mRNA_H-paniculata_contig5831.13434.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5831.13434.1
Unique NamemRNA_H-paniculata_contig5831.13434.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5831.13434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5831contigH-paniculata_contig5831:6652..7290 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size639
Cds size459
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5831.13434.1prot_H-paniculata_contig5831.13434.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5831 6779..7237 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930634.219792-UTR-H-paniculata_contig5831:6651..67781622930634.219792-UTR-H-paniculata_contig5831:6651..6778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5831 6652..6778 +
1691481382.3812385-UTR-H-paniculata_contig5831:6651..67781691481382.3812385-UTR-H-paniculata_contig5831:6651..6778Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5831 6652..6778 +
1622930634.2566214-UTR-H-paniculata_contig5831:7237..72901622930634.2566214-UTR-H-paniculata_contig5831:7237..7290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5831 7238..7290 +
1691481382.400061-UTR-H-paniculata_contig5831:7237..72901691481382.400061-UTR-H-paniculata_contig5831:7237..7290Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5831 7238..7290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930634.236477-CDS-H-paniculata_contig5831:6778..72371622930634.236477-CDS-H-paniculata_contig5831:6778..7237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5831 6779..7237 +
1691481382.3911238-CDS-H-paniculata_contig5831:6778..72371691481382.3911238-CDS-H-paniculata_contig5831:6778..7237Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5831 6779..7237 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5831.13434.1

>prot_H-paniculata_contig5831.13434.1 ID=prot_H-paniculata_contig5831.13434.1|Name=mRNA_H-paniculata_contig5831.13434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=153bp
MGVSASGVCAVSDSGGGGGAPGGGISSGSAASGGVTAAFASGGTVLADDD
GGDGDDDDGDDDGQYPTGHGPAGGTDSDARRLPTIITDDGEESTETEETA
AATAATTAAAMVMAAASGGNFGSRRLSAASVGAIARACSTYLSGNEADTE
EI*
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mRNA from alignment at H-paniculata_contig5831:6652..7290+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5831.13434.1 ID=mRNA_H-paniculata_contig5831.13434.1|Name=mRNA_H-paniculata_contig5831.13434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=639bp|location=Sequence derived from alignment at H-paniculata_contig5831:6652..7290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGGGCGGTGGCGGCAGCGGCGGCGGTGTGTCGGCAGAGAAAAAGCGAC
ACAGCACAGCTATTAGCGTGTTTGGGAAGACTAGCGGTGGCAGCGGCGGC
AGCAGCGGCAGCAACGGTGCTGGTATCATGGGCGTGTCGGCGAGTGGCGT
TTGTGCGGTGAGCGACAGTGGTGGTGGCGGCGGGGCACCCGGCGGAGGGA
TTAGTTCCGGTTCGGCTGCTTCAGGCGGTGTAACCGCCGCGTTTGCTTCT
GGTGGCACTGTTCTTGCAGATGATGATGGTGGTGATGGTGATGATGATGA
TGGTGATGATGACGGACAGTACCCAACAGGACACGGTCCTGCTGGTGGTA
CTGACAGTGATGCGCGGCGTTTGCCCACGATAATCACGGACGACGGAGAG
GAAAGCACAGAGACCGAAGAGACTGCGGCGGCGACGGCAGCGACGACGGC
GGCGGCGATGGTGATGGCGGCGGCTTCTGGGGGGAATTTCGGAAGTCGCC
GTTTATCCGCGGCCAGCGTTGGTGCGATCGCTCGCGCTTGTTCTACGTAC
CTCAGTGGAAACGAGGCCGATACAGAAGAAATTTAGTTGCACAAAGGCAA
CGCGCATGCGTACGGGGGGTGCTAAAGCCTATATCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5831:6652..7290+

>mRNA_H-paniculata_contig5831.13434.1 ID=mRNA_H-paniculata_contig5831.13434.1|Name=mRNA_H-paniculata_contig5831.13434.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=918bp|location=Sequence derived from alignment at H-paniculata_contig5831:6652..7290+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCGTGTCGGCGAGTGGCGTTTGTGCGGTGAGCGACAGTGGTGGTGG
CGGCGGGGCACCCGGCGGAGGGATTAGTTCCGGTTCGGCTGCTTCAGGCG
GTGTAACCGCCGCGTTTGCTTCTGGTGGCACTGTTCTTGCAGATGATGAT
GGTGGTGATGGTGATGATGATGATGGTGATGATGACGGACAGTACCCAAC
AGGACACGGTCCTGCTGGTGGTACTGACAGTGATGCGCGGCGTTTGCCCA
CGATAATCACGGACGACGGAGAGGAAAGCACAGAGACCGAAGAGACTGCG
GCGGCGACGGCAGCGACGACGGCGGCGGCGATGGTGATGGCGGCGGCTTC
TGGGGGGAATTTCGGAAGTCGCCGTTTATCCGCGGCCAGCGTTGGTGCGA
TCGCTCGCGCTTGTTCTACGTACCTCAGTGGAAACGAGGCCGATACAGAA
GAAATTTAGATGGGCGTGTCGGCGAGTGGCGTTTGTGCGGTGAGCGACAG
TGGTGGTGGCGGCGGGGCACCCGGCGGAGGGATTAGTTCCGGTTCGGCTG
CTTCAGGCGGTGTAACCGCCGCGTTTGCTTCTGGTGGCACTGTTCTTGCA
GATGATGATGGTGGTGATGGTGATGATGATGATGGTGATGATGACGGACA
GTACCCAACAGGACACGGTCCTGCTGGTGGTACTGACAGTGATGCGCGGC
GTTTGCCCACGATAATCACGGACGACGGAGAGGAAAGCACAGAGACCGAA
GAGACTGCGGCGGCGACGGCAGCGACGACGGCGGCGGCGATGGTGATGGC
GGCGGCTTCTGGGGGGAATTTCGGAAGTCGCCGTTTATCCGCGGCCAGCG
TTGGTGCGATCGCTCGCGCTTGTTCTACGTACCTCAGTGGAAACGAGGCC
GATACAGAAGAAATTTAG
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