mRNA_H-paniculata_contig5817.13423.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5817.13423.1
Unique NamemRNA_H-paniculata_contig5817.13423.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig5817.13423.1 vs. uniprot
Match: D8LNJ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNJ5_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.210e-55
Identity = 105/160 (65.62%), Postives = 121/160 (75.62%), Query Frame = 3 
Query:  204 VGRRARDHGSRAPIHVINMHTITLPRNVKSAYAGTFEGRPSSLQQAVRLLFSFPDEKTVSVQKDASSRIMGLTPVETRGGGVA-ASWISVTAVEGSSCAKAGMPVGENSILTHVNGFDVSPAAYRSLAPAPFGGGEGWGAAVLPAVEGGERGDCITITFV 680
            VG R  DHG+ AP       T+ LPRNVKSAYAGTFEGRPSS QQA RL FSFP E+TV++Q+ A+   +GL  VETRGGG A  SW+++TA + S CA AG+PVGE S+LTHVNGFDVSP AYRSLAP  FG GEGW AAVLPA+E G  GD IT+TFV
Sbjct:  526 VGGRPGDHGTGAP-------TVALPRNVKSAYAGTFEGRPSSFQQAARLWFSFPGERTVTLQRQATLEKLGLLHVETRGGGGAIGSWVTITAADASPCAAAGVPVGETSLLTHVNGFDVSPPAYRSLAPRAFGDGEGWAAAVLPALESGG-GDSITLTFV 677
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5817.13423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNJ5_ECTSI1.210e-5565.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5817contigH-paniculata_contig5817:12359..13075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.4
Seed ortholog evalue1.9e-10
Seed eggNOG ortholog157072.XP_008872243.1
Hectar predicted targeting categoryother localisation
EggNOG OGs2CUJ5@1,2S4E6@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_000440.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size683
Cds size426
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5817.13423.1prot_H-paniculata_contig5817.13423.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5817 12359..12784 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.8993962-CDS-H-paniculata_contig5817:12358..127841622930632.8993962-CDS-H-paniculata_contig5817:12358..12784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5817 12359..12784 -
1691481381.7125535-CDS-H-paniculata_contig5817:12358..127841691481381.7125535-CDS-H-paniculata_contig5817:12358..12784Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5817 12359..12784 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.9154425-UTR-H-paniculata_contig5817:12784..127951622930632.9154425-UTR-H-paniculata_contig5817:12784..12795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5817 12785..12795 -
1691481381.729777-UTR-H-paniculata_contig5817:12784..127951691481381.729777-UTR-H-paniculata_contig5817:12784..12795Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5817 12785..12795 -
1622930632.9339511-UTR-H-paniculata_contig5817:12829..130751622930632.9339511-UTR-H-paniculata_contig5817:12829..13075Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5817 12830..13075 -
1691481381.7389512-UTR-H-paniculata_contig5817:12829..130751691481381.7389512-UTR-H-paniculata_contig5817:12829..13075Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5817 12830..13075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5817.13423.1

>prot_H-paniculata_contig5817.13423.1 ID=prot_H-paniculata_contig5817.13423.1|Name=mRNA_H-paniculata_contig5817.13423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=142bp
MHTITLPRNVKSAYAGTFEGRPSSLQQAVRLLFSFPDEKTVSVQKDASSR
IMGLTPVETRGGGVAASWISVTAVEGSSCAKAGMPVGENSILTHVNGFDV
SPAAYRSLAPAPFGGGEGWGAAVLPAVEGGERGDCITITFV*
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mRNA from alignment at H-paniculata_contig5817:12359..13075-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5817.13423.1 ID=mRNA_H-paniculata_contig5817.13423.1|Name=mRNA_H-paniculata_contig5817.13423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=717bp|location=Sequence derived from alignment at H-paniculata_contig5817:12359..13075- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGAAAATACTCTTCAGGGCCACGCCGCCGATCTACCGAGCAAGCGTAGC
GACCGAGCTGATAGAGGAATGCGCGAAAACGCCATACGTGCACGTTGGCA
CATGGCAGCCTTTGCTTAAGCGTCGTGCCGGGGTCACCCTAGGAGGTGGT
GATGGAGATAACGGCAGCGGGAGTGTGATCGGCATTGGCTATGGCAGTGA
AGAGTGGGAAGACGTGCGAGAGACCATGGCTCGCGCGCACCAATTCGTAA
ATGGGTTTCGGTCGGCAGGGATTCGGGTAGACGTTATCAACATGCACACG
ATAACCCTGCCGAGGAACGTTAAGTCGGCCTATGCGGGGACATTTGAGGG
CAGGCCTTCGTCGTTACAGCAGGCCGTGCGCCTCTTGTTTTCGTTCCCTG
ATGAAAAAACCGTTTCGGTCCAGAAGGATGCCTCATCTAGAATCATGGGT
CTCACCCCGGTGGAGACCAGGGGTGGCGGGGTGGCGGCCTCGTGGATTTC
TGTTACGGCGGTGGAAGGATCTTCGTGTGCGAAGGCTGGCATGCCTGTAG
GCGAGAATTCCATCTTGACTCACGTCAATGGGTTTGATGTGTCCCCCGCC
GCGTATCGGTCGCTAGCGCCGGCGCCGTTTGGGGGCGGGGAGGGCTGGGG
AGCAGCCGTTTTGCCTGCTGTTGAGGGTGGAGAACGCGGTGATTGTATCA
CCATCACGTTCGTCTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig5817:12359..13075-

>mRNA_H-paniculata_contig5817.13423.1 ID=mRNA_H-paniculata_contig5817.13423.1|Name=mRNA_H-paniculata_contig5817.13423.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=852bp|location=Sequence derived from alignment at H-paniculata_contig5817:12359..13075- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCACACGATAACCCTGCCGAGGAACGTTAAGTCGGCCTATGCGGGGAC
ATTTGAGGGCAGGCCTTCGTCGTTACAGCAGGCCGTGCGCCTCTTGTTTT
CGTTCCCTGATGAAAAAACCGTTTCGGTCCAGAAGGATGCCTCATCTAGA
ATCATGGGTCTCACCCCGGTGGAGACCAGGGGTGGCGGGGTGGCGGCCTC
GTGGATTTCTGTTACGGCGGTGGAAGGATCTTCGTGTGCGAAGGCTGGCA
TGCCTGTAGGCGAGAATTCCATCTTGACTCACGTCAATGGGTTTGATGTG
TCCCCCGCCGCGTATCGGTCGCTAGCGCCGGCGCCGTTTGGGGGCGGGGA
GGGCTGGGGAGCAGCCGTTTTGCCTGCTGTTGAGGGTGGAGAACGCGGTG
ATTGTATCACCATCACGTTCGTCTAAATGCACACGATAACCCTGCCGAGG
AACGTTAAGTCGGCCTATGCGGGGACATTTGAGGGCAGGCCTTCGTCGTT
ACAGCAGGCCGTGCGCCTCTTGTTTTCGTTCCCTGATGAAAAAACCGTTT
CGGTCCAGAAGGATGCCTCATCTAGAATCATGGGTCTCACCCCGGTGGAG
ACCAGGGGTGGCGGGGTGGCGGCCTCGTGGATTTCTGTTACGGCGGTGGA
AGGATCTTCGTGTGCGAAGGCTGGCATGCCTGTAGGCGAGAATTCCATCT
TGACTCACGTCAATGGGTTTGATGTGTCCCCCGCCGCGTATCGGTCGCTA
GCGCCGGCGCCGTTTGGGGGCGGGGAGGGCTGGGGAGCAGCCGTTTTGCC
TGCTGTTGAGGGTGGAGAACGCGGTGATTGTATCACCATCACGTTCGTCT
AA
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