prot_H-paniculata_contig5840.13445.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5840.13445.1
Unique Nameprot_H-paniculata_contig5840.13445.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length352
Homology
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: A0A6H5KMP8_9PHAE (C2H2-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMP8_9PHAE)

HSP 1 Score: 153 bits (387), Expect = 6.430e-40
Identity = 152/305 (49.84%), Postives = 176/305 (57.70%), Query Frame = 0
Query:    1 MSRPPSVAQFLKRAGLSKRPRPKTEKRRHQQQKIHSVPHSQPEHSTKPSTIDGSSTTTSEGNPPKNTPAHHLKKEAQG----DV-VDDQIAALERELEXXXXXXXXXXXXXXXTDSSGEDREGAISGDAICGRINK---------QGYKLVSPLDSEKIEPLPRHLLPQPGCGVSK--KQAKKRSRVVRPDEGGRGVGGGLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLHQEXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGKAHVELLQATMTRQGKRVPGAQTGTRS 289
            M RPP+++Q LKRAGL+KR RP         + + + P    + + K   +DG                    +   G    DV VDDQIAALEREL+                D S  D E +IS                   +  KLVSPL++EKIEPLP HLLP+PGCGV K  K+ KK S  V       G   GL SAV ELLANYEARSSERVPFYCRVCKFQG +LE LE+HK E LH  XXXXXXXXXXXXXXXXXXXXXXXXXXX  GKAH+E LQ+ M+RQGK VPG + G  S
Sbjct:    1 MFRPPTMSQLLKRAGLAKRSRPAG-------RGVDATPSPANQSNNKRQRVDGXXXXXXXXXXXXXXXXXXXSRSENGASAKDVTVDDQIAALERELKG--------------ADVSSSDAESSISSXXXXXXXXXXXXXXXERGRATKLVSPLEAEKIEPLPAHLLPRPGCGVHKDNKKKKKPSAAVGTTALP-GPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKAHLEKLQSMMSRQGKWVPGGRGGPGS 283          
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: D7FWN0_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWN0_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 4.200e-34
Identity = 162/356 (45.51%), Postives = 187/356 (52.53%), Query Frame = 0
Query:    1 MSRPPSVAQFLKRAGLSKRPRPKTEKRRHQQQKIHSVPHSQPEHSTKPSTIDGSSTTTSE--------------GNPPKNTPAHHLKKEAQGDVVDDQIAALERELEXXXXXXXXXXXXXXXTDSSGEDREGAISGDAI--------CGRINKQGYKLVSPLDSEKIEPLPRHLLPQPGCGVSKKQAKKRSRVVRPDE--GGRGVGG---GLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLHQEXXXXXXXXXXXXXXXXXXXXXXXXXXXLAGKAHVELLQATMTRQGKRVPGAQTGT---RSTN----RDGAGGTSYPPQYALGGARGTGRGGRGGAGG 322
            MS PP+++Q LKRAGL+KRPRP         + + + P +  +   K   +D                      G     T A  +        VDDQIAALEREL+                + S  D E                 GR   +  KLVSPL+ EKIEPLP HLLP+PGCGV K    K+     P    G   + G   GL SAV ELLANYEARSSERVPFYCRVCKFQG +LE LE+HK E LH  XXXXXXXXXXXXXXXXXXXXXXXXXXX      +E LQ+TM+RQGK VPG   G    RS N    R+  GG  +    A G A G GRG  GG GG
Sbjct:    1 MSGPPTMSQLLKRAGLAKRPRPAG-------RGVDATPSTASQSKRKRPRVDXXXXXXXXXXXXXXXXXXXXXXGRSENGTSAKDV-------AVDDQIAALERELKG--------------ANDSSSDAEXXXXXXXXXXXXXXRGAGRERGRVAKLVSPLEVEKIEPLPAHLLPRPGCGVHK---DKKXXXXXPSAAVGTTALPGPSQGLDSAVKELLANYEARSSERVPFYCRVCKFQGDSLEALEKHKEEPLHVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLEKLQSTMSRQGKWVPGGWGGPGSERSANGYSGRENGGGR-WRGSDARGWAAGRGRGRDGGRGG 324          
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: A0A835Z659_9STRA (C2H2-type domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z659_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 1.120e-11
Identity = 31/49 (63.27%), Postives = 39/49 (79.59%), Query Frame = 0
Query:  184 GLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLHQE 232
            GL  AV ELLANYEA+S+ER+P+YCRVCKFQG ++E+L  H+   LH E
Sbjct:    2 GLEGAVNELLANYEAKSAERIPYYCRVCKFQGASVEDLAAHRQTQLHTE 50          
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: A0A4D9D0V7_9STRA (C2H2-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0V7_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.350e-11
Identity = 54/144 (37.50%), Postives = 67/144 (46.53%), Query Frame = 0
Query:  129 INKQGYKLVSPLDSEK-IEPLPRHLLPQPGCG----------VSKKQAKKRSRVVRPD--------EGGRGV----------------------GGGLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLHQ 231
            I K G  L S L  E  I PLP HLLP P C            S  ++ +R R+ R +        EG  G                       G GLA  V ELL+NY+  SSER PFYCR+C+FQG++LE+L  HK   LH+
Sbjct:   72 IEKGGAVLKSRLAKEAAIPPLPPHLLPLPECKGKGGSRVPLPASDGRSGRRKRLTRKEKIASDRMQEGNGGAQRPGDPAGSLPPLQASSSASSAGAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHR 215          
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: A0A812U600_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812U600_SYMMI)

HSP 1 Score: 69.3 bits (168), Expect = 1.210e-10
Identity = 40/98 (40.82%), Postives = 53/98 (54.08%), Query Frame = 0
Query:  143 EKIEPLPRHLLPQPGCGV----------SKKQAKKRSRVVRPDEGGRGVGGGLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLH 230
            ++I+ LPR  LP P CG+           KK  KK+S +      G+    GL   V ELL +Y   S E+ PFYCRVC+F G +L +LE+HK   LH
Sbjct:    1 DRIQSLPRQYLPDPKCGMPRKGSCGVLKEKKPKKKKSELAADPLAGQV--NGLEKTVNELLRHYVPASLEKKPFYCRVCRFTGTDLGDLEKHKASELH 96          
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: W7TIZ9_9STRA (C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TIZ9_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.460e-10
Identity = 30/50 (60.00%), Postives = 38/50 (76.00%), Query Frame = 0
Query:  182 GGGLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLHQ 231
            G GLA  V ELL+NY+  SSER PFYCR+C+FQG++LE+L  HK   LH+
Sbjct:   31 GAGLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHR 80          
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: I2CRP9_NANGC (C2h2 zinc finger protein (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRP9_NANGC)

HSP 1 Score: 65.9 bits (159), Expect = 4.730e-10
Identity = 29/48 (60.42%), Postives = 37/48 (77.08%), Query Frame = 0
Query:  184 GLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLHQ 231
            GLA  V ELL+NY+  SSER PFYCR+C+FQG++LE+L  HK   LH+
Sbjct:    2 GLAQTVAELLSNYQPASSERRPFYCRICRFQGQSLEDLAHHKKGELHR 49          
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Match: B7FRV3_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FRV3_PHATC)

HSP 1 Score: 57.0 bits (136), Expect = 1.210e-5
Identity = 46/157 (29.30%), Postives = 70/157 (44.59%), Query Frame = 0
Query:   79 DVVDDQIAALERELEXXXXXXXXXXXXXXXTDSSGEDREGAISGDAICGRINKQGYKLVSPLDSEKIEPLPRHLLPQPGC----GVSKKQAKKRSRVVRPDEG-GRGVGGGLASAVGELLANYEARSSERVPFYCRVCKFQGKNLEELEEHKLELLH 230
            D +D++I  LE EL                   + +D  G +    +C          +S +  ++IEPLP +LLP        G+ +  A +R    + ++   + V  GL +AV E+L  Y  RSSER+PFYCRVC  Q  + +    HK    H
Sbjct:   47 DDIDEEIRRLEAELANESDEDEHDSSDVETNSETEDDSRGTV----LC----------LSSVQKDRIEPLPSNLLPSNRKRSLKGIDRVNASERDDADQSNKKKSKLVSSGLEAAVKEVLDGYVPRSSERLPFYCRVCAQQMSDEDSFTAHKETEFH 189          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5840.13445.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KMP8_9PHAE6.430e-4049.84C2H2-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FWN0_ECTSI4.200e-3445.51C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A835Z659_9STRA1.120e-1163.27C2H2-type domain-containing protein (Fragment) n=1... [more]
A0A4D9D0V7_9STRA2.350e-1137.50C2H2-type domain-containing protein n=1 Tax=Nannoc... [more]
A0A812U600_SYMMI1.210e-1040.82Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
W7TIZ9_9STRA4.460e-1060.00C2h2 zinc finger n=1 Tax=Nannochloropsis gaditana ... [more]
I2CRP9_NANGC4.730e-1060.42C2h2 zinc finger protein (Fragment) n=1 Tax=Nannoc... [more]
B7FRV3_PHATC1.210e-529.30Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 218..238
NoneNo IPR availableGENE3D3.30.160.60coord: 225..280
e-value: 2.7E-8
score: 35.2
NoneNo IPR availablePFAMPF12874zf-metcoord: 243..265
e-value: 1.3E-7
score: 31.7
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 206..230
e-value: 6.6
score: 14.9
coord: 241..265
e-value: 0.062
score: 22.4
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 243..265
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 234..271

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5840contigH-paniculata_contig5840:7032..11406 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5840.13445.1mRNA_H-paniculata_contig5840.13445.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5840 6821..12076 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5840.13445.1 ID=prot_H-paniculata_contig5840.13445.1|Name=mRNA_H-paniculata_contig5840.13445.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=352bp
MSRPPSVAQFLKRAGLSKRPRPKTEKRRHQQQKIHSVPHSQPEHSTKPST
IDGSSTTTSEGNPPKNTPAHHLKKEAQGDVVDDQIAALERELEQNNSDDG
SSSSTDDDTDSSGEDREGAISGDAICGRINKQGYKLVSPLDSEKIEPLPR
HLLPQPGCGVSKKQAKKRSRVVRPDEGGRGVGGGLASAVGELLANYEARS
SERVPFYCRVCKFQGKNLEELEEHKLELLHQEAAKKERKISRCTLCKKQF
TSPPQLQEHLAGKAHVELLQATMTRQGKRVPGAQTGTRSTNRDGAGGTSY
PPQYALGGARGTGRGGRGGAGGFRGRGGWRGGRGRGGQAIRGRGGAGRGW
S*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf