mRNA_H-paniculata_contig58117.13411.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig58117.13411.1
Unique NamemRNA_H-paniculata_contig58117.13411.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A151T355_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Cajanus cajan TaxID=3821 RepID=A0A151T355_CAJCA)

HSP 1 Score: 97.8 bits (242), Expect = 7.640e-22
Identity = 40/82 (48.78%), Postives = 53/82 (64.63%), Query Frame = 1
Query:    7 PTRPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDE 252
            PT+   G TP E WHG TP ++HL+VFGC  Y +    +R KLD K+  G+FLGY   S  Y +YNP  K + +SRN++FDE
Sbjct:  599 PTKALKGNTPFEAWHGRTPSVEHLKVFGCVCYALVPEVKRDKLDQKSEVGIFLGYSSYSKGYRIYNPATKKILVSRNVKFDE 680          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A7S1T3E5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1T3E5_9CHLO)

HSP 1 Score: 85.9 bits (211), Expect = 6.000e-20
Identity = 39/76 (51.32%), Postives = 47/76 (61.84%), Query Frame = 1
Query:   25 GGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDE 252
            GG P     G    L  +RVFGC AYV     QRRKLDD+AW GVF+GY  +SP++ VYNP  +    SRN+ FDE
Sbjct:   16 GGVPFTLATGRRADLSSMRVFGCPAYVHVDKSQRRKLDDRAWKGVFVGYASESPAWLVYNPVTRRAVSSRNVVFDE 91          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A068B703_GOSBA (Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A068B703_GOSBA)

HSP 1 Score: 90.9 bits (224), Expect = 2.080e-19
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 RAPTRPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDEEDF 261
            + PT+     TP E W G  P++ HL++FGC AY     QQR+KLDD+    +F+GYDK S +Y +YNP  K + +SR++ FDE D+
Sbjct:  686 QCPTKSVRHKTPEEAWSGHKPRVGHLKIFGCIAYAHVPEQQRKKLDDRGEKCIFIGYDKRSKAYRLYNPLTKKLIISRDVEFDEADY 772          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A6H5FV69_9HEMI (Uncharacterized protein n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FV69_9HEMI)

HSP 1 Score: 90.1 bits (222), Expect = 3.860e-19
Identity = 41/84 (48.81%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 RAPTRPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDE 252
            R+P + H+  TP E W G+ PKL H+R+FGC A+    S +RRKLD +A   +FLGY  +S +Y +YNP N+ V LSR++RF E
Sbjct:  181 RSPCKSHSS-TPEEIWSGKKPKLSHIRIFGCKAFAHVPSDRRRKLDKRATVCIFLGYSLESKAYRLYNPANRRVFLSRDVRFSE 263          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: G4TYM6_SERID (Integrase catalytic domain-containing protein n=3 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TYM6_SERID)

HSP 1 Score: 87.8 bits (216), Expect = 2.460e-18
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   13 RPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDEEDF 261
            R HNG TP E WHG+ P +DHLRVFGC AYV     QR  LD      +F+GY  D P +  +NP+ + +  S +  FDE  F
Sbjct:  639 RVHNGKTPYEHWHGKAPSVDHLRVFGCLAYVFVPKSQRNALDSHTEKCIFVGYPSDRPGWVFWNPQTRKIIHSDSAAFDERVF 721          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A699Q9B6_TANCI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699Q9B6_TANCI)

HSP 1 Score: 82.0 bits (201), Expect = 2.580e-18
Identity = 38/75 (50.67%), Postives = 48/75 (64.00%), Query Frame = 1
Query:   31 TPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDEE 255
            TP E W+G  P + H RVFG  AYV   SQ+R KLDD+    VF+GYDK S  Y +YNP  + V +S ++ FDEE
Sbjct:    9 TPQEAWNGLKPTVSHPRVFGSIAYVRISSQRRLKLDDRCEKHVFVGYDKQSKGYKLYNPVTRKVVVSIDVEFDEE 83          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: G4TZX2_SERID (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TZX2_SERID)

HSP 1 Score: 87.4 bits (215), Expect = 3.120e-18
Identity = 38/83 (45.78%), Postives = 48/83 (57.83%), Query Frame = 1
Query:   13 RPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDEEDF 261
            R HNG TP E WHG+ P +DHLRVFGC AYV     QR  LD      +F+GY  D P +  +NP+ + +  S +  FDE  F
Sbjct:  122 RVHNGKTPYEHWHGKAPSVDHLRVFGCLAYVFIPKSQRNALDSHTEKCIFVGYPSDRPGWVFWNPQTRKIIHSDSAVFDERVF 204          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A4Y2LAF7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2LAF7_ARAVE)

HSP 1 Score: 86.3 bits (212), Expect = 4.630e-18
Identity = 42/84 (50.00%), Postives = 53/84 (63.10%), Query Frame = 1
Query:    1 RAPTRPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDE 252
            R PT+P    TP   W    P L H+RVFGC AY   Q Q+RRKLDDKA  G+FLGYD  S  Y +Y  +NK + +SR ++F+E
Sbjct:  149 RLPTKPKRK-TPYVLWANRKPDLSHIRVFGCKAYACIQKQKRRKLDDKAVEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFNE 230          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A2U1QJ52_ARTAN (Uncharacterized protein n=1 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1QJ52_ARTAN)

HSP 1 Score: 87.0 bits (214), Expect = 4.640e-18
Identity = 42/86 (48.84%), Postives = 55/86 (63.95%), Query Frame = 1
Query:    1 RAPTRPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDEED 258
            R P++  +  TP E W+G  P + HLRVF   AYV   SQ+R KLDDK+   VF+GYDK S  Y +YNP    V +SR++ FDEE+
Sbjct:  406 RCPSKSLDNKTPQEAWNGMKPTVSHLRVFESIAYVHVPSQRRSKLDDKSEKHVFVGYDKQSKGYKLYNPITGKVVVSRDVEFDEEE 491          
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Match: A0A177U095_9BASI (Integrase catalytic domain-containing protein n=2 Tax=Tilletia TaxID=13289 RepID=A0A177U095_9BASI)

HSP 1 Score: 85.9 bits (211), Expect = 1.180e-17
Identity = 39/84 (46.43%), Postives = 55/84 (65.48%), Query Frame = 1
Query:    7 PTRPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRR-KLDDKAWAGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDEE 255
            P+RP  G TP E W+G  P++DHLR+FGC A+VM   + R   L  +A  GVF+GYDK S  Y V+ P+  ++ +SRN+ F E+
Sbjct:  359 PSRPLGGKTPFELWYGTPPRIDHLRIFGCLAFVMLPDKAREHSLSARARVGVFIGYDKYSKGYRVHFPDTGALAISRNVDFHED 442          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig58117.13411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A151T355_CAJCA7.640e-2248.78Retrovirus-related Pol polyprotein from transposon... [more]
A0A7S1T3E5_9CHLO6.000e-2051.32Hypothetical protein (Fragment) n=1 Tax=Tetraselmi... [more]
A0A068B703_GOSBA2.080e-1944.83Polyprotein n=5 Tax=Gossypium TaxID=3633 RepID=A0A... [more]
A0A6H5FV69_9HEMI3.860e-1948.81Uncharacterized protein n=2 Tax=Nesidiocoris tenui... [more]
G4TYM6_SERID2.460e-1845.78Integrase catalytic domain-containing protein n=3 ... [more]
A0A699Q9B6_TANCI2.580e-1850.67Retrovirus-related Pol polyprotein from transposon... [more]
G4TZX2_SERID3.120e-1845.78Integrase catalytic domain-containing protein (Fra... [more]
A0A4Y2LAF7_ARAVE4.630e-1850.00Retrovirus-related Pol polyprotein from transposon... [more]
A0A2U1QJ52_ARTAN4.640e-1848.84Uncharacterized protein n=1 Tax=Artemisia annua Ta... [more]
A0A177U095_9BASI1.180e-1746.43Integrase catalytic domain-containing protein n=2 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig58117contigH-paniculata_contig58117:492..752 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score90.5
Seed ortholog evalue4.2e-16
Seed eggNOG ortholog65672.G4TWW2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs227R3@155619,38DPC@33154,3H58M@355688,3NUZ7@4751,3UY7N@5204,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAgaricomycetes incertae sedis
Best eggNOG OGNA|NA|NA
Exons1
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.9949386-CDS-H-paniculata_contig58117:491..7521622930631.9949386-CDS-H-paniculata_contig58117:491..752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58117 492..752 -
1691481381.269923-CDS-H-paniculata_contig58117:491..7521691481381.269923-CDS-H-paniculata_contig58117:491..752Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig58117 492..752 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig58117.13411.1prot_H-paniculata_contig58117.13411.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig58117 492..752 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig58117.13411.1

>prot_H-paniculata_contig58117.13411.1 ID=prot_H-paniculata_contig58117.13411.1|Name=mRNA_H-paniculata_contig58117.13411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=87bp
RAPTRPHNGGTPCEKWHGETPKLDHLRVFGCTAYVMFQSQQRRKLDDKAW
AGVFLGYDKDSPSYCVYNPENKSVQLSRNLRFDEEDF
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mRNA from alignment at H-paniculata_contig58117:492..752-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig58117.13411.1 ID=mRNA_H-paniculata_contig58117.13411.1|Name=mRNA_H-paniculata_contig58117.13411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=261bp|location=Sequence derived from alignment at H-paniculata_contig58117:492..752- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGCCCCGACGCGACCGCACAACGGAGGAACGCCGTGCGAAAAATGGCA CGGCGAGACACCAAAATTGGACCACCTTCGCGTCTTCGGCTGCACGGCGT ATGTTATGTTCCAGTCACAACAGAGACGTAAGCTCGACGACAAAGCATGG GCGGGGGTGTTTCTGGGGTACGACAAGGACAGCCCGAGTTATTGCGTATA TAACCCGGAGAACAAGAGCGTCCAGTTGAGCAGGAACCTGAGATTTGACG AAGAAGACTTC
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Coding sequence (CDS) from alignment at H-paniculata_contig58117:492..752-

>mRNA_H-paniculata_contig58117.13411.1 ID=mRNA_H-paniculata_contig58117.13411.1|Name=mRNA_H-paniculata_contig58117.13411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at H-paniculata_contig58117:492..752- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCGCCCCGACGCGACCGCACAACGGAGGAACGCCGTGCGAAAAATGGCA
CGGCGAGACACCAAAATTGGACCACCTTCGCGTCTTCGGCTGCACGGCGT
ATGTTATGTTCCAGTCACAACAGAGACGTAAGCTCGACGACAAAGCATGG
GCGGGGGTGTTTCTGGGGTACGACAAGGACAGCCCGAGTTATTGCGTATA
TAACCCGGAGAACAAGAGCGTCCAGTTGAGCAGGAACCTGAGATTTGACG
AAGAAGACTTCCGCGCCCCGACGCGACCGCACAACGGAGGAACGCCGTGC
GAAAAATGGCACGGCGAGACACCAAAATTGGACCACCTTCGCGTCTTCGG
CTGCACGGCGTATGTTATGTTCCAGTCACAACAGAGACGTAAGCTCGACG
ACAAAGCATGGGCGGGGGTGTTTCTGGGGTACGACAAGGACAGCCCGAGT
TATTGCGTATATAACCCGGAGAACAAGAGCGTCCAGTTGAGCAGGAACCT
GAGATTTGACGAAGAAGACTTC
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