mRNA_H-paniculata_contig58239.13430.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58239.13430.1
Unique NamemRNA_H-paniculata_contig58239.13430.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58239.13430.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58239contigH-paniculata_contig58239:81..283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size167
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.394915-CDS-H-paniculata_contig58239:80..1321622930633.394915-CDS-H-paniculata_contig58239:80..132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58239 81..132 +
1691481381.9226022-CDS-H-paniculata_contig58239:80..1321691481381.9226022-CDS-H-paniculata_contig58239:80..132Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58239 81..132 +
1622930633.4117198-CDS-H-paniculata_contig58239:168..2811622930633.4117198-CDS-H-paniculata_contig58239:168..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58239 169..281 +
1691481381.9374363-CDS-H-paniculata_contig58239:168..2811691481381.9374363-CDS-H-paniculata_contig58239:168..281Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58239 169..281 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58239.13430.1prot_H-paniculata_contig58239.13430.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58239 81..281 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58239.13430.1

>prot_H-paniculata_contig58239.13430.1 ID=prot_H-paniculata_contig58239.13430.1|Name=mRNA_H-paniculata_contig58239.13430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=55bp
PHNAKQLSSHWRRSGNLLQTRAAAAHAAAVGPTHQSKQQIRSFPGHPSGT
QSPGY
back to top

mRNA from alignment at H-paniculata_contig58239:81..283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58239.13430.1 ID=mRNA_H-paniculata_contig58239.13430.1|Name=mRNA_H-paniculata_contig58239.13430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=203bp|location=Sequence derived from alignment at H-paniculata_contig58239:81..283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCATAACGCAAAGCAGTTATCATCACACTGGCGTCGCAGCGGTAACCT
GTTACAGACAATGTCGTCCAACGCTTCCACGATCGGGGTACAGACTCGGG
CGGCAGCCGCTCACGCGGCCGCGGTAGGCCCGACGCATCAGTCCAAGCAA
CAGATTCGGTCCTTCCCAGGACACCCTTCCGGGACGCAGTCTCCGGGGTA
CCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig58239:81..283+

>mRNA_H-paniculata_contig58239.13430.1 ID=mRNA_H-paniculata_contig58239.13430.1|Name=mRNA_H-paniculata_contig58239.13430.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at H-paniculata_contig58239:81..283+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCGCATAACGCAAAGCAGTTATCATCACACTGGCGTCGCAGCGGTAACCT
GTCCGCATAACGCAAAGCAGTTATCATCACACTGGCGTCGCAGCGGTAAC
CTGTTACAGACTCGGGCGGCAGCCGCTCACGCGGCCGCGGTAGGCCCGAC
GCATCAGTCCAAGCAACAGATTCGGTCCTTCCCAGGACACCCTTCCGGGA
CGCAGTCTCCGGGGTACTACAGACTCGGGCGGCAGCCGCTCACGCGGCCG
CGGTAGGCCCGACGCATCAGTCCAAGCAACAGATTCGGTCCTTCCCAGGA
CACCCTTCCGGGACGCAGTCTCCGGGGTAC
back to top