mRNA_H-paniculata_contig58382.13442.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58382.13442.1
Unique NamemRNA_H-paniculata_contig58382.13442.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A1W7R602_AEDAL (Putative copia-2 aa-i (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R602_AEDAL)

HSP 1 Score: 66.6 bits (161), Expect = 7.050e-10
Identity = 50/162 (30.86%), Postives = 66/162 (40.74%), Query Frame = 1
Query:    1 ETRVCFQCNEPGHLKMNCPQRTCPICKGIGHGESSHRLSAMFSSDGFRDNVEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELIFDYETCSNLFVTMANGETLPIEGYGKMLVWTKD-RGEIHKFSLSRVAHVPGLDTNLFS 483
            ++RVCF C +PGHLK NC Q     C  + +   S +     +      +V  G  A + G GE              P D     W  DSGAT HMT +       E      V +A+GE   + G G+      D  GE  +  L  V  VPGL + L S
Sbjct:  219 DSRVCFYCKQPGHLKRNCRQFL-KECNKVENSTQSKKEDKSKAKASQAQSVSDGPLAWMVGYGE--------------PAD-----WYVDSGATRHMTGNRRFFSKLEEAKFASVILADGEKSEVRGVGEGRFHVIDGNGEAVEVMLHDVLFVPGLTSGLIS 360          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A8D8KT35_CULPI (Copia protein n=6 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8KT35_CULPI)

HSP 1 Score: 60.8 bits (146), Expect = 8.310e-8
Identity = 49/159 (30.82%), Postives = 64/159 (40.25%), Query Frame = 1
Query:   10 VCFQCNEPGHLKMNCPQRTCPICKGIGHGESSHRLSAMFSSDGFRDNVEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELIFDYETCSNLFVTMANGETLPIEGYGK-MLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            VC+ C EPGH K+NCP+      K  G G +  + +    SD           AR      F + +E                WV DSGA+AHMT                +T+ANG    I G G   +V      +  K S+S V  VPGL T+L S
Sbjct:  213 VCYNCGEPGHFKVNCPELAEDQRKSAGGGNAKAKAA---QSD-----------ARCVA---FTTGVERNAR------------WVIDSGASAHMTNDRSFFTSLSEFDGGGITLANGTKTAICGVGSGEVVGIDGEAQPVKISISEVKFVPGLTTSLIS 342          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A6H5II87_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5II87_9HYME)

HSP 1 Score: 60.8 bits (146), Expect = 8.790e-8
Identity = 47/164 (28.66%), Postives = 76/164 (46.34%), Query Frame = 1
Query:    1 ETRVCFQCNEPGHLKMNCP--QRTCPICKGIGHGESSHRLSAMFSSDGFRDNVEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELIFDY-ETCSNLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            E+R C+ CN+PGHLK NC   QR     K   +  S+H   +  +  GF    E+   + V    E AS   +   D+ + +D  E  W +DSGA+ H+T   E   D  E+     + + + +   I+G G +++     G+  +  L  V  +P +  NL S
Sbjct:  117 ESRACYHCNKPGHLKANCRIRQRDLKRNKQRDNNRSNHGKDSN-ARVGFVYTFENEEISNVCAFSEGASHWTM--PDEIMRLDASES-WFSDSGASQHITSRREWFHDLVESSCEESIFLGDDKACKIKGSGTIIIDRYINGKKFRGQLENVLFIPDIKKNLLS 276          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A6H5J355_9HYME (Uncharacterized protein n=1 Tax=Trichogramma brassicae TaxID=86971 RepID=A0A6H5J355_9HYME)

HSP 1 Score: 58.5 bits (140), Expect = 5.540e-7
Identity = 45/169 (26.63%), Postives = 74/169 (43.79%), Query Frame = 1
Query:    1 ETRVCFQCNEPGHLKMNCPQRTCPICKGIGHGESSHRLSAMFSSDGFRDNVEHGFTARVAGQGEFASVIELIE-------EDKPVPVDGCEEFWVADSGATAHMTPSNELIFDY-ETCSNLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            E+R C+ CN+PGHLK NC  R   +       E + +     S+ G   N   GF      + E ++V    E        D+ + +D  E  W +DSGA+ H+T   E   D  E+     + + + +   I+G G +++     G+  +  L  V  +P +  NL S
Sbjct:  117 ESRACYYCNKPGHLKANCRIRQRDL-------ERNKQRDNNRSNYGKDSNARVGFVCTFENE-EISNVCAFSEGASHWTMPDEIMRLDASES-WFSDSGASQHITSRREWFHDLVESSCEESIFLGDDKACKIKGSGTIIIDRYINGKKFRGQLENVLFIPDIKKNLLS 276          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Pentapetalae TaxID=1437201 RepID=POLX_TOBAC)

HSP 1 Score: 57.8 bits (138), Expect = 1.020e-6
Identity = 49/164 (29.88%), Postives = 69/164 (42.07%), Query Frame = 1
Query:    7 RVCFQCNEPGHLKMNCPQRTCPICKGIGHGESSHR-----LSAMFSSDGFRDNVEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELIFDYETCSNLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            R C+ CN+PGH K +CP          G GE+S +      +AM  ++   DNV                V+ + EE++ + + G E  WV D+ A+ H TP  +L   Y       V M N     I G G + + T     +    L  V HVP L  NL S
Sbjct:  230 RNCYNCNQPGHFKRDCPNPR------KGKGETSGQKNDDNTAAMVQNN---DNV----------------VLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTL---VLKDVRHVPDLRMNLIS 365          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A8J6LGS5_TENMO (Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepID=A0A8J6LGS5_TENMO)

HSP 1 Score: 57.8 bits (138), Expect = 1.060e-6
Identity = 45/161 (27.95%), Postives = 68/161 (42.24%), Query Frame = 1
Query:    7 RVCFQCNEPGHLKMNCPQRTCPICKGIGHGESSHRLSAMFSSDGFRDNVEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELIFDYET-CSNLFVTMANGETLPIEGYGKMLV-WTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            R CF+C++PGH+  NCP +     K   + +   +  A               T+R  G   F SV + I E          E W+ADSGA+AHMT +     +Y    +   + + N E +   G G++ V         H+  L+ V  VP +  NL S
Sbjct: 1339 RKCFKCHQPGHIAKNCPNK-----KATANSDVREKKGAN--------------TSRAEGDA-FVSVFDEIAES---------EMWLADSGASAHMTRNRNYFVNYTPFAAPKVICVGNNEKILAYGCGQINVEMNVGNSTWHQNHLNNVWFVPDIGRNLMS 1470          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A225UGS0_9STRA (Integrase, catalytic core protein (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UGS0_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 2.030e-6
Identity = 43/141 (30.50%), Postives = 67/141 (47.52%), Query Frame = 1
Query:   82 GIGHGESSHRLSAMFSSDGFRDN------VEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELIFDYETCS-NLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            G G+G  S+    +  S G   N      ++     +V G     SV   I ED+          W+ DSGATAHMTP  + +F+Y   S +++VT+A+G+ + + G G + +   D   I    +  V ++PGLD  L S
Sbjct:  188 GKGYGRKSNNGRRLVGSKGKCFNCGQAGHMKRDCPVKVNGDSNDDSVF-AIGEDRSAE-------WLIDSGATAHMTPHRDDLFEYSAMSKDMYVTIADGKKIRVAGTGSVRLTGIDAKSIR---MVEVLYIPGLDRRLLS 317          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.050e-6
Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  259 WVADSGATAHMTPSNELIFDYETCS-NLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            W+ DSGATAHMTP    +F+YE    N+ VT+A+G+ + + G G + +   D   I    +  V H+PGLD  L S
Sbjct:  263 WLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLS 335          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.100e-6
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1
Query:  259 WVADSGATAHMTPSNELIFDYETC-SNLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            W+ DSGATAHMTP  E +FDY+   +++ VT+A+G+ + + G G + +   D   I       V H+PGLD  L S
Sbjct:  160 WLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLS 232          
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Match: A0A1Y1LRT7_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1LRT7_PHOPY)

HSP 1 Score: 56.2 bits (134), Expect = 3.150e-6
Identity = 48/158 (30.38%), Postives = 72/158 (45.57%), Query Frame = 1
Query:   13 CFQCNEPGHLKMNCPQRTCPICKGIGHGESSHRLSAMFSSDGFRDNVEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPSNELIFDYETCS-NLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVAHVPGLDTNLFS 483
            C++C++ GH    CP+      KG G+       SA  SS+  R     GF +R  G     + +   + +K    D   E W+ADSGA+AHMT       ++E  S    V + N E +   G G++ V     GE  +  L+ V  VP ++ NL S
Sbjct:  238 CYRCHQAGHFAKKCPK------KGSGN-------SAGNSSES-RGRRSSGFDSRADGD----AFVGAEKSNK----DANAELWLADSGASAHMTRHKSYFINFEPFSLPKTVQVGNSEKIFAYGQGQINVEMFVNGEWRRNHLNNVWLVPDIERNLLS 373          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58382.13442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
A0A1W7R602_AEDAL7.050e-1030.86Putative copia-2 aa-i (Fragment) n=1 Tax=Aedes alb... [more]
A0A8D8KT35_CULPI8.310e-830.82Copia protein n=6 Tax=Culex pipiens TaxID=7175 Rep... [more]
A0A6H5II87_9HYME8.790e-828.66Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
A0A6H5J355_9HYME5.540e-726.63Uncharacterized protein n=1 Tax=Trichogramma brass... [more]
POLX_TOBAC1.020e-629.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6LGS5_TENMO1.060e-627.95Anoctamin n=1 Tax=Tenebrio molitor TaxID=7067 RepI... [more]
A0A225UGS0_9STRA2.030e-630.50Integrase, catalytic core protein (Fragment) n=1 T... [more]
A0A329SN38_9STRA3.050e-640.79Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A3M6VPY8_9STRA3.100e-640.79CCHC-type domain-containing protein n=1 Tax=Perono... [more]
A0A1Y1LRT7_PHOPY3.150e-630.38Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58382contigH-paniculata_contig58382:307..789 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue7e-09
Seed eggNOG ortholog67593.Physo138220
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size483
Cds size483
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930635.1191297-CDS-H-paniculata_contig58382:306..7891622930635.1191297-CDS-H-paniculata_contig58382:306..789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58382 307..789 -
1691481382.7985177-CDS-H-paniculata_contig58382:306..7891691481382.7985177-CDS-H-paniculata_contig58382:306..789Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58382 307..789 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58382.13442.1prot_H-paniculata_contig58382.13442.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58382 307..789 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58382.13442.1

>prot_H-paniculata_contig58382.13442.1 ID=prot_H-paniculata_contig58382.13442.1|Name=mRNA_H-paniculata_contig58382.13442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=161bp
ETRVCFQCNEPGHLKMNCPQRTCPICKGIGHGESSHRLSAMFSSDGFRDN
VEHGFTARVAGQGEFASVIELIEEDKPVPVDGCEEFWVADSGATAHMTPS
NELIFDYETCSNLFVTMANGETLPIEGYGKMLVWTKDRGEIHKFSLSRVA
HVPGLDTNLFS
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mRNA from alignment at H-paniculata_contig58382:307..789-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58382.13442.1 ID=mRNA_H-paniculata_contig58382.13442.1|Name=mRNA_H-paniculata_contig58382.13442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=483bp|location=Sequence derived from alignment at H-paniculata_contig58382:307..789- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAA TTGTCCTCAGCGCACATGTCCGATTTGCAAAGGGATCGGTCATGGCGAGA GCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGGGACAAT GTTGAACACGGTTTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTC GGTAATTGAGCTTATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTG AGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCT AACGAATTAATTTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGAT GGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTAT GGACGAAGGATCGGGGCGAGATACATAAATTCAGCTTGAGTCGTGTAGCG CATGTTCCGGGCCTGGACACAAATTTGTTTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig58382:307..789-

>mRNA_H-paniculata_contig58382.13442.1 ID=mRNA_H-paniculata_contig58382.13442.1|Name=mRNA_H-paniculata_contig58382.13442.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=966bp|location=Sequence derived from alignment at H-paniculata_contig58382:307..789- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAACTCGTGTTTGTTTTCAATGTAATGAGCCAGGTCATCTGAAGATGAA
TTGTCCTCAGCGCACATGTCCGATTTGCAAAGGGATCGGTCATGGCGAGA
GCAGTCACAGGTTGTCAGCAATGTTCTCTTCGGACGGGTTCAGGGACAAT
GTTGAACACGGTTTCACGGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTC
GGTAATTGAGCTTATTGAAGAGGACAAGCCAGTACCAGTAGATGGTTGTG
AGGAGTTTTGGGTGGCCGACAGTGGGGCTACGGCCCACATGACTCCGTCT
AACGAATTAATTTTTGATTACGAAACCTGCAGTAATTTGTTTGTGACGAT
GGCTAACGGCGAAACACTTCCGATTGAGGGATATGGTAAGATGTTGGTAT
GGACGAAGGATCGGGGCGAGATACATAAATTCAGCTTGAGTCGTGTAGCG
CATGTTCCGGGCCTGGACACAAATTTGTTTTCCGAAACTCGTGTTTGTTT
TCAATGTAATGAGCCAGGTCATCTGAAGATGAATTGTCCTCAGCGCACAT
GTCCGATTTGCAAAGGGATCGGTCATGGCGAGAGCAGTCACAGGTTGTCA
GCAATGTTCTCTTCGGACGGGTTCAGGGACAATGTTGAACACGGTTTCAC
GGCCAGAGTGGCAGGGCAGGGCGAGTTTGCTTCGGTAATTGAGCTTATTG
AAGAGGACAAGCCAGTACCAGTAGATGGTTGTGAGGAGTTTTGGGTGGCC
GACAGTGGGGCTACGGCCCACATGACTCCGTCTAACGAATTAATTTTTGA
TTACGAAACCTGCAGTAATTTGTTTGTGACGATGGCTAACGGCGAAACAC
TTCCGATTGAGGGATATGGTAAGATGTTGGTATGGACGAAGGATCGGGGC
GAGATACATAAATTCAGCTTGAGTCGTGTAGCGCATGTTCCGGGCCTGGA
CACAAATTTGTTTTCC
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