mRNA_H-paniculata_contig5819.13424.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5819.13424.1
Unique NamemRNA_H-paniculata_contig5819.13424.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5819.13424.1 vs. uniprot
Match: A0A6H5JHL5_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHL5_9PHAE)

HSP 1 Score: 73.6 bits (179), Expect = 4.100e-12
Identity = 33/51 (64.71%), Postives = 41/51 (80.39%), Query Frame = 3 
Query:  120 KSSQEMQAAALFTDSYSLDKAKRYEILRTVGRGAFGEVFLAWDTQFRRRES 272
            + SQ      +F++ Y LDKAKRYEI+RTVGRGAFGEVFLAWDTQ ++RE+
Sbjct:   65 RGSQTHALMEIFSEPYGLDKAKRYEIIRTVGRGAFGEVFLAWDTQTKQREA 115
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5819.13424.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JHL5_9PHAE4.100e-1264.71Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5819contigH-paniculata_contig5819:7893..12527 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionCMGC family protein kinase
Ec32 orthologEc-13_000360.2
Exons2
Model size534
Cds size399
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5819.13424.1prot_H-paniculata_contig5819.13424.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5819 8027..12527 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.9898388-UTR-H-paniculata_contig5819:7892..80261622930632.9898388-UTR-H-paniculata_contig5819:7892..8026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5819 7893..8026 +
1691481381.7520297-UTR-H-paniculata_contig5819:7892..80261691481381.7520297-UTR-H-paniculata_contig5819:7892..8026Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5819 7893..8026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930633.013789-CDS-H-paniculata_contig5819:8026..81221622930633.013789-CDS-H-paniculata_contig5819:8026..8122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5819 8027..8122 +
1691481381.769581-CDS-H-paniculata_contig5819:8026..81221691481381.769581-CDS-H-paniculata_contig5819:8026..8122Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5819 8027..8122 +
1622930633.0335448-CDS-H-paniculata_contig5819:12224..125271622930633.0335448-CDS-H-paniculata_contig5819:12224..12527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5819 12225..12527 +
1691481381.7870975-CDS-H-paniculata_contig5819:12224..125271691481381.7870975-CDS-H-paniculata_contig5819:12224..12527Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5819 12225..12527 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5819.13424.1

>prot_H-paniculata_contig5819.13424.1 ID=prot_H-paniculata_contig5819.13424.1|Name=mRNA_H-paniculata_contig5819.13424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=133bp
MQAAALFTDSYSLDKAKRYEILRTVGRGAFGEVFLAWDTQFRRRESNSTD
TNSNSGEHEEEDSNSSNSNSSRRAPAATAPAAKTPYHEGIKTRKQDIPSS
HAGAETRVDDEKYRRDSGGFVALKSVACSSAGG
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mRNA from alignment at H-paniculata_contig5819:7893..12527+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5819.13424.1 ID=mRNA_H-paniculata_contig5819.13424.1|Name=mRNA_H-paniculata_contig5819.13424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4635bp|location=Sequence derived from alignment at H-paniculata_contig5819:7893..12527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGGCTGTGAGCTAAAGAAGCCTTGCGTGTGTTGACCGATCATCGTC
GACATCAAAAGCAACCCCAACGTCCAGTACACATTGGAATGGATTAATGC
TTAGACGAGTGACCAGGGTAAAAGTAGTCAAGAAATGCAAGCCGCGGCGT
TGTTTACGGACTCATACAGCTTGGACAAGGCGAAGCGGTACGAGATCCTC
CGCACCGTTGGAAGGGGGGCTTTCGGCGAGGTGTGATACAGTTCTATGCT
GTGTTGTGCTCTGCTGTATCGTGTAGGTGCCGTGTGCACCGTATTCATGT
AGTGCTTAACCGATTTTTGTCAACCCCAGAAGTCACATATTGGGATAAAA
CCGCCCATCTCTTGCGTCGCAGACCAGTTCCCCAATTTACTCAAGGGCTG
AACCTGTGCCAGCTTTTGCTATGTATATACCTCTATATACCTCTATAGAC
CACTGAACCAGTGAGGCATTACTATGCATGCTAAACCTCGCTACAATCAA
AACGCGGAGTGGGCGAGACATATGCCAGAGATCAGCCCTGGCTGATGTCT
TCACTCAATCAAAGGTATTCATGCCTAACTTTTCTCCCATATTCATTTTA
CGTACCCGCACTCGACCTGGCCAACTGACTGATTGTGTGAAGAGCAATTG
AGTGTACAAATAGCTTACTATTAATACCCGATATACAATGTACTTGTCTG
TGTCTATCGTGAACGGTTGCTGTACTGCATGCACTATTAATGCACAATAT
ACAATTGATTGTGCTCTTGTGCAGTACTGGATGACAGACTGGAGTCTCGT
AATAAACCTAGTTTGTTCATGTTTGGAGCTTTAGGGCGCTATGCGCACGA
GAGAGGCATCGATCGAAGGTCCGCCCTTCCCGCGCGGATCTTCTCGCGGC
CGACGCCTCTGTTCTCCTGAAAAACTCGGCCTTTGTTCATATATGACTCG
TCTGGGTTCATGAACTGTGGGTGTTTGTGTCGAGGTTGTTGTTGACCATC
GACTGGGTGCGCCGACTGTTTGCTGCGGCGTAGGGCCGTGTGGCTTGCTT
GCGCTGGGTGCTTATAAGCTGTGTATTCTCCTATCTACCGTATGCGGTGC
ACGCACAAAACGTCACGAGGCGAACCTGTACGCCTGTACTGTGTGGCACG
CCCTTTTGGGTCAGTAATTGTACCCCCGTATGCACATACACACAACATAC
AAACAGAAGCTATTCAAGATGTCAAGCTGCGTAGTCCAGTAGAATCACCT
CTACCAACGCACGCAATTCCCCATGGCTTGGGATTATTGGTGTTATATGA
GGGCTTTGCCCGTGAGGATCAACATTTTGTGTGTTCATGGACAGTATAAG
TTGTGTGGCACATACCATCCTCTCTCCCCTGCTCTTTTGCTGCTTTTCCT
GTACCTCCTGCACACTTGCGCACTTCGCATGCCTTTCACCCTGTGACTTA
ATAGTTCGTCGACAAAAATTTGACGGCTGCTTTCTAGGGTCTTCATCGCA
TTTAGTAGGATCACAAAATTTCGTTCGTGCGGGCGACTGGCATGATATAC
TCATGATTTCGTCGCGAACTCACGTGCACCGCGCTACACCACATGCATTC
ACTGTAATGGTACAATAGGTGCGCAGCACCATGCGTGTGTACATCAAGCA
ACATCAAGCAGCTCACCAATGAGCTACTCCGCAGGAACGGAGCAGCAGGA
CGCAGTGTTACTTGACGTTGCTACTTATTTGGGATTATTTTGCAGCATCG
TGGCACATACTATCTGCCCTGTTGTCCTGTACGAAGATTTATCTCTAGCC
GCTTTTGGGACGAGAGCAGAATTTGTGTTTTATCTTGGTCTCAGTATTGA
TAAGCACTTCCAAACACGTCAGTGGTGGTTTAGAACGAACCCAAAAAAAC
TAAAAATGCGGCACAAACGATCACGTCTCTGCGTTACAAGAAGCCCGGAA
ACAACACTCAAGCATACAGCCAGCACCGGCGCGGAAGCGAACACATCGAC
GATTATTTGTACACCAGCACAATGTAGCGAGTACTGGTGTGGAGGCATAC
AGAGCAAATAGGTTCTGCACACCGAGCACACAGCAGCCCTATCAGTGGCC
CAAAATACCACACACAAAACGCATATGCACAGCAAAATAAGACTGGGACG
GACTGTCTGTATACTTTCAAAATCCCTTTTCGGCCTTGGTCCGTCTTCTG
CTATACTCACAGATAGTGCCACTCTATTTTACTAGACACTTGGCGTGTGC
CCTTTATCTCTACCTTCATTTATCTCACGTCCATTCCGCACAATCTGCCG
GAGCCGACCATTCTCTCGTAATCACTGCAATGATGTGCCATTAGTGTTGC
CGTACCATAAACATACATCCTACCAACCAATAACCATGGCGCAAACCTTG
ATAAATTTACATGAACAAGGTGCTGTAAGGACTCTCAAACTACAGCCACG
CTCTGCAATTACACGCAGGTACAATCAAGACAGATGGGTGAAGTGCGCGC
GACGTTTGGCAGGTTTAAATGGCGACCTCAAGGCTGAAAACAATACGGTG
AAGTTAGCCTGCCACGCTGTACGAACCAGACGTAAACGTTTGCTGTATTT
CTTCGTTTTAGTCATCATCTACGAGGTGTTCACACACACATATATATATA
TTCTTACGTTTTATTTAACATATTATATCAAACATAAAAAAATTCAACAT
ATTGTATCAAGCACGGAAAATAAACCATGGAAGACACTTGCGCACGGGGC
GACGGAGAACTTCACGCCTCCTGCATCTTCATGCGCTCACCCGATACTAC
CACAGTTTCCAGCGGACACGACCGAAATAGTCAAGCTTGACCAATTTTTT
CTAAGTTCACCGATAAAATTGAACACAAAAAAACAAGGAAATATGAAATG
TAGTGAAGAGGAACTGAAAAAGAAAGAAACCTGACAATGGAAATGTACAT
CTTGTTCCCCACGAGTCGTGAACTCCAATTTCTGTTGTTGGGGTCCAGGA
TATTGCCTGAAATGAATTATCGCCTGTTTTCCAGGTCAAAATCCGCGAGT
AGATATCTAATTCCAAGTGCTCGTTCTGATATTTTTTTATCCATTCTGAG
TCAAACAAACATCATGCCCTGTAGCAGTAGTTTGGAATCTCGTTTTCAGT
GGCGTTCTCTCACGAAGTCAACGGTTCACGTTGGTAGTAGGCCGAGCAGA
GTCCTTCAGTGACATATCGTATCGAGGTCGAGCTCTGAGGAGTTAGTTAC
AGTCCTGCCGCCGGCGGCGGCGGCCCATCAGCCCTTGGGAGGGTCACCCA
TCGCTCATGAGCGCTCCCTCCCGCGTAGGGGGCGCCAGAATGATGTTTTT
GGAAGTCAGTATTTAATAATGCACATATGATTCTGAGATGCTTTTTCTCC
TTTCAACCGATACACCGGTGCAAGCATGCATCCATTGTGTGTAATTGGGA
AATAAGGCAATTTCGTGTATACTCCACGGCAGGCAGCCATTGTATTTACG
GACCTTGCTATGATCCCACTCCCTTTGTTGGCGTTTTTTTCGTGTGTAAA
ATGGCAGACAAAGCAACGCCGGAATACAAACATAACAAACTCCACGTGTT
ACAGCAAACAAGAATTACAAAAAAACAGGAAAAAAAAGTGCAACCGCTGC
ATGGCGAAGAGCAACACTCTCAATTCTTTTCGTGTTCACGTCAAGGGTAG
CAGTGCCCCGGTGAAGCGTTCGCCTATCTGGTAGCAGGCTGACGAATGTG
CGTCACAGTGTCGACGGAAGATCCTCTTTCTCCACGAATTTTCGGGCGGT
GCCCTACAAACAAGTACCCAGCTTACTAGCCTGAGATAATTACACAAATT
AATATATAGCCCCTCTGATGTCGCAGCCTCTCTCTCCCCCTGCCTCGCTA
CAGGATATTCTCGCATCATCCACTAAGGAAGCGAAGTGGATACAAACAGT
GAATAATTAAGTTATTTTGACTAACTTTCTAATGACATTTTTCCCTTCCA
CAGTGTGAAGAAAAACAACGAACGCAAATTTAATGAGAGGAACTGTTATA
CGGGATAGATAGATCTTGCATGTGTCTTATGTGATACGACTTCGTTCAAT
GCCCCAAATCCAAACGTTTCCAGCTCCCAATGATCAATAAATAGACTAAA
TATATGTAAGAGAGAGAAAGAGAGAGAGAGATTGGCTTCCGAACGTATGC
AGACAGAAGCTTTTGGGGGGGGACACTCTCGTTAACAAGAAAGCCAACTG
AAAAAAAACAACGTGCTGACGAAAACAGAGCTAGTCACGATACGGCATCC
ATTGCACTGAATCGTTGAATTGTTTAAAACAGGTTTTTCTGGCGTGGGAC
ACACAGTTCCGACGAAGGGAGAGCAACAGCACCGATACCAACAGCAACAG
CGGTGAGCACGAAGAAGAGGACAGCAACAGCAGCAACAGCAACAGCTCAC
GACGAGCACCAGCAGCAACAGCACCAGCAGCAAAGACACCGTATCATGAA
GGAATAAAAACCAGGAAACAAGATATACCATCGTCACATGCAGGAGCAGA
AACAAGAGTGGATGATGAAAAATATCGCCGTGATAGTGGGGGTTTCGTGG
CGCTCAAGAGCGTTGCCTGCTCGTCTGCCGGCGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig5819:7893..12527+

>mRNA_H-paniculata_contig5819.13424.1 ID=mRNA_H-paniculata_contig5819.13424.1|Name=mRNA_H-paniculata_contig5819.13424.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at H-paniculata_contig5819:7893..12527+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAAGCCGCGGCGTTGTTTACGGACTCATACAGCTTGGACAAGGCGAA
GCGGTACGAGATCCTCCGCACCGTTGGAAGGGGGGCTTTCGGCGAGATGC
AAGCCGCGGCGTTGTTTACGGACTCATACAGCTTGGACAAGGCGAAGCGG
TACGAGATCCTCCGCACCGTTGGAAGGGGGGCTTTCGGCGAGGTTTTTCT
GGCGTGGGACACACAGTTCCGACGAAGGGAGAGCAACAGCACCGATACCA
ACAGCAACAGCGGTGAGCACGAAGAAGAGGACAGCAACAGCAGCAACAGC
AACAGCTCACGACGAGCACCAGCAGCAACAGCACCAGCAGCAAAGACACC
GTATCATGAAGGAATAAAAACCAGGAAACAAGATATACCATCGTCACATG
CAGGAGCAGAAACAAGAGTGGATGATGAAAAATATCGCCGTGATAGTGGG
GGTTTCGTGGCGCTCAAGAGCGTTGCCTGCTCGTCTGCCGGCGGGGTTTT
TCTGGCGTGGGACACACAGTTCCGACGAAGGGAGAGCAACAGCACCGATA
CCAACAGCAACAGCGGTGAGCACGAAGAAGAGGACAGCAACAGCAGCAAC
AGCAACAGCTCACGACGAGCACCAGCAGCAACAGCACCAGCAGCAAAGAC
ACCGTATCATGAAGGAATAAAAACCAGGAAACAAGATATACCATCGTCAC
ATGCAGGAGCAGAAACAAGAGTGGATGATGAAAAATATCGCCGTGATAGT
GGGGGTTTCGTGGCGCTCAAGAGCGTTGCCTGCTCGTCTGCCGGCGGG
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