mRNA_H-paniculata_contig5828.13432.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5828.13432.1
Unique NamemRNA_H-paniculata_contig5828.13432.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: A0A6H5JBZ5_9PHAE (DOMON domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ5_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 4.930e-20
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   16 LEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            L +  V ++ GWTS+TFLR     DD+DY++ +DI+D   T VIYAYREG GIGQHPN NRGAA+VN ATG
Sbjct:  274 LNITDVSMEDGWTSITFLRDRGAFDDEDYDLGSDIDDAVDTLVIYAYREGEGIGQHPNGNRGAATVNFATG 344
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: D7FX04_ECTSI (Dopamine beta-monooxygenase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX04_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.800e-19
Identity = 43/71 (60.56%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:   16 LEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            LEV SV V+  WT+V FLR  + LDDQDY++  D+++   TEVIY++REGAG+GQHPN NRGA++VN ATG
Sbjct:  147 LEVLSVEVEGDWTTVQFLRSFATLDDQDYDLSQDLDNEEDTEVIYSFREGAGVGQHPNANRGASTVNFATG 217
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: D7FQW8_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQW8_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 8.530e-19
Identity = 43/71 (60.56%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:   16 LEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            L    + ++ GWTSVTFLR     DDQDY++ +DI++ A T +IYAYREG GIGQHPN NRGAA+VN ATG
Sbjct:  541 LNFTDLSMEDGWTSVTFLRDRGAFDDQDYDLGSDIDNAADTLMIYAYREGEGIGQHPNGNRGAATVNFATG 611
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: A0A6H5JBL8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBL8_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 5.570e-18
Identity = 43/74 (58.11%), Postives = 57/74 (77.03%), Query Frame = 1 
Query:   16 LEVESVVVDRGWTSVTFLRFTSELDDQDYNV---LTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            LEV SV V+  WT+V FLR  + LDDQDY++   + D+++   TEVIY++REGAG+GQHPN NRGA++VN ATG
Sbjct:  781 LEVLSVEVEGEWTTVQFLRSFTTLDDQDYDLSQAIEDLDNEEDTEVIYSFREGAGVGQHPNANRGASTVNFATG 854
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: D7G7J2_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J2_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.630e-17
Identity = 39/73 (53.42%), Postives = 54/73 (73.97%), Query Frame = 1 
Query:   10 SVLEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            S L+V +V  D+ WT+VTF R  + LD +DY++  DIE+   T VIYA+++G G+GQHPNTNRGAA++N  TG
Sbjct:  571 SGLQVTNVTTDKTWTTVTFSRERATLDAEDYDLFEDIENEEDTLVIYAFKKGEGVGQHPNTNRGAATINFVTG 643
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: D8LFE6_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE6_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 2.640e-17
Identity = 41/74 (55.41%), Postives = 58/74 (78.38%), Query Frame = 1 
Query:    7 NSVLEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            ++VLEV+SV VD  WT+VTFL+ T+ LDDQDY++  DI+D   TEVIY++  G  +GQHP ++RGA+++N ATG
Sbjct:  663 DAVLEVQSVEVDGEWTTVTFLKPTAALDDQDYDLAQDIKDEEETEVIYSF--GESLGQHPTSSRGASTINFATG 734
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: A0A6H5JQ31_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ31_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.250e-16
Identity = 39/76 (51.32%), Postives = 54/76 (71.05%), Query Frame = 1 
Query:    1 SSNSVLEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            S  S LE  +V+ +  WT+VTF R  + LD +DY++  DIE+   T VIYA+++G G+GQHPNTNRGAA++N  TG
Sbjct:  552 SLGSELEGTTVISEGRWTTVTFFRERATLDAEDYDLFEDIENEVDTLVIYAFKKGEGVGQHPNTNRGAATINFVTG 627
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: D7G7J1_ECTSI (Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7J1_ECTSI)

HSP 1 Score: 82.4 bits (202), Expect = 1.250e-16
Identity = 38/71 (53.52%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   16 LEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            LEV +V    GWT+V F R  + LD +DY++  DIE+ A T VIY++++G G+GQHPNTNRGAA++N  TG
Sbjct:  572 LEVTNVTTGGGWTTVKFSRERATLDAEDYDLFEDIENEADTLVIYSFKKGEGVGQHPNTNRGAATINFVTG 642
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BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: A0A6H5JWZ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWZ0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 2.420e-14
Identity = 38/74 (51.35%), Postives = 53/74 (71.62%), Query Frame = 1 
Query:    7 NSVLEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            ++VLEV SV V+  WT+VT L+ T+ LDDQDY++  DIE+   TE IY+   G  +GQHP ++RGA ++N ATG
Sbjct:  202 DAVLEVPSVEVESEWTTVTLLKPTAALDDQDYDLAQDIENEEKTEAIYS--SGESLGQHPTSSRGANTINFATG 273
[Close]
BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Match: D8LRN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN2_ECTSI)

HSP 1 Score: 69.7 bits (169), Expect = 6.650e-13
Identity = 35/74 (47.30%), Postives = 44/74 (59.46%), Query Frame = 1 
Query:    7 NSVLEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIYAYREGAGIGQHPNTNRGAASVNMATG 228
            N+ LEV  + VD  WT VTF       DD DY +  DI     T +IYA+R G GIG+HPN+ RGAA +N+  G
Sbjct:   89 NNELEVVRMSVDGQWTGVTFALSGEGTDDSDYPLSDDIYPSQDTSIIYAWRSGDGIGKHPNSQRGAAQINLKDG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5828.13432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5JBZ5_9PHAE4.930e-2060.56DOMON domain-containing protein n=1 Tax=Ectocarpus... [more]
D7FX04_ECTSI1.800e-1960.56Dopamine beta-monooxygenase, putative n=1 Tax=Ecto... [more]
D7FQW8_ECTSI8.530e-1960.56Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JBL8_9PHAE5.570e-1858.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J2_ECTSI2.630e-1753.42Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
D8LFE6_ECTSI2.640e-1755.41Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JQ31_9PHAE1.250e-1651.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7J1_ECTSI1.250e-1653.52Peroxidase n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5JWZ0_9PHAE2.420e-1451.35Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRN2_ECTSI6.650e-1347.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5828contigH-paniculata_contig5828:1576..3319 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue2.8e-16
Seed eggNOG ortholog2880.D7FX04
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DOMON domain
EggNOG OGs2D0T2@1,2SFBV@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size232
Cds size228
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.679249-CDS-H-paniculata_contig5828:1575..16711622930633.679249-CDS-H-paniculata_contig5828:1575..1671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5828 1576..1671 +
1691481382.077177-CDS-H-paniculata_contig5828:1575..16711691481382.077177-CDS-H-paniculata_contig5828:1575..1671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5828 1576..1671 +
1622930633.6934044-CDS-H-paniculata_contig5828:3185..33171622930633.6934044-CDS-H-paniculata_contig5828:3185..3317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5828 3186..3317 +
1691481382.0900695-CDS-H-paniculata_contig5828:3185..33171691481382.0900695-CDS-H-paniculata_contig5828:3185..3317Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5828 3186..3317 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5828.13432.1prot_H-paniculata_contig5828.13432.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5828 1576..3317 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5828.13432.1

>prot_H-paniculata_contig5828.13432.1 ID=prot_H-paniculata_contig5828.13432.1|Name=mRNA_H-paniculata_contig5828.13432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=76bp
SSNSVLEVESVVVDRGWTSVTFLRFTSELDDQDYNVLTDIEDGALTEVIY
AYREGAGIGQHPNTNRGAASVNMATG
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mRNA from alignment at H-paniculata_contig5828:1576..3319+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5828.13432.1 ID=mRNA_H-paniculata_contig5828.13432.1|Name=mRNA_H-paniculata_contig5828.13432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1744bp|location=Sequence derived from alignment at H-paniculata_contig5828:1576..3319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTCCAATTCTGTTTTGGAAGTGGAAAGTGTAGTCGTCGACCGAGGTTG
GACTTCTGTCACCTTCTTACGTTTCACGTCGGAACTAGACGATCAGGTAT
GTGTTTCGGGGGGGGAAGGTCAGGGGGCGGGCTCTTATCAGTCCCAAGCG
TACGGTGTATAATCGTCACGACCTCGAAATGACCCAGGTGACACAGATAC
GAACCCGCACCGACCTGTGGACTCGTTTTCGGTTTTTAGATGTGTCTCAA
TCGGTGATCATTTTCGTTCAACATACTGGGGCTTTTTAGTCTGGCAATGG
GCAGATACATTCATCAGCAAATGTGGGAAAACGTAGGGGGAGCAAGTGTA
AGACCTACTCCGGCGTATCACACAGTCATCATTCCTACATTGCTGGTATT
CACCGGCCCAGGCTGCATGTTTTAAGGAGGATACCAGCCGCTGCTGTACT
CATTGACCACCCTTACGTTGCTATGTAACGTGGACTAGATTCCTCAGCGG
TTTGTTGGGCGTCTCGCGTGACCAAACGTCACGTATTCGGCAGGCGTGAC
TCTACCCCAAATTCCGCAAGGGACTTTCGGTTAGGGCGGCGGAAGGGGGG
GAGGGGGGCTAAAGTATGAGACAAAACTAGGAAAGCAACGCCTGCATCCA
CGCTGTCCGTGTGTCTTCCTTACAAACTCTCGATGCTCTTGAGAAGAAAC
TACAGTCGCTGCGATATTCCAGTAGATTCGCTTTCGCAAGCCAGTAGAGT
ACAGCACAAAACAGTACTCCGAAACGACGATTAACTCTCGTACTCGGAGT
TGTGTGTGAGAGAAAAGGGGGTCTTTTCTCCACTTCACGCTATCGGTTCT
CCATATCCCCAAAACACACGTCACACCTCACGTTGTGAAGTTCGTATTTA
TGCCGCGTATTATCGAGGTGTTGTGCGGGTAAGCGCCTCCAGACATCACC
CGATATCGTCGAATAATGAATTTAATTTTGATGTTTAGAGTGAGGTCTAG
TTATCACGATATGCCCACCAGTGTGGATTTTCACTTGGGTCTGGTTTCAT
GAGGCTTGTTTTTGGATTGGTTGAGAAATTCACATACTGCGGAATATTTG
ATTAGCAAAAAGAATAGCAATTTTCTACTGCAATGCGTAGCTATAGTTTG
CTATCCGCTGGACAGTACACGGCTTGTATACCTTTTTCCCCCCTGTCTAT
TCCTGTTTTTATTGCTGTTATTGCCATAATAGTTTTTTTCTTTTTCTTCA
CTTTGAACTCTACAATACCTTCTGTTCTATTTTTCCTGCTCTGAATTAAT
CGCAGATATCGCAGATACCGCAGATACTTAATTTCGATTTATTGAGCCAA
TATTCTCTTTTGTATGGCACTGTTCTTTTTATTCTTCGCTTGTTGTCACA
ACGATGGTTGCCCTTGACCGTTTCGTGCAGCCTTCGTCTTCCTCGTTATC
ATGAATTTCTCCATACTGTTGCGTTTCCTTCGAAAAGCCGGATAAGGTAT
GTACCACGGAGCTCGTTCTTCCTTCTTTTTTGTTAAGCACGATGAGCACC
GTCTATGAACCATGGCTACTGTTTTTCCTAATTGACGCTTTCGTTTTGGT
GAAATTGCAGGACTATAACGTACTGACAGATATCGAAGACGGAGCACTCA
CGGAGGTCATCTACGCCTATCGCGAGGGGGCAGGGATAGGGCAGCACCCA
AACACCAACAGAGGAGCAGCATCAGTTAACATGGCCACGGGTGC
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Coding sequence (CDS) from alignment at H-paniculata_contig5828:1576..3319+

>mRNA_H-paniculata_contig5828.13432.1 ID=mRNA_H-paniculata_contig5828.13432.1|Name=mRNA_H-paniculata_contig5828.13432.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at H-paniculata_contig5828:1576..3319+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCTTCCAATTCTGTTTTGGAAGTGGAAAGTGTAGTCGTCGACCGAGGTTG
GACTTCTGTCACCTTCTTACGTTTCACGTCGGAACTAGACGATCAGTCTT
CCAATTCTGTTTTGGAAGTGGAAAGTGTAGTCGTCGACCGAGGTTGGACT
TCTGTCACCTTCTTACGTTTCACGTCGGAACTAGACGATCAGGACTATAA
CGTACTGACAGATATCGAAGACGGAGCACTCACGGAGGTCATCTACGCCT
ATCGCGAGGGGGCAGGGATAGGGCAGCACCCAAACACCAACAGAGGAGCA
GCATCAGTTAACATGGCCACGGGTGACTATAACGTACTGACAGATATCGA
AGACGGAGCACTCACGGAGGTCATCTACGCCTATCGCGAGGGGGCAGGGA
TAGGGCAGCACCCAAACACCAACAGAGGAGCAGCATCAGTTAACATGGCC
ACGGGT
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