bits (1633), Expect = 9.810e-229
Identity = 297/323 (91.95%), Postives = 314/323 (97.21%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            +GWSGLLLFPC+YL+LG WFTGTTFVTSWYTHGLA+SYLEGCNFLTAAVS+P+NSMGHSLL LWGPEAQGDFTRW QIGGLW F ALHG+F LIGFCLRQFEIARLVG+RPYNAIAFSGPI++FVSVFLLYPLGQASWFFAPSFGVA IFRF+LFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATV+NTLFEDG+A++TFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFF+LFVPV GLW S+IGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL
Sbjct:   29 IGWSGLLLFPCSYLALGAWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSSPANSMGHSLLFLWGPEAQGDFTRWCQIGGLWTFTALHGAFGLIGFCLRQFEIARLVGLRPYNAIAFSGPIAVFVSVFLLYPLGQASWFFAPSFGVAGIFRFILFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVQNTLFEDGEASDTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFLLFVPVAGLWASSIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 351

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_GUITH (Photosystem II D2 protein n=56 Tax=cellular organisms TaxID=131567 RepID=PSBD_GUITH)

HSP 1 Score: 633 bits (1632), Expect = 1.390e-228
Identity = 298/323 (92.26%), Postives = 315/323 (97.52%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            +GWSGLLLFP +YLS+GGWFTGTTFVTSWYTHGLA+SYLEGCNF TAAVSTP+NSMGHSLLLLWGPEAQGDFTRW QIGGLWAF ALHG+F LIGFCLRQFEIARLVGIRPYNAIAFSGPI+IFVSVFL+YPLGQASWFFAPS GVAAIFRFLLF+QGFHN+TLNPFHMMGVAGILG ALLCAIHGATV+NT+FEDGDAANTFRAFTPTQSEETYSMVTANRFWSQ+FGVAFSNKRWLHFFMLFVP+ GLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKN+LLNEGIR+WMAAQDQPHENF+FPEEVLPRGNAL
Sbjct:   29 IGWSGLLLFPTSYLSIGGWFTGTTFVTSWYTHGLASSYLEGCNFFTAAVSTPANSMGHSLLLLWGPEAQGDFTRWCQIGGLWAFCALHGAFGLIGFCLRQFEIARLVGIRPYNAIAFSGPIAIFVSVFLMYPLGQASWFFAPSLGVAAIFRFLLFIQGFHNFTLNPFHMMGVAGILGAALLCAIHGATVQNTIFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQVFGVAFSNKRWLHFFMLFVPLAGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNLLLNEGIRSWMAAQDQPHENFIFPEEVLPRGNAL 351

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_PHYPA (Photosystem II D2 protein n=48 Tax=Embryophyta TaxID=3193 RepID=PSBD_PHYPA)

HSP 1 Score: 625 bits (1612), Expect = 1.680e-225
Identity = 293/323 (90.71%), Postives = 309/323 (95.67%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            VGWSGLLLFPCAY SLGGWFTGTTFVTSWYTHGLA+SYLEGCNFLTAAVSTP+NS+ HSLLLLWGPEAQGDFTRW Q+GGLW F+ALHG+FALIGF LRQFE+AR V +RPYNAIAFSGPI++FVSVFL+YPLGQ+ WFFAPSFGVAAIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SAIG+VGLALNLRAYDFVSQE+RAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHEN VFPEEVLPRGNAL
Sbjct:   31 VGWSGLLLFPCAYFSLGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLAHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFALIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLVFPEEVLPRGNAL 353

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_THEVB (Photosystem II D2 protein n=184 Tax=Cyanobacteria TaxID=1117 RepID=PSBD_THEVB)

HSP 1 Score: 624 bits (1609), Expect = 4.630e-225
Identity = 289/323 (89.47%), Postives = 311/323 (96.28%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            VGWSG+LLFPCAYL+LGGW TGTTFVTSWYTHGLA+SYLEGCNFLT AVSTP+NSMGHSLLLLWGPEAQGDFTRW Q+GGLW FIALHG+F LIGF LRQFEIARLVG+RPYNAIAFS PI++FVSVFL+YPLGQ+SWFFAPSFGVAAIFRFLLF QGFHNWTLNPFHMMGVAG+LGGALLCAIHGATVENTLF+DG+ A+TFRAF PTQ+EETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SAIG+VGLALNLR+YDF+SQE+RAAEDPEFETFYTKN+LLNEGIRAWMA QDQPHENFVFPEEVLPRGNAL
Sbjct:   30 VGWSGILLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGCNFLTVAVSTPANSMGHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFGLIGFMLRQFEIARLVGVRPYNAIAFSAPIAVFVSVFLIYPLGQSSWFFAPSFGVAAIFRFLLFFQGFHNWTLNPFHMMGVAGVLGGALLCAIHGATVENTLFQDGEGASTFRAFNPTQAEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRSYDFISQEIRAAEDPEFETFYTKNLLLNEGIRAWMAPQDQPHENFVFPEEVLPRGNAL 352

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: PSBD_CHAVU (Photosystem II D2 protein n=10 Tax=Streptophyta TaxID=35493 RepID=PSBD_CHAVU)

HSP 1 Score: 624 bits (1609), Expect = 4.800e-225
Identity = 293/323 (90.71%), Postives = 308/323 (95.36%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            VGWSGLLLFPCAY SLGGW TGTTFVTSWYTHGLA+SYLEGCNFLTAAVSTP+NSM HSLLLLWGPEAQGDFTRW Q+GGLW FIALHG+FALIGF LRQFE+AR V +RPYNAIAFSGPIS+FVSVFL+YPLGQ+ WFFAPSFGVAAIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFG+AFSNKRWLHFFMLFVPVTGLW SAIG+VGLALNLRAYDFVSQE+RA+EDPEFETFYTKNILLNEGIRAWMAAQDQPHEN VFPEEVLPRGNAL
Sbjct:   31 VGWSGLLLFPCAYFSLGGWLTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSMAHSLLLLWGPEAQGDFTRWCQLGGLWTFIALHGAFALIGFMLRQFELARSVQLRPYNAIAFSGPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGIAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRASEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLVFPEEVLPRGNAL 353

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BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Match: A0A7G7XPQ0_PHLCA (Photosystem II D2 protein n=2 Tax=Embryophyta TaxID=3193 RepID=A0A7G7XPQ0_PHLCA)

HSP 1 Score: 623 bits (1606), Expect = 7.050e-225
Identity = 292/323 (90.40%), Postives = 308/323 (95.36%), Query Frame = 1

Query:    1 VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVSTPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQFEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIFRFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAANTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENFVFPEEVLPRGNAL 969
            VGWSGLLLFPCAY SLGGWFTGTTFVTSWYTHGLA+SYLEGCNFLTAAVSTP+NS+ HSLLLLWGPEAQGDFTRW Q+GGLW F+ALHG+FA IGF LRQFE+AR V +RPYNAIAFSGPI++FVSVFL+YPLGQ+ WFFAPSFGVAAIFRF+LF QGFHNWTLNPFHMMGVAG+LG ALLCAIHGATVENTLFEDGD ANTFRAF PTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLW SAIG+VGLALNLRAYDFVSQE+RAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHEN VFPEEVLPRGNAL
Sbjct:   13 VGWSGLLLFPCAYFSLGGWFTGTTFVTSWYTHGLASSYLEGCNFLTAAVSTPANSLSHSLLLLWGPEAQGDFTRWCQLGGLWTFVALHGAFASIGFMLRQFELARSVQLRPYNAIAFSGPIAVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSAIGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLVFPEEVLPRGNAL 335

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig58549.13458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
PSBD_HETA2	2.350e-236	96.59	Photosystem II D2 protein n=340 Tax=cellular organ...	[more]
A0A023HR93_NEOPR	2.160e-232	94.12	Photosystem II D2 protein n=12 Tax=cellular organi...	[more]
PSBD_GALSU	6.180e-232	93.19	Photosystem II D2 protein n=20 Tax=cellular organi...	[more]
PSBD_NEOYE	2.070e-230	93.50	Photosystem II D2 protein n=59 Tax=Eukaryota TaxID...	[more]
PSBD_CYAM1	9.810e-229	91.95	Photosystem II D2 protein n=6 Tax=Cyanidiaceae Tax...	[more]
PSBD_GUITH	1.390e-228	92.26	Photosystem II D2 protein n=56 Tax=cellular organi...	[more]
PSBD_PHYPA	1.680e-225	90.71	Photosystem II D2 protein n=48 Tax=Embryophyta Tax...	[more]
PSBD_THEVB	4.630e-225	89.47	Photosystem II D2 protein n=184 Tax=Cyanobacteria ...	[more]
PSBD_CHAVU	4.800e-225	90.71	Photosystem II D2 protein n=10 Tax=Streptophyta Ta...	[more]
A0A7G7XPQ0_PHLCA	7.050e-225	90.40	Photosystem II D2 protein n=2 Tax=Embryophyta TaxI...	[more]

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Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig58549	contig	H-paniculata_contig58549:32..1003 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	661.8
Seed ortholog evalue	1.7e-187
Seed eggNOG ortholog	2880.D1J6Z4
Preferred name	psbD
KEGG ko	ko:K02706
KEGG Pathway	ko00195,ko01100,map00195,map01100
KEGG Module	M00161
Hectar predicted targeting category	signal peptide
GOs	GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0009536,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464
EggNOG free text desc.	photosynthetic electron transport in photosystem II
EggNOG OGs	2CNIT@1,2QWJF@2759
EC	1.10.3.9
COG Functional cat.	C
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko00002,ko00194,ko01000
Exons	1
Model size	972
Cds size	972
Stop	1
Start	0

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622930637.0817397-CDS-H-paniculata_contig58549:31..1003	1622930637.0817397-CDS-H-paniculata_contig58549:31..1003	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig58549 32..1003 -
1691481383.6452403-CDS-H-paniculata_contig58549:31..1003	1691481383.6452403-CDS-H-paniculata_contig58549:31..1003	Halopteris paniculata Hal_grac_a_UBK monoicous	CDS	H-paniculata_contig58549 32..1003 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig58549.13458.1	prot_H-paniculata_contig58549.13458.1	Halopteris paniculata Hal_grac_a_UBK monoicous	polypeptide	H-paniculata_contig58549 32..1003 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-paniculata_contig58549:32..1003-
coding sequence from alignment at H-paniculata_contig58549:32..1003-

protein sequence of mRNA_H-paniculata_contig58549.13458.1

>prot_H-paniculata_contig58549.13458.1 ID=prot_H-paniculata_contig58549.13458.1|Name=mRNA_H-paniculata_contig58549.13458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=324bp
VGWSGLLLFPCAYLSLGGWFTGTTFVTSWYTHGLATSYLEGCNFLTAAVS
TPSNSMGHSLLLLWGPEAQGDFTRWIQIGGLWAFIALHGSFALIGFCLRQ
FEIARLVGIRPYNAIAFSGPISIFVSVFLLYPLGQASWFFAPSFGVAAIF
RFLLFLQGFHNWTLNPFHMMGVAGILGGALLCAIHGATVENTLFEDGDAA
NTFRAFTPTQSEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGL
WTSAIGIVGLALNLRAYDFVSQELRAAEDPEFETFYTKNILLNEGIRAWM
AAQDQPHENFVFPEEVLPRGNAL*

mRNA from alignment at H-paniculata_contig58549:32..1003-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-paniculata_contig58549.13458.1 ID=mRNA_H-paniculata_contig58549.13458.1|Name=mRNA_H-paniculata_contig58549.13458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=972bp|location=Sequence derived from alignment at H-paniculata_contig58549:32..1003- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGGTTGGTCAGGTTTACTTTTATTTCCATGTGCTTATCTATCTCTTGG
TGGTTGGTTTACAGGAACAACCTTTGTTACATCATGGTATACACATGGAT
TAGCAACTTCATATTTAGAAGGTTGTAATTTTTTAACAGCCGCAGTTTCA
ACGCCTTCAAATAGTATGGGACATTCTCTTTTACTTTTATGGGGTCCAGA
AGCTCAAGGTGATTTCACACGTTGGATCCAAATTGGTGGGTTATGGGCTT
TTATAGCTTTACATGGCTCATTTGCTTTAATTGGATTTTGTTTACGTCAA
TTCGAAATTGCACGTTTAGTTGGGATCCGTCCTTACAATGCTATAGCTTT
TTCAGGGCCAATTTCAATCTTCGTTTCCGTTTTTTTATTATACCCATTAG
GACAAGCAAGTTGGTTCTTTGCACCCAGTTTTGGTGTTGCAGCTATATTC
CGTTTCTTATTATTCCTGCAAGGTTTCCATAACTGGACATTAAACCCATT
CCACATGATGGGAGTTGCTGGTATCTTAGGTGGTGCATTATTATGTGCTA
TTCATGGTGCTACTGTAGAGAATACTTTATTTGAAGATGGTGACGCTGCA
AATACTTTCCGTGCTTTCACACCGACACAATCTGAAGAAACATATTCTAT
GGTAACAGCAAACCGTTTTTGGTCACAAATTTTTGGAGTAGCCTTTTCAA
ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTTACAGGATTA
TGGACTAGTGCTATTGGGATTGTAGGACTTGCTCTTAACTTAAGAGCTTA
TGATTTTGTATCACAAGAGCTTCGTGCAGCAGAAGATCCAGAATTTGAAA
CATTCTATACTAAAAACATTTTATTAAACGAAGGTATCCGTGCTTGGATG
GCTGCACAAGATCAGCCACATGAAAACTTTGTATTCCCTGAGGAGGTTTT
ACCACGTGGAAACGCCCTTTAA

Coding sequence (CDS) from alignment at H-paniculata_contig58549:32..1003-

>mRNA_H-paniculata_contig58549.13458.1 ID=mRNA_H-paniculata_contig58549.13458.1|Name=mRNA_H-paniculata_contig58549.13458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1944bp|location=Sequence derived from alignment at H-paniculata_contig58549:32..1003- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTAGGTTGGTCAGGTTTACTTTTATTTCCATGTGCTTATCTATCTCTTGG
TGGTTGGTTTACAGGAACAACCTTTGTTACATCATGGTATACACATGGAT
TAGCAACTTCATATTTAGAAGGTTGTAATTTTTTAACAGCCGCAGTTTCA
ACGCCTTCAAATAGTATGGGACATTCTCTTTTACTTTTATGGGGTCCAGA
AGCTCAAGGTGATTTCACACGTTGGATCCAAATTGGTGGGTTATGGGCTT
TTATAGCTTTACATGGCTCATTTGCTTTAATTGGATTTTGTTTACGTCAA
TTCGAAATTGCACGTTTAGTTGGGATCCGTCCTTACAATGCTATAGCTTT
TTCAGGGCCAATTTCAATCTTCGTTTCCGTTTTTTTATTATACCCATTAG
GACAAGCAAGTTGGTTCTTTGCACCCAGTTTTGGTGTTGCAGCTATATTC
CGTTTCTTATTATTCCTGCAAGGTTTCCATAACTGGACATTAAACCCATT
CCACATGATGGGAGTTGCTGGTATCTTAGGTGGTGCATTATTATGTGCTA
TTCATGGTGCTACTGTAGAGAATACTTTATTTGAAGATGGTGACGCTGCA
AATACTTTCCGTGCTTTCACACCGACACAATCTGAAGAAACATATTCTAT
GGTAACAGCAAACCGTTTTTGGTCACAAATTTTTGGAGTAGCCTTTTCAA
ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTTACAGGATTA
TGGACTAGTGCTATTGGGATTGTAGGACTTGCTCTTAACTTAAGAGCTTA
TGATTTTGTATCACAAGAGCTTCGTGCAGCAGAAGATCCAGAATTTGAAA
CATTCTATACTAAAAACATTTTATTAAACGAAGGTATCCGTGCTTGGATG
GCTGCACAAGATCAGCCACATGAAAACTTTGTATTCCCTGAGGAGGTTTT
ACCACGTGGAAACGCCCTTTAAGTAGGTTGGTCAGGTTTACTTTTATTTC
CATGTGCTTATCTATCTCTTGGTGGTTGGTTTACAGGAACAACCTTTGTT
ACATCATGGTATACACATGGATTAGCAACTTCATATTTAGAAGGTTGTAA
TTTTTTAACAGCCGCAGTTTCAACGCCTTCAAATAGTATGGGACATTCTC
TTTTACTTTTATGGGGTCCAGAAGCTCAAGGTGATTTCACACGTTGGATC
CAAATTGGTGGGTTATGGGCTTTTATAGCTTTACATGGCTCATTTGCTTT
AATTGGATTTTGTTTACGTCAATTCGAAATTGCACGTTTAGTTGGGATCC
GTCCTTACAATGCTATAGCTTTTTCAGGGCCAATTTCAATCTTCGTTTCC
GTTTTTTTATTATACCCATTAGGACAAGCAAGTTGGTTCTTTGCACCCAG
TTTTGGTGTTGCAGCTATATTCCGTTTCTTATTATTCCTGCAAGGTTTCC
ATAACTGGACATTAAACCCATTCCACATGATGGGAGTTGCTGGTATCTTA
GGTGGTGCATTATTATGTGCTATTCATGGTGCTACTGTAGAGAATACTTT
ATTTGAAGATGGTGACGCTGCAAATACTTTCCGTGCTTTCACACCGACAC
AATCTGAAGAAACATATTCTATGGTAACAGCAAACCGTTTTTGGTCACAA
ATTTTTGGAGTAGCCTTTTCAAATAAACGTTGGTTACATTTCTTTATGTT
ATTTGTACCAGTTACAGGATTATGGACTAGTGCTATTGGGATTGTAGGAC
TTGCTCTTAACTTAAGAGCTTATGATTTTGTATCACAAGAGCTTCGTGCA
GCAGAAGATCCAGAATTTGAAACATTCTATACTAAAAACATTTTATTAAA
CGAAGGTATCCGTGCTTGGATGGCTGCACAAGATCAGCCACATGAAAACT
TTGTATTCCCTGAGGAGGTTTTACCACGTGGAAACGCCCTTTAA