mRNA_H-paniculata_contig58161.13420.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58161.13420.1
Unique NamemRNA_H-paniculata_contig58161.13420.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: D8LEL0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 6.990e-21
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 TQTKQLCEDVCEGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYEY 198
            + T ++CE  C G  +FG QYG EC+CGG+ TD LQHGES  C+YEC GD+ +VCGG + MSVY Y
Sbjct:  213 SMTMEMCEAECSGNTYFGMQYGTECFCGGESTDLLQHGESTACDYECPGDSEQVCGGFYAMSVYSY 278          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: D7FUE8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUE8_ECTSI)

HSP 1 Score: 86.7 bits (213), Expect = 6.010e-20
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 1
Query:    1 TQTKQLCEDVCEGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYEY 198
            + TK++CE  C G ++FG QYG EC+CGG  T+ L++GES  C+YEC GD+ + CGG + MSVY Y
Sbjct:   97 SMTKEMCEAECTGNRYFGMQYGSECFCGGSSTNLLENGESSACDYECPGDSEQECGGFYAMSVYSY 162          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: A0A6H5KDP0_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDP0_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 3.400e-19
Identity = 35/63 (55.56%), Postives = 49/63 (77.78%), Query Frame = 1
Query:   13 QLCEDVC--EGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYE 195
            ++C D+C   GYK+ GTQ+G++C+C G  TDHL+HGES +C++ CAG+  E+CGG WCMSV E
Sbjct:  284 EMCMDICIQGGYKYSGTQHGYQCFCRGKYTDHLEHGESADCDHPCAGNENEICGGPWCMSVRE 346          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: D8LF45_ECTSI (Beta-xylosidase, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF45_ECTSI)

HSP 1 Score: 81.6 bits (200), Expect = 1.530e-18
Identity = 31/60 (51.67%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   13 QLCEDVCEGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVY 192
            + C+  CEGY F+G QYG +C+CG  D D  +HGES+EC   C GD   +CGG W M+VY
Sbjct:   28 ETCKAACEGYAFYGLQYGKQCFCGASDEDFTRHGESQECLLRCTGDRKSICGGVWAMNVY 87          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: D7G4P0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4P0_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 2.140e-16
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 TKQLCEDVCEGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYE 195
            T+++C   C  Y ++GTQY  ECWCG  +T +  +G SEEC   CAGDA E+CGG + MSVY+
Sbjct:   97 TEEVCSGHCSAYPYYGTQYSTECWCGDGETAYDTNGASEECVMPCAGDASEICGGPYSMSVYQ 159          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: A0A6H5KTL8_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL8_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 2.440e-16
Identity = 31/60 (51.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:   16 LCEDVCEGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYE 195
            +C D C  Y ++GTQY  ECWCG ++ D+  +G S EC   CAGDA E+CGG + MSVY+
Sbjct:   95 VCSDHCSAYPYYGTQYSTECWCGDENADYGANGASNECVVPCAGDASEMCGGSYSMSVYQ 154          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: D8LDH2_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDH2_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.990e-16
Identity = 36/68 (52.94%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    7 TKQLCEDVCEGYKFFGTQYGHECWCGG----DDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYEY 198
            T ++C   CEG  FFG QYG ECWCG     DD D  +HG S  C Y CAGD  + CGG W +S+YEY
Sbjct:  414 TTEMCATYCEGDDFFGMQYGSECWCGSTDEKDDEDLFRHG-STTCEYPCAGDEEQTCGGYWAISLYEY 480          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: D7FLZ0_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ0_ECTSI)

HSP 1 Score: 68.9 bits (167), Expect = 1.130e-12
Identity = 26/46 (56.52%), Postives = 37/46 (80.43%), Query Frame = 1
Query:   37 GYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGR 174
            GY++ GTQYG++C+CGG+DTDHL+H ES +C++ CAGD  +   GR
Sbjct:  145 GYRYSGTQYGYQCFCGGEDTDHLKHRESVDCDFTCAGDENKYAAGR 190          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: A0A6H5K060_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K060_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.810e-12
Identity = 30/63 (47.62%), Postives = 43/63 (68.25%), Query Frame = 1
Query:    7 TKQLCEDVCEGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYE 195
            T ++C   C  Y+++GTQY  +CWCG D+ D+  +G  E C+  C+GDA E+CGG + MSVYE
Sbjct:   99 TSEICLGNCGAYQYYGTQYSTQCWCG-DNADYDANGAGE-CDMACSGDASEICGGFYAMSVYE 159          
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Match: A0A6H5JX48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.830e-12
Identity = 29/43 (67.44%), Postives = 34/43 (79.07%), Query Frame = 1
Query:   70 ECWCGGDDTDHLQHGESEECNYECAGDAGEVCGGRWCMSVYEY 198
            EC+CGG+ TD LQHGES  CNYEC GD+ +VCGG + MSVY Y
Sbjct:  730 ECFCGGESTDLLQHGESTACNYECPGDSDQVCGGFYAMSVYSY 772          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58161.13420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEL0_ECTSI6.990e-2157.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUE8_ECTSI6.010e-2053.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDP0_9PHAE3.400e-1955.56WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LF45_ECTSI1.530e-1851.67Beta-xylosidase, putative n=1 Tax=Ectocarpus silic... [more]
D7G4P0_ECTSI2.140e-1650.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KTL8_9PHAE2.440e-1651.67WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LDH2_ECTSI3.990e-1652.94WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FLZ0_ECTSI1.130e-1256.52EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5K060_9PHAE1.810e-1247.62Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX48_9PHAE1.830e-1267.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58161contigH-paniculata_contig58161:333..780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score97.4
Seed ortholog evalue2.6e-18
Seed eggNOG ortholog2880.D7FUE6
KEGG koko:K22017
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Sushi, nidogen and EGF-like
EggNOG OGsKOG4157@1,KOG4157@2759,KOG4291@1,KOG4291@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size201
Cds size201
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930632.6660125-CDS-H-paniculata_contig58161:332..4041622930632.6660125-CDS-H-paniculata_contig58161:332..404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58161 333..404 +
1691481381.5741138-CDS-H-paniculata_contig58161:332..4041691481381.5741138-CDS-H-paniculata_contig58161:332..404Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58161 333..404 +
1622930632.6854243-CDS-H-paniculata_contig58161:651..7801622930632.6854243-CDS-H-paniculata_contig58161:651..780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58161 652..780 +
1691481381.5916688-CDS-H-paniculata_contig58161:651..7801691481381.5916688-CDS-H-paniculata_contig58161:651..780Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58161 652..780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58161.13420.1prot_H-paniculata_contig58161.13420.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58161 333..780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58161.13420.1

>prot_H-paniculata_contig58161.13420.1 ID=prot_H-paniculata_contig58161.13420.1|Name=mRNA_H-paniculata_contig58161.13420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=67bp
TQTKQLCEDVCEGYKFFGTQYGHECWCGGDDTDHLQHGESEECNYECAGD
AGEVCGGRWCMSVYEY*
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mRNA from alignment at H-paniculata_contig58161:333..780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58161.13420.1 ID=mRNA_H-paniculata_contig58161.13420.1|Name=mRNA_H-paniculata_contig58161.13420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=448bp|location=Sequence derived from alignment at H-paniculata_contig58161:333..780+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCAAACCAAACAGCTGTGCGAGGATGTGTGTGAAGGCTACAAGTTCTT CGGGACGCAATACGGGCACGAGGTGAGTGCGCAAATCGTTGTGGTAATGT CTCGGAGGTATTCTCGATGGCACTCCTTTCAGACAGCGCCCCCCTACGGG GCACGTATGAAGCGAGTGTAAAGAACGTGTGGAAATGCGAGATATGCTCT CGACGGAACCGGTCCTGCATCGCCACTCGCTATGGGCTTCGAGATATCTT CCCGACTGTCGCACCCACTAACGTCTGATACCCAACCCATTTCCTCGCAT GGTGTACAAAATCGAGCAGTGCTGGTGCGGCGGCGACGATACCGACCATC TCCAGCACGGCGAATCCGAGGAGTGCAACTACGAGTGTGCGGGAGATGCT GGCGAAGTATGCGGAGGAAGATGGTGCATGAGTGTCTACGAATACTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig58161:333..780+

>mRNA_H-paniculata_contig58161.13420.1 ID=mRNA_H-paniculata_contig58161.13420.1|Name=mRNA_H-paniculata_contig58161.13420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at H-paniculata_contig58161:333..780+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCAAACCAAACAGCTGTGCGAGGATGTGTGTGAAGGCTACAAGTTCTT
CGGGACGCAATACGGGCACGAGACCCAAACCAAACAGCTGTGCGAGGATG
TGTGTGAAGGCTACAAGTTCTTCGGGACGCAATACGGGCACGAGTGCTGG
TGCGGCGGCGACGATACCGACCATCTCCAGCACGGCGAATCCGAGGAGTG
CAACTACGAGTGTGCGGGAGATGCTGGCGAAGTATGCGGAGGAAGATGGT
GCATGAGTGTCTACGAATACTAGTGCTGGTGCGGCGGCGACGATACCGAC
CATCTCCAGCACGGCGAATCCGAGGAGTGCAACTACGAGTGTGCGGGAGA
TGCTGGCGAAGTATGCGGAGGAAGATGGTGCATGAGTGTCTACGAATACT
AG
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