mRNA_H-paniculata_contig58211.13427.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58211.13427.1
Unique NamemRNA_H-paniculata_contig58211.13427.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58211.13427.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58211contigH-paniculata_contig58211:391..880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size492
Cds size384
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.2254603-CDS-H-paniculata_contig58211:390..7741622930633.2254603-CDS-H-paniculata_contig58211:390..774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58211 391..774 +
1691481381.8554127-CDS-H-paniculata_contig58211:390..7741691481381.8554127-CDS-H-paniculata_contig58211:390..774Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58211 391..774 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.2418172-UTR-H-paniculata_contig58211:774..8801622930633.2418172-UTR-H-paniculata_contig58211:774..880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58211 775..880 +
1691481381.8653266-UTR-H-paniculata_contig58211:774..8801691481381.8653266-UTR-H-paniculata_contig58211:774..880Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig58211 775..880 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58211.13427.1prot_H-paniculata_contig58211.13427.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58211 391..774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58211.13427.1

>prot_H-paniculata_contig58211.13427.1 ID=prot_H-paniculata_contig58211.13427.1|Name=mRNA_H-paniculata_contig58211.13427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=128bp
CLLQKRPLFLRCTSTSPSQPRTKGSQTKHKSLLAQNITTSHVISLPAPSS
CEPPITSRISPRYAQVPPPFGSCPRDRRLHPTNASTCRSDRNSQRQGGVR
CARFLFTFETHLGSCSEQRLRNARMDV*
back to top

mRNA from alignment at H-paniculata_contig58211:391..880+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58211.13427.1 ID=mRNA_H-paniculata_contig58211.13427.1|Name=mRNA_H-paniculata_contig58211.13427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=490bp|location=Sequence derived from alignment at H-paniculata_contig58211:391..880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCTGTTGCAAAAGCGTCCTCTCTTCTTAAGATGTACCTCGACTTCGCC
ATCACAACCGAGAACCAAAGGTTCACAAACCAAGCACAAAAGCCTCTTGG
CACAAAACATCACGACATCACACGTCATCTCGCTCCCAGCTCCATCATCT
TGCGAACCCCCGATAACGAGCCGAATTTCTCCACGATATGCGCAAGTACC
ACCCCCATTCGGGTCCTGCCCGAGAGATCGTCGCCTGCACCCTACAAACG
CTTCAACATGCCGCAGTGACCGTAACAGTCAGCGGCAAGGAGGGGTGAGG
TGTGCACGTTTCCTCTTCACATTTGAAACTCACCTCGGCTCCTGCTCTGA
GCAGCGCCTTCGCAACGCTAGGATGGATGTCTAGCAGAACAGGCGAAAAA
GAGAGGACTTTGGCAATATTAATCGAGCGCATCAAATTTGGAAGGATGGT
CATGAAGCCAGCTCCTCACGACACGGACATTACCTTCGAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig58211:391..880+

>mRNA_H-paniculata_contig58211.13427.1 ID=mRNA_H-paniculata_contig58211.13427.1|Name=mRNA_H-paniculata_contig58211.13427.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at H-paniculata_contig58211:391..880+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGTCTGTTGCAAAAGCGTCCTCTCTTCTTAAGATGTACCTCGACTTCGCC
ATCACAACCGAGAACCAAAGGTTCACAAACCAAGCACAAAAGCCTCTTGG
CACAAAACATCACGACATCACACGTCATCTCGCTCCCAGCTCCATCATCT
TGCGAACCCCCGATAACGAGCCGAATTTCTCCACGATATGCGCAAGTACC
ACCCCCATTCGGGTCCTGCCCGAGAGATCGTCGCCTGCACCCTACAAACG
CTTCAACATGCCGCAGTGACCGTAACAGTCAGCGGCAAGGAGGGGTGAGG
TGTGCACGTTTCCTCTTCACATTTGAAACTCACCTCGGCTCCTGCTCTGA
GCAGCGCCTTCGCAACGCTAGGATGGATGTCTAGTGTCTGTTGCAAAAGC
GTCCTCTCTTCTTAAGATGTACCTCGACTTCGCCATCACAACCGAGAACC
AAAGGTTCACAAACCAAGCACAAAAGCCTCTTGGCACAAAACATCACGAC
ATCACACGTCATCTCGCTCCCAGCTCCATCATCTTGCGAACCCCCGATAA
CGAGCCGAATTTCTCCACGATATGCGCAAGTACCACCCCCATTCGGGTCC
TGCCCGAGAGATCGTCGCCTGCACCCTACAAACGCTTCAACATGCCGCAG
TGACCGTAACAGTCAGCGGCAAGGAGGGGTGAGGTGTGCACGTTTCCTCT
TCACATTTGAAACTCACCTCGGCTCCTGCTCTGAGCAGCGCCTTCGCAAC
GCTAGGATGGATGTCTAG
back to top