mRNA_H-paniculata_contig58435.13450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58435.13450.1
Unique NamemRNA_H-paniculata_contig58435.13450.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: A0A6G6D7A3_ECTSI (Photosystem II CP47 reaction center protein n=55 Tax=Phaeophyceae TaxID=2870 RepID=A0A6G6D7A3_ECTSI)

HSP 1 Score: 493 bits (1270), Expect = 2.170e-172
Identity = 231/246 (93.90%), Postives = 239/246 (97.15%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P  TRLGVSDSWTGWDIAGE++EPI +LWCYEGVAY+HIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCF FGAFHVTGFFGPG+WVSDAYGLTGQ QPV+P+WGP GFNPFNPGGIASHH+AAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE SLNEGLSESEAWSSLPDK
Sbjct:   64 PFMTRLGVSDSWTGWDIAGERSEPIASLWCYEGVAYTHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFGFGAFHVTGFFGPGIWVSDAYGLTGQVQPVAPSWGPSGFNPFNPGGIASHHMAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEVSLNEGLSESEAWSSLPDK 309
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: PSBB_TRICV (Photosystem II CP47 reaction center protein n=85 Tax=Sar TaxID=2698737 RepID=PSBB_TRICV)

HSP 1 Score: 435 bits (1118), Expect = 2.470e-149
Identity = 201/246 (81.71%), Postives = 223/246 (90.65%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P  TRLG++DSW GW I GE       +W +EGVA SHIILSG+CFLAA+WHWVYWDLELFRDPRTGEP+LDLPKIFGIHLFLSGLLCF FGAFHVTG FGPG+WVSDAYG+TG+ QPV+PAWG +GFNPFNPGGIA+HHIAAG FG+ AG FHLT+RPPQRLYRALRMGNIETVLSSSIAAVFFAAF+TSGTMWYG+A TPIELFGPTRYQWDSGYFQQEIER+VETS++EGLSES+AWS +PDK
Sbjct:   64 PFMTRLGITDSWGGWSITGESVSN-PGIWSFEGVALSHIILSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGVTGKVQPVAPAWGADGFNPFNPGGIAAHHIAAGIFGIFAGIFHLTVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVTSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVETSVSEGLSESQAWSRIPDK 308
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: D4NY66_GALSU (Photosystem II CP47 reaction center protein n=2 Tax=cellular organisms TaxID=131567 RepID=D4NY66_GALSU)

HSP 1 Score: 428 bits (1100), Expect = 1.320e-146
Identity = 200/248 (80.65%), Postives = 223/248 (89.92%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVT--LWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P  TRLGV DSW GW + GE    +V   +W +EGVA SHIILSGL FLAA+WHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSG+LCF+FGAFH+TG FGPG+WVSDAYGLTG+ QPV+P+WGPEGFNPFNPGGIASHHIAAG  G+LAG FHL++RPPQRLYRALRMGNIETVLSSSIAAVFFAAF+T+GTMWYGSATTPIELFGPTRYQWDSGYFQQEI+RRV+  L++GLS SE+WS +PDK
Sbjct:   64 PFMTRLGVVDSWGGWSVTGES---VVNPGIWSFEGVALSHIILSGLLFLAAIWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGILCFSFGAFHITGLFGPGIWVSDAYGLTGKVQPVAPSWGPEGFNPFNPGGIASHHIAAGIIGILAGIFHLSVRPPQRLYRALRMGNIETVLSSSIAAVFFAAFVTAGTMWYGSATTPIELFGPTRYQWDSGYFQQEIQRRVDNYLSQGLSYSESWSKIPDK 308
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: A0A1C9CDW4_PORSO (Photosystem II CP47 reaction center protein n=1 Tax=Porphyridium sordidum TaxID=28024 RepID=A0A1C9CDW4_PORSO)

HSP 1 Score: 427 bits (1097), Expect = 3.650e-146
Identity = 197/246 (80.08%), Postives = 221/246 (89.84%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P  TRLGV+DSW GW I GE       +W +EGVA +HI+LSGL FLAA+WHW+YWDLELFRDPRTGEP+LDLPKIFGIHL L+ +LCF FGAFHVTG FGPG+WVSDAYG+TG+ QPV+PAWGPEGFNPFNPGG+ASHHIAAG+ G+LAG FHL++RPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIER+VE SL+EGLS ++AWS +PDK
Sbjct:   63 PFMTRLGVTDSWGGWSITGESVSN-PGIWSFEGVALTHIVLSGLLFLAAIWHWIYWDLELFRDPRTGEPALDLPKIFGIHLLLASILCFGFGAFHVTGLFGPGIWVSDAYGITGKVQPVAPAWGPEGFNPFNPGGVASHHIAAGTVGILAGVFHLSIRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERQVENSLSEGLSLNDAWSRIPDK 307
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: Q4G3C5_EMIHU (Photosystem II CP47 reaction center protein n=20 Tax=Eukaryota TaxID=2759 RepID=Q4G3C5_EMIHU)

HSP 1 Score: 427 bits (1097), Expect = 3.770e-146
Identity = 200/246 (81.30%), Postives = 220/246 (89.43%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P   RLGV+DSW GW I GE       +W +EGVA +HI+LSG+CFLAA+WHWVYWDLELFRDPRTGEP+LDLPKIFGIHLFLS LLCF FGAFHVTG FGPG+WVSDAYG+TG+ Q V+PAWG EGFNPFNPGGIASHHIAAG  G+LAG FHLT+RPPQRLYRALRMGNIETVLSSSI+AVFFAAFITSGTMWYG+ATTPIELFGPTRYQWDSGYFQQEIERRVE+SL+EGLS S+AWS +PDK
Sbjct:   64 PFMARLGVTDSWGGWSITGESVSN-PGIWSFEGVALTHIVLSGMCFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLFLSSLLCFGFGAFHVTGTFGPGIWVSDAYGITGRVQAVAPAWGAEGFNPFNPGGIASHHIAAGILGLLAGVFHLTIRPPQRLYRALRMGNIETVLSSSISAVFFAAFITSGTMWYGAATTPIELFGPTRYQWDSGYFQQEIERRVESSLSEGLSLSQAWSRIPDK 308
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: A0A7S2V2W1_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V2W1_9STRA)

HSP 1 Score: 423 bits (1087), Expect = 1.240e-144
Identity = 195/246 (79.27%), Postives = 217/246 (88.21%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P  TR+G++DSW GW I G+ T     LW YEGVA +HI+LSG  FLAA+WHWVYWDLELFRDP++G+P LDLPKIFGIHLFLSGLLCF FGAFHVTG FGPG+WVSDAYGLTG+ QP +P+WGPEGFNPFNPGG+A+HH+AAG+ GVLAG FHL +RPPQRLYRAL MGNIETVLSSSIAAVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVE SL   LSE+EAWS +PDK
Sbjct:   64 PFMTRIGITDSWGGWSITGDSTSN-PGLWSYEGVALTHIVLSGTLFLAAIWHWVYWDLELFRDPKSGDPGLDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDAYGLTGKVQPAAPSWGPEGFNPFNPGGVAAHHMAAGTVGVLAGTFHLVVRPPQRLYRALSMGNIETVLSSSIAAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVEASLTGNLSENEAWSRIPDK 308
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: A0A3G2QYB8_9STRA (Photosystem II CP47 reaction center protein n=14 Tax=Ochrophyta TaxID=2696291 RepID=A0A3G2QYB8_9STRA)

HSP 1 Score: 421 bits (1083), Expect = 5.000e-144
Identity = 194/247 (78.54%), Postives = 223/247 (90.28%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEK-TEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P   RLG+++SW GW I GE  T P   +W +EGVA +HI+LSGL FLAA+WHWVYWDL+LF+DPRTGEP+LDLPKIFGIHL LSG LCF FGAFHVTG FGPG+WVSDA+GLTG+ QPV+P+WGPEGFNPFNPGGIASHHIAAG+ G++AG FHLT+RPPQRLYRALRMGNIETVLSSSI+AVF+AAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETS+++ LSE++AWS +PDK
Sbjct:   64 PFMARLGITESWGGWTITGESSTTP--GIWSFEGVALTHIVLSGLLFLAAIWHWVYWDLDLFQDPRTGEPALDLPKIFGIHLLLSGFLCFGFGAFHVTGLFGPGIWVSDAFGLTGRVQPVAPSWGPEGFNPFNPGGIASHHIAAGTLGIIAGIFHLTVRPPQRLYRALRMGNIETVLSSSISAVFWAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSVSQNLSETDAWSQIPDK 308
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: A0A0F6SCS3_BANFU (Photosystem II P680 chlorophyll A apoprotein n=1 Tax=Bangia fuscopurpurea TaxID=101920 RepID=A0A0F6SCS3_BANFU)

HSP 1 Score: 415 bits (1066), Expect = 4.450e-143
Identity = 192/246 (78.05%), Postives = 215/246 (87.40%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P   RLGV+DSW GW I GE       LW +EGVA +HI+LSG+ FLAA+WHWVYWDLELFRDPRTGEP+LDLPKIFGIHL LS LLCF FGAFHVTG FGPG+WVSD YG+TG+  PV+PAWGPEGFNPFNPGG+ASHHIAAG+ G+LAG FHLT+RPPQRLYRALRMGNIETVLSSSI+AVFF+AFIT GTMWYGSATTPIELFGPTRYQWDSGYFQQEIE+RVE ++ +G + SEAWS +PDK
Sbjct:   64 PFMARLGVTDSWGGWSITGESVSN-PGLWSFEGVALTHIVLSGMLFLAAIWHWVYWDLELFRDPRTGEPALDLPKIFGIHLLLSSLLCFGFGAFHVTGLFGPGMWVSDGYGVTGKVLPVAPAWGPEGFNPFNPGGVASHHIAAGTVGILAGVFHLTVRPPQRLYRALRMGNIETVLSSSISAVFFSAFITCGTMWYGSATTPIELFGPTRYQWDSGYFQQEIEKRVENAIADGAAPSEAWSRIPDK 308
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BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: A0A2U9NM32_9STRA (Photosystem II CP47 reaction center protein n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A2U9NM32_9STRA)

HSP 1 Score: 419 bits (1076), Expect = 5.750e-143
Identity = 190/246 (77.24%), Postives = 217/246 (88.21%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P  TRLG++DSW GW I GE       LW +EGVA SHI+LSG+CFLAA+WHWVYWDLELF+DPRTG+ +LDLP +FGIHLFLSGLLCF FGAFHVTG FGPG+W+SDAYG+TG+ QPV+P+WG +GFNPFN GGIA+HHIAAG FG+ AG FHLT+RPPQRLYR LRMGNIET+LSSSIAAVFFAAFITSGTMWYG+A TPIELFGPTRYQWDSGYFQQEIER+VE S+ EGL+ES+AWS +PDK
Sbjct:   64 PFMTRLGITDSWGGWSITGESVSN-PGLWSFEGVALSHIVLSGMCFLAAIWHWVYWDLELFKDPRTGQTALDLPNVFGIHLFLSGLLCFGFGAFHVTGLFGPGIWISDAYGITGKVQPVAPSWGADGFNPFNSGGIAAHHIAAGIFGIFAGVFHLTVRPPQRLYRGLRMGNIETILSSSIAAVFFAAFITSGTMWYGAAATPIELFGPTRYQWDSGYFQQEIERQVEASVTEGLTESQAWSRIPDK 308
[Close]
BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Match: A0A7U0QGP2_OLILU (Photosystem II CP47 reaction center protein n=13 Tax=Ochrophyta TaxID=2696291 RepID=A0A7U0QGP2_OLILU)

HSP 1 Score: 418 bits (1074), Expect = 1.120e-142
Identity = 194/246 (78.86%), Postives = 219/246 (89.02%), Query Frame = 1 
Query:    1 PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAVWHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFFGPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLAGGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK 738
            P  TRLG++DSW GW I+GE       LW +EGVA +HI+LSGLCFLAA+WHWVYWDLELFR P T EP+LDLPKIFGIHLFLSGLLCF FGAFHVTG FGPG+WVSD+YGLTG+ Q   P+WGPEGFNPFNPGG+A+HHIAAG+FG+LAG FH+T+RPPQRLYRALRMGNIETVLSSSI+AVFFAAF+TSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERR+ETSL + +S S+AWS +PDK
Sbjct:   64 PFMTRLGITDSWGGWSISGESVSN-PGLWSFEGVALTHIVLSGLCFLAAIWHWVYWDLELFRAP-TREPALDLPKIFGIHLFLSGLLCFGFGAFHVTGLFGPGIWVSDSYGLTGKVQAAIPSWGPEGFNPFNPGGVAAHHIAAGTFGILAGVFHITVRPPQRLYRALRMGNIETVLSSSISAVFFAAFVTSGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRIETSLEQNVSLSDAWSEIPDK 307
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58435.13450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6G6D7A3_ECTSI2.170e-17293.90Photosystem II CP47 reaction center protein n=55 T... [more]
PSBB_TRICV2.470e-14981.71Photosystem II CP47 reaction center protein n=85 T... [more]
D4NY66_GALSU1.320e-14680.65Photosystem II CP47 reaction center protein n=2 Ta... [more]
A0A1C9CDW4_PORSO3.650e-14680.08Photosystem II CP47 reaction center protein n=1 Ta... [more]
Q4G3C5_EMIHU3.770e-14681.30Photosystem II CP47 reaction center protein n=20 T... [more]
A0A7S2V2W1_9STRA1.240e-14479.27Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A3G2QYB8_9STRA5.000e-14478.54Photosystem II CP47 reaction center protein n=14 T... [more]
A0A0F6SCS3_BANFU4.450e-14378.05Photosystem II P680 chlorophyll A apoprotein n=1 T... [more]
A0A2U9NM32_9STRA5.750e-14377.24Photosystem II CP47 reaction center protein n=2 Ta... [more]
A0A7U0QGP2_OLILU1.120e-14278.86Photosystem II CP47 reaction center protein n=13 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58435contigH-paniculata_contig58435:274..1011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score502.3
Seed ortholog evalue1.3e-139
Seed eggNOG ortholog2880.D1J718
Preferred namepsbB
KEGG koko:K02704
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00161
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0008150,GO:0008152,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009987,GO:0010207,GO:0010287,GO:0015979,GO:0016020,GO:0016043,GO:0019684,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
EggNOG free text desc.photosynthetic electron transport in photosystem II
EggNOG OGs28JG1@1,2QRV6@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Exons1
Model size738
Cds size738
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930636.1229901-CDS-H-paniculata_contig58435:273..10111622930636.1229901-CDS-H-paniculata_contig58435:273..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58435 274..1011 +
1691481383.1584363-CDS-H-paniculata_contig58435:273..10111691481383.1584363-CDS-H-paniculata_contig58435:273..1011Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58435 274..1011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58435.13450.1prot_H-paniculata_contig58435.13450.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58435 274..1011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58435.13450.1

>prot_H-paniculata_contig58435.13450.1 ID=prot_H-paniculata_contig58435.13450.1|Name=mRNA_H-paniculata_contig58435.13450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=246bp
PATTRLGVSDSWTGWDIAGEKTEPIVTLWCYEGVAYSHIILSGLCFLAAV
WHWVYWDLELFRDPRTGEPSLDLPKIFGIHLFLSGLLCFAFGAFHVTGFF
GPGVWVSDAYGLTGQAQPVSPAWGPEGFNPFNPGGIASHHIAAGSFGVLA
GGFHLTLRPPQRLYRALRMGNIETVLSSSIAAVFFAAFITSGTMWYGSAT
TPIELFGPTRYQWDSGYFQQEIERRVETSLNEGLSESEAWSSLPDK
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mRNA from alignment at H-paniculata_contig58435:274..1011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58435.13450.1 ID=mRNA_H-paniculata_contig58435.13450.1|Name=mRNA_H-paniculata_contig58435.13450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at H-paniculata_contig58435:274..1011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCAACGACTAGATTAGGTGTATCCGATTCTTGGACTGGATGGGATAT
TGCAGGGGAAAAAACTGAACCAATTGTAACTTTATGGTGTTATGAAGGTG
TAGCATATAGTCATATAATATTATCTGGTCTTTGCTTTTTAGCCGCTGTT
TGGCATTGGGTTTACTGGGATCTTGAACTATTCCGTGATCCAAGAACTGG
AGAACCATCTTTAGATTTACCTAAAATTTTTGGTATTCATTTATTTTTAT
CTGGTTTATTATGTTTTGCTTTTGGTGCATTTCATGTGACTGGATTCTTT
GGACCTGGTGTTTGGGTTTCGGATGCCTATGGTTTAACAGGCCAAGCTCA
ACCAGTATCTCCAGCCTGGGGTCCTGAAGGTTTTAATCCATTTAATCCTG
GAGGAATTGCTTCACATCATATAGCTGCAGGTAGTTTTGGTGTTTTAGCA
GGTGGTTTTCATCTAACTTTACGCCCACCTCAACGCTTATATCGTGCATT
AAGAATGGGAAATATTGAAACAGTACTTTCAAGTAGTATTGCTGCTGTAT
TTTTTGCTGCTTTTATTACATCGGGAACTATGTGGTATGGTTCAGCAACA
ACTCCAATAGAATTATTTGGACCAACAAGATATCAATGGGATAGTGGTTA
TTTTCAACAAGAAATTGAACGTCGTGTTGAAACATCTTTAAATGAAGGAT
TATCTGAAAGTGAAGCTTGGTCAAGTCTTCCTGATAAA
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Coding sequence (CDS) from alignment at H-paniculata_contig58435:274..1011+

>mRNA_H-paniculata_contig58435.13450.1 ID=mRNA_H-paniculata_contig58435.13450.1|Name=mRNA_H-paniculata_contig58435.13450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1476bp|location=Sequence derived from alignment at H-paniculata_contig58435:274..1011+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCTGCAACGACTAGATTAGGTGTATCCGATTCTTGGACTGGATGGGATAT
TGCAGGGGAAAAAACTGAACCAATTGTAACTTTATGGTGTTATGAAGGTG
TAGCATATAGTCATATAATATTATCTGGTCTTTGCTTTTTAGCCGCTGTT
TGGCATTGGGTTTACTGGGATCTTGAACTATTCCGTGATCCAAGAACTGG
AGAACCATCTTTAGATTTACCTAAAATTTTTGGTATTCATTTATTTTTAT
CTGGTTTATTATGTTTTGCTTTTGGTGCATTTCATGTGACTGGATTCTTT
GGACCTGGTGTTTGGGTTTCGGATGCCTATGGTTTAACAGGCCAAGCTCA
ACCAGTATCTCCAGCCTGGGGTCCTGAAGGTTTTAATCCATTTAATCCTG
GAGGAATTGCTTCACATCATATAGCTGCAGGTAGTTTTGGTGTTTTAGCA
GGTGGTTTTCATCTAACTTTACGCCCACCTCAACGCTTATATCGTGCATT
AAGAATGGGAAATATTGAAACAGTACTTTCAAGTAGTATTGCTGCTGTAT
TTTTTGCTGCTTTTATTACATCGGGAACTATGTGGTATGGTTCAGCAACA
ACTCCAATAGAATTATTTGGACCAACAAGATATCAATGGGATAGTGGTTA
TTTTCAACAAGAAATTGAACGTCGTGTTGAAACATCTTTAAATGAAGGAT
TATCTGAAAGTGAAGCTTGGTCAAGTCTTCCTGATAAACCTGCAACGACT
AGATTAGGTGTATCCGATTCTTGGACTGGATGGGATATTGCAGGGGAAAA
AACTGAACCAATTGTAACTTTATGGTGTTATGAAGGTGTAGCATATAGTC
ATATAATATTATCTGGTCTTTGCTTTTTAGCCGCTGTTTGGCATTGGGTT
TACTGGGATCTTGAACTATTCCGTGATCCAAGAACTGGAGAACCATCTTT
AGATTTACCTAAAATTTTTGGTATTCATTTATTTTTATCTGGTTTATTAT
GTTTTGCTTTTGGTGCATTTCATGTGACTGGATTCTTTGGACCTGGTGTT
TGGGTTTCGGATGCCTATGGTTTAACAGGCCAAGCTCAACCAGTATCTCC
AGCCTGGGGTCCTGAAGGTTTTAATCCATTTAATCCTGGAGGAATTGCTT
CACATCATATAGCTGCAGGTAGTTTTGGTGTTTTAGCAGGTGGTTTTCAT
CTAACTTTACGCCCACCTCAACGCTTATATCGTGCATTAAGAATGGGAAA
TATTGAAACAGTACTTTCAAGTAGTATTGCTGCTGTATTTTTTGCTGCTT
TTATTACATCGGGAACTATGTGGTATGGTTCAGCAACAACTCCAATAGAA
TTATTTGGACCAACAAGATATCAATGGGATAGTGGTTATTTTCAACAAGA
AATTGAACGTCGTGTTGAAACATCTTTAAATGAAGGATTATCTGAAAGTG
AAGCTTGGTCAAGTCTTCCTGATAAA
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