mRNA_H-paniculata_contig58119.13412.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A1X7TFD5_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7TFD5_AMPQE) HSP 1 Score: 54.3 bits (129), Expect = 1.760e-7 Identity = 28/74 (37.84%), Postives = 45/74 (60.81%), Query Frame = 1
Query: 76 EMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGIHSRKLRPLHPQRPAQKW 297
E + L EN +W V PK++ VV + ++KRKIGE+G+VE+YK R +A G +S+K H ++ A ++
Sbjct: 4 EFESLEENQVWDLVELPKDRRVVGSKWVFKRKIGENGKVERYKARLVAQG-------YSQKFNMNHARKNASRY 70
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A151SIJ2_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SIJ2_CAJCA) HSP 1 Score: 53.5 bits (127), Expect = 5.100e-7 Identity = 23/71 (32.39%), Postives = 40/71 (56.34%), Query Frame = 1
Query: 49 EHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGIHSRKL 261
E W++ +VE+Q + +NG W PK + + +YK K+ E G+++K+K R + G Q G+ RK+
Sbjct: 37 EKWKKAMDVEIQAIEKNGTWELTDLPKGQKTIGVKWVYKTKLNEKGEIDKFKARLVVKGYNQEHGVDYRKI 107
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A1X7VXK3_AMPQE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7VXK3_AMPQE) HSP 1 Score: 53.5 bits (127), Expect = 1.570e-6 Identity = 31/80 (38.75%), Postives = 44/80 (55.00%), Query Frame = 1
Query: 7 EPKKSQGAQASPEWEHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
EP A +S E + W+ E EM+ L N ++ V PKNK V+ + I++RKI DG VE+YK R +A Q G+
Sbjct: 5 EPSTINEALSSSEADKWKEAMEREMESLKANDVYDLVELPKNKEVIGSKWIFRRKINADGSVERYKARLVAQRFSQTHGL 84
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A4Y1RRK6_PRUDU (Transposable element protein n=1 Tax=Prunus dulcis TaxID=3755 RepID=A0A4Y1RRK6_PRUDU) HSP 1 Score: 51.6 bits (122), Expect = 1.770e-6 Identity = 25/59 (42.37%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 70 EVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
+VE++ + +NG W V PK + V IYK K+ E G+V+KYK R +A G Q GI
Sbjct: 2 DVEIKSIEKNGTWELVDLPKGEKTVGVKWIYKTKLNEKGEVDKYKARLVAKGYTQEHGI 60
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A151T998_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T998_CAJCA) HSP 1 Score: 51.2 bits (121), Expect = 2.550e-6 Identity = 22/59 (37.29%), Postives = 35/59 (59.32%), Query Frame = 1
Query: 70 EVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
++E++ + +NG W + RPK VV +YK K+ E G+V+K+K R + G Q GI
Sbjct: 2 DIEIEAIEKNGTWELIDRPKGAKVVGVKWVYKTKLNEKGEVDKFKARLVVKGYAQQYGI 60
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A151SRV2_CAJCA (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SRV2_CAJCA) HSP 1 Score: 50.8 bits (120), Expect = 3.220e-6 Identity = 25/64 (39.06%), Postives = 37/64 (57.81%), Query Frame = 1
Query: 55 WQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
W++ EVE++ + +N W V PKN + IYK K+ E G+V+K+K R +A G Q GI
Sbjct: 7 WRQTMEVEIKAIEKNHTWELVELPKNAKKIGVKWIYKTKLNEHGEVDKFKARLVAKGYSQEHGI 70
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A2N5SCW9_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Puccinia coronata f. sp. avenae TaxID=200324 RepID=A0A2N5SCW9_9BASI) HSP 1 Score: 53.5 bits (127), Expect = 4.420e-6 Identity = 26/82 (31.71%), Postives = 47/82 (57.32%), Query Frame = 1
Query: 1 PVEPKKSQGAQASPEWEHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
P PK + A +SPE W ++E+ +++ G+WT V P N ++ T+ ++++K +G + K+K R A G+ Q +GI
Sbjct: 853 PSVPKTYRSAMSSPEAAEWSSAIKLELDAMVQLGVWTVVPIPSNHHLLGTIWVFRKKYDANGNLMKFKARLCAQGSAQQEGI 934
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A5N6NBX2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NBX2_9ASTR) HSP 1 Score: 52.8 bits (125), Expect = 7.730e-6 Identity = 25/64 (39.06%), Postives = 36/64 (56.25%), Query Frame = 1
Query: 55 WQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
WQ + E+Q +++N W V P+N+ + IYK K+ E GQV+KYK R + G Q GI
Sbjct: 210 WQDAMDCEIQSILKNDTWELVDAPQNQKTIGVKWIYKTKLNEKGQVDKYKARLVVKGYKQKYGI 273
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A5N6P988_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P988_9ASTR) HSP 1 Score: 52.4 bits (124), Expect = 1.090e-5 Identity = 23/67 (34.33%), Postives = 37/67 (55.22%), Query Frame = 1
Query: 49 EHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGIH 249
E W + E E++ + NG W V P+ + + IYK K+ E G+++K+K R + G Q KGI+
Sbjct: 258 EKWMQAMEAEIKAIERNGTWELVDLPEGSIPIGVKWIYKTKLNEKGEIDKFKARLVVKGYAQQKGIN 324
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Match: A0A5A7TEE6_CUCME (Gag/pol protein n=2 Tax=Cucumis melo var. makuwa TaxID=1194695 RepID=A0A5A7TEE6_CUCME) HSP 1 Score: 50.1 bits (118), Expect = 1.100e-5 Identity = 24/66 (36.36%), Postives = 36/66 (54.55%), Query Frame = 1
Query: 49 EHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTMMIYKRKIGEDGQVEKYKCRQIANGNCQIKGI 246
+ W +EM+ + N IW + R V IYKRK GEDGQV+ ++ R +A G Q++G+
Sbjct: 31 DEWINAMNLEMESMYFNSIWDLIDRHDGVKPVGCKWIYKRKRGEDGQVQTFRARLVAKGYTQVEGV 96 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58119.13412.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig58119.13412.1 >prot_H-paniculata_contig58119.13412.1 ID=prot_H-paniculata_contig58119.13412.1|Name=mRNA_H-paniculata_contig58119.13412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp PVEPKKSQGAQASPEWEHWQREEEVEMQGLIENGIWTQVGRPKNKLVVSTback to top mRNA from alignment at H-paniculata_contig58119:690..986+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig58119.13412.1 ID=mRNA_H-paniculata_contig58119.13412.1|Name=mRNA_H-paniculata_contig58119.13412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at H-paniculata_contig58119:690..986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig58119:690..986+ >mRNA_H-paniculata_contig58119.13412.1 ID=mRNA_H-paniculata_contig58119.13412.1|Name=mRNA_H-paniculata_contig58119.13412.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig58119:690..986+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |