mRNA_H-paniculata_contig5810.13410.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig5810.13410.1
Unique NamemRNA_H-paniculata_contig5810.13410.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5810.13410.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5810contigH-paniculata_contig5810:2854..3482 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size205
Cds size162
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5810.13410.1prot_H-paniculata_contig5810.13410.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig5810 2897..3482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.9032602-UTR-H-paniculata_contig5810:2853..28961622930631.9032602-UTR-H-paniculata_contig5810:2853..2896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5810 2854..2896 -
1691481381.234861-UTR-H-paniculata_contig5810:2853..28961691481381.234861-UTR-H-paniculata_contig5810:2853..2896Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig5810 2854..2896 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930631.9204552-CDS-H-paniculata_contig5810:2896..30281622930631.9204552-CDS-H-paniculata_contig5810:2896..3028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5810 2897..3028 -
1691481381.2443438-CDS-H-paniculata_contig5810:2896..30281691481381.2443438-CDS-H-paniculata_contig5810:2896..3028Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5810 2897..3028 -
1622930631.9430604-CDS-H-paniculata_contig5810:3452..34821622930631.9430604-CDS-H-paniculata_contig5810:3452..3482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5810 3453..3482 -
1691481381.253354-CDS-H-paniculata_contig5810:3452..34821691481381.253354-CDS-H-paniculata_contig5810:3452..3482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig5810 3453..3482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig5810.13410.1

>prot_H-paniculata_contig5810.13410.1 ID=prot_H-paniculata_contig5810.13410.1|Name=mRNA_H-paniculata_contig5810.13410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=54bp
QGWRLEKVQTASQDHRRGSTDSFHEVLSTPFVSVAKSRCAVSLPNMLPSV
DPA*
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mRNA from alignment at H-paniculata_contig5810:2854..3482-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig5810.13410.1 ID=mRNA_H-paniculata_contig5810.13410.1|Name=mRNA_H-paniculata_contig5810.13410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=629bp|location=Sequence derived from alignment at H-paniculata_contig5810:2854..3482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGCTGGAGGCTTGAAAAAGTTCAGACCGTAAGATTTTGTTTGGATAG
ACAATATTATGTTGGGTTGTAGGACTCTAGGAATATGGGAAAGGAGAAAT
GAGAGTGTTGGAATGTCTGCAGTTCTCTTCTTGATGACTGTTCATTCTCC
GTACATGGTACGGTAGCAGGTTCTGGAACACAACATAGCTCCACCTCTCT
CTATATGTGTGTGTGTGTGTGTATGTATGTGTGTGTGTTGTTTGTTGATG
CAGGAAAAAAGAAGACGACGTCGCATTACCAGCATCTATGCTAGATGGAC
TGAAGGTAGTCTGTGTCGGCGGTGGACTTGACGAGATGGAGACAAAATCA
CATCGCCATGGCACAGCACAAACACATGAGGGGGGTCATGTTATCTCACT
CAGTGAATATCTTGCTCCTCTCTCGCTTGCTCGCTCGCTGTTTAAAATCC
TCAGGCTTCCCAAGACCACAGGCGCGGAAGCACGGATAGCTTTCATGAGG
TTCTGAGCACACCATTTGTTTCCGTGGCAAAGTCACGATGTGCAGTTTCT
CTTCCGAACATGTTGCCCTCTGTTGACCCTGCTTGACCGCTCATGAACAA
GGTCATGTACACAGTCAGTCCTATGTGCC
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Coding sequence (CDS) from alignment at H-paniculata_contig5810:2854..3482-

>mRNA_H-paniculata_contig5810.13410.1 ID=mRNA_H-paniculata_contig5810.13410.1|Name=mRNA_H-paniculata_contig5810.13410.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at H-paniculata_contig5810:2854..3482- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAAGGCTGGAGGCTTGAAAAAGTTCAGACCCAAGGCTGGAGGCTTGAAAA
AGTTCAGACCGCTTCCCAAGACCACAGGCGCGGAAGCACGGATAGCTTTC
ATGAGGTTCTGAGCACACCATTTGTTTCCGTGGCAAAGTCACGATGTGCA
GTTTCTCTTCCGAACATGTTGCCCTCTGTTGACCCTGCTTGAGCTTCCCA
AGACCACAGGCGCGGAAGCACGGATAGCTTTCATGAGGTTCTGAGCACAC
CATTTGTTTCCGTGGCAAAGTCACGATGTGCAGTTTCTCTTCCGAACATG
TTGCCCTCTGTTGACCCTGCTTGA
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