mRNA_H-paniculata_contig5823.13429.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5823.13429.1
Unique NamemRNA_H-paniculata_contig5823.13429.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5823.13429.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5823contigH-paniculata_contig5823:3286..4119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size835
Cds size471
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.3451118-UTR-H-paniculata_contig5823:3285..36481622930633.3451118-UTR-H-paniculata_contig5823:3285..3648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5823 3286..3648 +
1691481381.8974543-UTR-H-paniculata_contig5823:3285..36481691481381.8974543-UTR-H-paniculata_contig5823:3285..3648Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5823 3286..3648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.3564188-CDS-H-paniculata_contig5823:3648..41191622930633.3564188-CDS-H-paniculata_contig5823:3648..4119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5823 3649..4119 +
1691481381.9083092-CDS-H-paniculata_contig5823:3648..41191691481381.9083092-CDS-H-paniculata_contig5823:3648..4119Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5823 3649..4119 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5823.13429.1prot_H-paniculata_contig5823.13429.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5823 3649..4119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5823.13429.1

>prot_H-paniculata_contig5823.13429.1 ID=prot_H-paniculata_contig5823.13429.1|Name=mRNA_H-paniculata_contig5823.13429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
MKEAVERGECETIITEGLLIGEAEMAAAVQAPPAAQEPAGVVETAADEAA
AMKAVKVTKTTKTATAPVAAPATLEAEDQEDLPAALLVGPGISLASGRGM
EEKYRIRKTPKAATVEGVAKGAVAQVTPTASGTKKRLESTWTQRGGPPAT
QTPKDGD
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mRNA from alignment at H-paniculata_contig5823:3286..4119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5823.13429.1 ID=mRNA_H-paniculata_contig5823.13429.1|Name=mRNA_H-paniculata_contig5823.13429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=834bp|location=Sequence derived from alignment at H-paniculata_contig5823:3286..4119+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTTAGCGTCAGCACAGGAATTGGTAGCTCTCACAGCGGAAGCGCGGGT
GGAGATGAAGGAGCCGTCGCAAGTGAGTGCGGACGCATCACTGGTAACGG
GGAGTCCGTCGGACTGGGAGAGAGGGAGCACGGGGGTACGAGAGCGCGTG
CTACCTGAGAGGAAGAAAATAGCAACGGTAACGTCCGCGAAGGCGATAGA
CACCACGGCGGAGAAGGTGGTCAAAGAGAAGGTGGCGAAGGCAGCGAGCA
GGGCAACGGCGCCAGCGGCGACGGAGGCAGCGAAGTCCCCGTCAACCCTG
GGACCGGAGAGACACGGGGAGATGACGGTGGCATCGCCATTGGGAGCGGA
CGCCGTGGTGTAAATGAAGGAGGCGGTGGAGCGTGGGGAGTGCGAAACGA
TAATAACGGAGGGACTGCTGATTGGAGAGGCGGAGATGGCAGCGGCGGTG
CAGGCACCTCCGGCGGCGCAGGAGCCGGCGGGGGTCGTGGAAACAGCAGC
GGATGAGGCGGCCGCGATGAAAGCGGTGAAAGTAACGAAAACAACGAAGA
CGGCAACGGCGCCGGTGGCGGCGCCGGCGACCTTGGAGGCAGAGGATCAG
GAAGACCTACCAGCCGCGCTGCTGGTGGGACCGGGCATATCGTTGGCGTC
TGGGAGAGGGATGGAAGAGAAGTACCGAATACGGAAGACACCGAAAGCGG
CGACGGTAGAGGGGGTCGCGAAGGGAGCGGTGGCGCAGGTGACGCCGACG
GCTTCAGGAACGAAGAAGAGACTGGAGTCAACGTGGACGCAGCGGGGCGG
ACCGCCCGCAACGCAGACGCCAAAGGACGGGGAC
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Coding sequence (CDS) from alignment at H-paniculata_contig5823:3286..4119+

>mRNA_H-paniculata_contig5823.13429.1 ID=mRNA_H-paniculata_contig5823.13429.1|Name=mRNA_H-paniculata_contig5823.13429.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig5823:3286..4119+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGGAGGCGGTGGAGCGTGGGGAGTGCGAAACGATAATAACGGAGGG
ACTGCTGATTGGAGAGGCGGAGATGGCAGCGGCGGTGCAGGCACCTCCGG
CGGCGCAGGAGCCGGCGGGGGTCGTGGAAACAGCAGCGGATGAGGCGGCC
GCGATGAAAGCGGTGAAAGTAACGAAAACAACGAAGACGGCAACGGCGCC
GGTGGCGGCGCCGGCGACCTTGGAGGCAGAGGATCAGGAAGACCTACCAG
CCGCGCTGCTGGTGGGACCGGGCATATCGTTGGCGTCTGGGAGAGGGATG
GAAGAGAAGTACCGAATACGGAAGACACCGAAAGCGGCGACGGTAGAGGG
GGTCGCGAAGGGAGCGGTGGCGCAGGTGACGCCGACGGCTTCAGGAACGA
AGAAGAGACTGGAGTCAACGTGGACGCAGCGGGGCGGACCGCCCGCAACG
CAGACGCCAAAGGACGGGGACATGAAGGAGGCGGTGGAGCGTGGGGAGTG
CGAAACGATAATAACGGAGGGACTGCTGATTGGAGAGGCGGAGATGGCAG
CGGCGGTGCAGGCACCTCCGGCGGCGCAGGAGCCGGCGGGGGTCGTGGAA
ACAGCAGCGGATGAGGCGGCCGCGATGAAAGCGGTGAAAGTAACGAAAAC
AACGAAGACGGCAACGGCGCCGGTGGCGGCGCCGGCGACCTTGGAGGCAG
AGGATCAGGAAGACCTACCAGCCGCGCTGCTGGTGGGACCGGGCATATCG
TTGGCGTCTGGGAGAGGGATGGAAGAGAAGTACCGAATACGGAAGACACC
GAAAGCGGCGACGGTAGAGGGGGTCGCGAAGGGAGCGGTGGCGCAGGTGA
CGCCGACGGCTTCAGGAACGAAGAAGAGACTGGAGTCAACGTGGACGCAG
CGGGGCGGACCGCCCGCAACGCAGACGCCAAAGGACGGGGAC
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