mRNA_H-paniculata_contig58344.13439.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58344.13439.1
Unique NamemRNA_H-paniculata_contig58344.13439.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8F0F7A3_9PHAE (Uncharacterized protein n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0F7A3_9PHAE)

HSP 1 Score: 177 bits (448), Expect = 8.440e-56
Identity = 81/95 (85.26%), Postives = 86/95 (90.53%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
            IWG+ +IGLAVDK++NKDI  PLTTFFFWPRENGWELLK+ELSNKPWITKEDRI ILNGYT IINYWL NVQ  EGITKLVQDSS YNFELLANF
Sbjct:   17 IWGRSYIGLAVDKRLNKDIMIPLTTFFFWPRENGWELLKMELSNKPWITKEDRIEILNGYTLIINYWLSNVQEVEGITKLVQDSSIYNFELLANF 111          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8E5XRJ5_9PHAE (Uncharacterized protein n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A8E5XRJ5_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 3.260e-44
Identity = 63/94 (67.02%), Postives = 80/94 (85.11%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLAN 285
            IWGK ++GLAVD++I  ++T P+T+ FFWPRENGWELL+ ELS+KPW+TKE+RI ILNGYT+IINYWL NV+  EGITKL+QDS  Y F+L+ N
Sbjct:   17 IWGKNYLGLAVDRQIPNNLTSPITSLFFWPRENGWELLRAELSDKPWMTKEERIEILNGYTKIINYWLENVKEIEGITKLIQDSKKYKFKLVGN 110          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8F0FAW0_9PHAE (Uncharacterized protein n=3 Tax=Laminariales TaxID=2886 RepID=A0A8F0FAW0_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 3.360e-43
Identity = 64/95 (67.37%), Postives = 78/95 (82.11%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
            IW K ++GLAVDKK+  + T P+TTFFFWPRENGW+LLK ELS KPW++K+D I ILNGYT+IINYWL+NV   EGITKL++DSS   FEL+A F
Sbjct:   13 IWSKNYLGLAVDKKLPNNHTLPVTTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNGYTEIINYWLLNVNEIEGITKLIRDSSKLKFELVAKF 107          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A8F0FAU8_9PHAE (Uncharacterized protein n=1 Tax=Desmarestia aculeata TaxID=62298 RepID=A0A8F0FAU8_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 9.350e-43
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
            IW K ++GLAVDKK+  + T P+TTFFFWPRENGW+LLK ELS KPWI+K++ I ILNGY+ +INYWL NV   EGIT+L++DSS  NFELLA F
Sbjct:   12 IWSKNYLGLAVDKKLQNNHTVPITTFFFWPRENGWQLLKEELSYKPWISKDESIDILNGYSNLINYWLKNVNEIEGITRLIRDSSNLNFELLAKF 106          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A0R6M0Q9_UNDPI (Putative plastid-specific 30S ribosomal protein n=26 Tax=Laminariales TaxID=2886 RepID=A0A0R6M0Q9_UNDPI)

HSP 1 Score: 143 bits (361), Expect = 1.330e-42
Identity = 63/95 (66.32%), Postives = 76/95 (80.00%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
            IW K ++GLAVDKK+  + T P+TTFFFWPRENGW+LLK ELS KPW++K+D I ILN YT+IINYWLVNV   +GI KL++DSS   FELLA F
Sbjct:   12 IWSKNYLGLAVDKKLQNNRTLPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNAYTEIINYWLVNVNEVQGIAKLIKDSSKLKFELLAKF 106          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A0Y0KCK9_9PHAE (Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KCK9_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 3.220e-42
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLA 282
            IW K ++GLAVDKK+  + T PLTTFFFWPRENGW+LLK ELS KPWI+KED I ILNGY +IINYW+ NV   EGI KL+ DSS  NFELLA
Sbjct:   18 IWSKNYLGLAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYNEIINYWIENVNKMEGIKKLIVDSSELNFELLA 110          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: D1GJM8_FUCVE (Conserved hypothetical plastid protein n=3 Tax=Fucaceae TaxID=3010 RepID=D1GJM8_FUCVE)

HSP 1 Score: 141 bits (356), Expect = 7.910e-42
Identity = 65/95 (68.42%), Postives = 74/95 (77.89%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
            IW K ++GLAVDKK+  + T PLTTFFFWPRENGW+LLK ELS KPWI+KED I ILN Y +IINYWL NV   +GI KL+ DSS  NFELLA F
Sbjct:   13 IWSKNYLGLAVDKKLQNNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNSYNEIINYWLRNVNKMKGIKKLILDSSKLNFELLAKF 107          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A1L2F1K2_9PHAE (Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 RepID=A0A1L2F1K2_9PHAE)

HSP 1 Score: 140 bits (354), Expect = 1.860e-41
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLA 282
            IW K ++ LAVDKK+  + T PLTTFFFWPRENGW+LLK ELS KPWI+KED I ILNGY++IINYW+ NV   EGI KLV DSS  NFELLA
Sbjct:   18 IWSKNYLALAVDKKLQSNQTLPLTTFFFWPRENGWQLLKEELSCKPWISKEDSIDILNGYSEIINYWVKNVSKMEGIRKLVLDSSKLNFELLA 110          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: D1J701_ECTSI (Probable plastid-specific 30S ribosomal protein n=6 Tax=Ectocarpales TaxID=2877 RepID=D1J701_ECTSI)

HSP 1 Score: 140 bits (352), Expect = 3.120e-41
Identity = 61/95 (64.21%), Postives = 74/95 (77.89%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
            +W K ++GLAVDKK+  + T P+TTFFFWPRENGW+LLK ELS KPW++K+D I ILN YT IINYWL NV   EGITKL++DSS   +ELL  F
Sbjct:   12 LWSKNYLGLAVDKKLENNSTMPITTFFFWPRENGWQLLKEELSYKPWMSKDDSIDILNNYTTIINYWLSNVDEVEGITKLIRDSSKLKYELLGKF 106          
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Match: A0A1I9LVY6_9PHAE (Putative plastid-specific 30S ribosomal protein n=1 Tax=Pleurocladia lacustris TaxID=246121 RepID=A0A1I9LVY6_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 5.170e-40
Identity = 58/95 (61.05%), Postives = 74/95 (77.89%), Query Frame = 1
Query:    4 IWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWITKEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF 288
            +WGK ++GLAVDKK+  + T P+TTFFFWPRENGW+LLK ELS KPW++K++ I ILN YT +INYWL NV   EGI KL++DS+   +ELL  F
Sbjct:   12 LWGKSYLGLAVDKKLQNNYTIPITTFFFWPRENGWQLLKEELSYKPWMSKDESIDILNNYTILINYWLTNVDKVEGIKKLIRDSAKLKYELLGKF 106          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58344.13439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8F0F7A3_9PHAE8.440e-5685.26Uncharacterized protein n=1 Tax=Protohalopteris sp... [more]
A0A8E5XRJ5_9PHAE3.260e-4467.02Uncharacterized protein n=1 Tax=Ishige okamurae Ta... [more]
A0A8F0FAW0_9PHAE3.360e-4367.37Uncharacterized protein n=3 Tax=Laminariales TaxID... [more]
A0A8F0FAU8_9PHAE9.350e-4366.32Uncharacterized protein n=1 Tax=Desmarestia aculea... [more]
A0A0R6M0Q9_UNDPI1.330e-4266.32Putative plastid-specific 30S ribosomal protein n=... [more]
A0A0Y0KCK9_9PHAE3.220e-4269.89Ycf65 n=12 Tax=Sargassum TaxID=3015 RepID=A0A0Y0KC... [more]
D1GJM8_FUCVE7.910e-4268.42Conserved hypothetical plastid protein n=3 Tax=Fuc... [more]
A0A1L2F1K2_9PHAE1.860e-4169.89Ycf65 n=1 Tax=Coccophora langsdorfii TaxID=74099 R... [more]
D1J701_ECTSI3.120e-4164.21Probable plastid-specific 30S ribosomal protein n=... [more]
A0A1I9LVY6_9PHAE5.170e-4061.05Putative plastid-specific 30S ribosomal protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58344contigH-paniculata_contig58344:55..345 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue6e-32
Seed eggNOG ortholog2880.D1J701
Preferred nameycf65
KEGG koko:K19032
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Plastid and cyanobacterial ribosomal protein (PSRP-3 / Ycf65)
EggNOG OGs2C5W0@1,2SDQ9@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko03011
Exons1
Model size291
Cds size291
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930634.6582701-CDS-H-paniculata_contig58344:54..3451622930634.6582701-CDS-H-paniculata_contig58344:54..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58344 55..345 +
1691481382.5803683-CDS-H-paniculata_contig58344:54..3451691481382.5803683-CDS-H-paniculata_contig58344:54..345Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58344 55..345 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58344.13439.1prot_H-paniculata_contig58344.13439.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58344 55..345 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58344.13439.1

>prot_H-paniculata_contig58344.13439.1 ID=prot_H-paniculata_contig58344.13439.1|Name=mRNA_H-paniculata_contig58344.13439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=97bp
FIWGKGHIGLAVDKKINKDITFPLTTFFFWPRENGWELLKIELSNKPWIT
KEDRIAILNGYTQIINYWLVNVQNTEGITKLVQDSSTYNFELLANF*
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mRNA from alignment at H-paniculata_contig58344:55..345+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58344.13439.1 ID=mRNA_H-paniculata_contig58344.13439.1|Name=mRNA_H-paniculata_contig58344.13439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at H-paniculata_contig58344:55..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTATTTGGGGAAAAGGTCATATTGGTTTAGCAGTAGATAAGAAAATCAA TAAAGATATAACATTTCCATTAACTACATTCTTCTTTTGGCCCAGAGAAA ATGGTTGGGAATTATTAAAAATCGAATTATCAAATAAACCTTGGATAACA AAAGAAGATAGAATCGCAATATTAAATGGTTATACTCAAATAATTAATTA TTGGTTAGTCAATGTACAAAATACTGAAGGAATTACAAAATTAGTTCAAG ATAGTTCAACATATAATTTTGAGCTTCTAGCGAATTTTTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig58344:55..345+

>mRNA_H-paniculata_contig58344.13439.1 ID=mRNA_H-paniculata_contig58344.13439.1|Name=mRNA_H-paniculata_contig58344.13439.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at H-paniculata_contig58344:55..345+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTATTTGGGGAAAAGGTCATATTGGTTTAGCAGTAGATAAGAAAATCAA
TAAAGATATAACATTTCCATTAACTACATTCTTCTTTTGGCCCAGAGAAA
ATGGTTGGGAATTATTAAAAATCGAATTATCAAATAAACCTTGGATAACA
AAAGAAGATAGAATCGCAATATTAAATGGTTATACTCAAATAATTAATTA
TTGGTTAGTCAATGTACAAAATACTGAAGGAATTACAAAATTAGTTCAAG
ATAGTTCAACATATAATTTTGAGCTTCTAGCGAATTTTTAATTTATTTGG
GGAAAAGGTCATATTGGTTTAGCAGTAGATAAGAAAATCAATAAAGATAT
AACATTTCCATTAACTACATTCTTCTTTTGGCCCAGAGAAAATGGTTGGG
AATTATTAAAAATCGAATTATCAAATAAACCTTGGATAACAAAAGAAGAT
AGAATCGCAATATTAAATGGTTATACTCAAATAATTAATTATTGGTTAGT
CAATGTACAAAATACTGAAGGAATTACAAAATTAGTTCAAGATAGTTCAA
CATATAATTTTGAGCTTCTAGCGAATTTTTAA
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